tigger: Infers Novel Immunoglobulin Alleles from Sequencing Data

Infers the V genotype of an individual from immunoglobulin (Ig) repertoire sequencing data (AIRR-Seq, Rep-Seq). Includes detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences. Citations: Gadala-Maria, et al (2015) <doi:10.1073/pnas.1417683112>, Gadala-Maria, et al (2019) <doi:10.3389/fimmu.2019.00129>.

Version: 1.1.0
Depends: R (≥ 4.0), ggplot2 (≥ 3.4.0)
Imports: alakazam (≥ 1.3.0), dplyr (≥ 1.0.0), doParallel, foreach, graphics, gridExtra, gtools, iterators, lazyeval, parallel, rlang, stats, stringi, tidyr (≥ 1.1.0), utils
Suggests: knitr, rmarkdown, testthat
Published: 2023-10-10
DOI: NA
Author: Daniel Gadala-Maria [aut], Susanna Marquez [aut, cre], Moriah Cohen [aut], Jason Vander Heiden [aut], Gur Yaari [aut], Steven Kleinstein [aut, cph]
Maintainer: Susanna Marquez <susanna.marquez at yale.edu>
BugReports: https://bitbucket.org/kleinstein/tigger/issues
License: AGPL-3
URL: http://tigger.readthedocs.io
NeedsCompilation: no
Citation: tigger citation info
Materials: README NEWS
CRAN checks: tigger results

Documentation:

Reference manual: tigger.pdf
Vignettes: Polymorphism detection and genotyping

Downloads:

Package source: tigger_1.1.0.tar.gz
Windows binaries: r-devel: tigger_1.1.0.zip, r-release: tigger_1.1.0.zip, r-oldrel: tigger_1.1.0.zip
macOS binaries: r-release (arm64): tigger_1.1.0.tgz, r-oldrel (arm64): tigger_1.1.0.tgz, r-release (x86_64): tigger_1.1.0.tgz, r-oldrel (x86_64): tigger_1.1.0.tgz
Old sources: tigger archive

Reverse dependencies:

Reverse imports: ogrdbstats

Linking:

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