IncidencePrevalence: Estimate Incidence and Prevalence using the OMOP Common Data Model

Calculate incidence and prevalence using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Incidence and prevalence can be estimated for the total population in a database or for a stratification cohort.

Version: 0.7.3
Depends: R (≥ 4.0)
Imports: CDMConnector (≥ 1.3.0), checkmate (≥ 2.0.0), cli (≥ 3.0.0), clock, DBI (≥ 1.0.0), dbplyr (≥ 2.5.0), dplyr (≥ 1.1.0), glue (≥ 1.5.0), ggplot2 (≥ 3.4.0), omopgenerics (≥ 0.1.2), scales (≥ 1.1.0), lifecycle, lubridate (≥ 1.0.0), magrittr (≥ 2.0.0), PatientProfiles (≥ 1.1.0), purrr (≥ 0.3.5), rlang (≥ 1.0.0), stringr (≥ 1.5.0), tibble, tidyr (≥ 1.2.0), tidyselect (≥ 1.2.0), zip (≥ 2.2.0)
Suggests: knitr, rmarkdown, RPostgres, duckdb (≥ 1.0.0), odbc, here, Hmisc, epitools, tictoc, testthat (≥ 0.3.1), spelling, PaRe
Published: 2024-06-15
DOI: 10.32614/CRAN.package.IncidencePrevalence
Author: Edward Burn ORCID iD [aut, cre], Berta Raventos ORCID iD [aut], Marti Catala ORCID iD [aut], Mike Du ORCID iD [ctb], Yuchen Guo ORCID iD [ctb], Adam Black ORCID iD [ctb], Ger Inberg ORCID iD [ctb], Kim Lopez ORCID iD [ctb]
Maintainer: Edward Burn <edward.burn at ndorms.ox.ac.uk>
License: Apache License (≥ 2)
URL: https://darwin-eu.github.io/IncidencePrevalence/
NeedsCompilation: no
Language: en-US
Materials: README
CRAN checks: IncidencePrevalence results

Documentation:

Reference manual: IncidencePrevalence.pdf
Vignettes: a01_Introduction_to_IncidencePrevalence
a02_Creating_denominator_cohorts
a03_Creating_target_denominator_populations
a04_Calculating_prevalence
a05_Calculating_incidence
a06_Plotting_options

Downloads:

Package source: IncidencePrevalence_0.7.3.tar.gz
Windows binaries: r-devel: IncidencePrevalence_0.7.2.zip, r-release: IncidencePrevalence_0.7.2.zip, r-oldrel: IncidencePrevalence_0.7.3.zip
macOS binaries: r-release (arm64): IncidencePrevalence_0.7.3.tgz, r-oldrel (arm64): IncidencePrevalence_0.7.2.tgz, r-release (x86_64): IncidencePrevalence_0.7.3.tgz, r-oldrel (x86_64): IncidencePrevalence_0.7.2.tgz
Old sources: IncidencePrevalence archive

Reverse dependencies:

Reverse suggests: CohortConstructor

Linking:

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