CRAN Package Check Results for Package polysat

Last updated on 2021-12-06 15:52:16 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7-5 26.64 111.00 137.64 ERROR
r-devel-linux-x86_64-debian-gcc 1.7-5 19.33 84.15 103.48 ERROR
r-devel-linux-x86_64-fedora-clang 1.7-5 183.86 ERROR
r-devel-linux-x86_64-fedora-gcc 1.7-5 165.42 ERROR
r-devel-windows-x86_64-new-UL 1.7-5 54.00 217.00 271.00 ERROR
r-devel-windows-x86_64-new-TK 1.7-5 ERROR
r-devel-windows-x86_64-old 1.7-5 40.00 116.00 156.00 ERROR
r-patched-linux-x86_64 1.7-5 26.75 109.93 136.68 OK
r-release-linux-x86_64 1.7-5 23.68 116.98 140.66 OK
r-release-macos-arm64 1.7-5 OK
r-release-macos-x86_64 1.7-5 OK
r-release-windows-ix86+x86_64 1.7-5 62.00 192.00 254.00 OK
r-oldrel-macos-x86_64 1.7-5 OK
r-oldrel-windows-ix86+x86_64 1.7-5 62.00 191.00 253.00 OK

Check Details

Version: 1.7-5
Check: examples
Result: ERROR
    Running examples in 'polysat-Ex.R' failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: genotypeProbs
    > ### Title: Calculate Probabilities of Unambiguous Genotypes
    > ### Aliases: genotypeProbs
    > ### Keywords: symbolmath distribution
    >
    > ### ** Examples
    >
    > # get a data set and define ploidies
    > data(testgenotypes)
    > Ploidies(testgenotypes) <- c(8,8,8,4,8,8,rep(4,14))
    > # get allele frequencies
    > tfreq <- simpleFreq(testgenotypes)
    >
    > # see results of genotypeProbs under different circumstances
    > Genotype(testgenotypes, "FCR7", "RhCBA15")
    [1] 197 208 212 218
    > genotypeProbs(testgenotypes, "FCR7", "RhCBA15", tfreq)
    $probs
    [1] 1
    
    $genotypes
     [,1] [,2] [,3] [,4]
    [1,] 197 208 212 218
    
    > Genotype(testgenotypes, "FCR10", "RhCBA15")
    [1] 199 209 218
    > genotypeProbs(testgenotypes, "FCR10", "RhCBA15", tfreq)
    Error in prod(f[as.character(allelefill[i, ])]) :
     invalid 'type' (list) of argument
    Calls: genotypeProbs
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.7-5
Check: examples
Result: ERROR
    Running examples in ‘polysat-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: genotypeProbs
    > ### Title: Calculate Probabilities of Unambiguous Genotypes
    > ### Aliases: genotypeProbs
    > ### Keywords: symbolmath distribution
    >
    > ### ** Examples
    >
    > # get a data set and define ploidies
    > data(testgenotypes)
    > Ploidies(testgenotypes) <- c(8,8,8,4,8,8,rep(4,14))
    > # get allele frequencies
    > tfreq <- simpleFreq(testgenotypes)
    >
    > # see results of genotypeProbs under different circumstances
    > Genotype(testgenotypes, "FCR7", "RhCBA15")
    [1] 197 208 212 218
    > genotypeProbs(testgenotypes, "FCR7", "RhCBA15", tfreq)
    $probs
    [1] 1
    
    $genotypes
     [,1] [,2] [,3] [,4]
    [1,] 197 208 212 218
    
    > Genotype(testgenotypes, "FCR10", "RhCBA15")
    [1] 199 209 218
    > genotypeProbs(testgenotypes, "FCR10", "RhCBA15", tfreq)
    Error in prod(f[as.character(allelefill[i, ])]) :
     invalid 'type' (list) of argument
    Calls: genotypeProbs
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-devel-windows-x86_64-old