CRAN Package Check Results for Package lcmm

Last updated on 2021-11-28 15:48:45 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.9.3 OK
r-devel-linux-x86_64-debian-gcc 1.9.3 99.63 285.26 384.89 ERROR
r-devel-linux-x86_64-fedora-clang 1.9.3 677.39 ERROR
r-devel-linux-x86_64-fedora-gcc 1.9.3 683.44 ERROR
r-devel-windows-x86_64-new-UL 1.9.3 177.00 499.00 676.00 OK
r-devel-windows-x86_64-new-TK 1.9.3 OK
r-devel-windows-x86_64-old 1.9.3 113.00 513.00 626.00 OK
r-patched-linux-x86_64 1.9.3 111.46 420.41 531.87 OK
r-patched-solaris-x86 1.9.3 709.20 NOTE
r-release-linux-x86_64 1.9.3 104.43 419.37 523.80 OK
r-release-macos-arm64 1.9.3 NOTE
r-release-macos-x86_64 1.9.3 OK
r-release-windows-ix86+x86_64 1.9.3 248.00 444.00 692.00 NOTE
r-oldrel-macos-x86_64 1.9.3 OK
r-oldrel-windows-ix86+x86_64 1.9.3 170.00 550.00 720.00 NOTE

Check Details

Version: 1.9.3
Check: examples
Result: ERROR
    Running examples in ‘lcmm-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: cuminc
    > ### Title: Predicted cumulative incidence of event according to a profile
    > ### of covariates
    > ### Aliases: cuminc
    >
    > ### ** Examples
    >
    > m2 <- Jointlcmm(fixed= Ydep1~Time*X1,mixture=~Time,random=~Time,
    + classmb=~X3,subject='ID',survival = Surv(Tevent,Event)~X1+mixture(X2),
    + hazard="3-quant-splines",hazardtype="PH",ng=2,data=data_lcmm,
    + B=c(0.64,-0.62,0,0,0.52,0.81,0.41,0.78,0.1,0.77,-0.05,10.43,11.3,-2.6,
    + -0.52,1.41,-0.05,0.91,0.05,0.21,1.5))
    Be patient, Jointlcmm is running ...
    The program took 2.23 seconds
    >
    > par(mfrow=c(1,2))
    > plot(cuminc(m2,time=seq(0,20),X1=0,X2=0), ylim=c(0,1))
    Error in Xevt * bevt[, evt] : non-numeric argument to binary operator
    Calls: plot ... sapply -> lapply -> FUN -> integrate -> <Anonymous> -> f
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.9.3
Check: examples
Result: ERROR
    Running examples in ‘lcmm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: cuminc
    > ### Title: Predicted cumulative incidence of event according to a profile
    > ### of covariates
    > ### Aliases: cuminc
    >
    > ### ** Examples
    >
    > m2 <- Jointlcmm(fixed= Ydep1~Time*X1,mixture=~Time,random=~Time,
    + classmb=~X3,subject='ID',survival = Surv(Tevent,Event)~X1+mixture(X2),
    + hazard="3-quant-splines",hazardtype="PH",ng=2,data=data_lcmm,
    + B=c(0.64,-0.62,0,0,0.52,0.81,0.41,0.78,0.1,0.77,-0.05,10.43,11.3,-2.6,
    + -0.52,1.41,-0.05,0.91,0.05,0.21,1.5))
    Be patient, Jointlcmm is running ...
    The program took 2.83 seconds
    >
    > par(mfrow=c(1,2))
    > plot(cuminc(m2,time=seq(0,20),X1=0,X2=0), ylim=c(0,1))
    Error in Xevt * bevt[, evt] : non-numeric argument to binary operator
    Calls: plot ... sapply -> lapply -> FUN -> integrate -> <Anonymous> -> f
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.9.3
Check: examples
Result: ERROR
    Running examples in ‘lcmm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: cuminc
    > ### Title: Predicted cumulative incidence of event according to a profile
    > ### of covariates
    > ### Aliases: cuminc
    >
    > ### ** Examples
    >
    > m2 <- Jointlcmm(fixed= Ydep1~Time*X1,mixture=~Time,random=~Time,
    + classmb=~X3,subject='ID',survival = Surv(Tevent,Event)~X1+mixture(X2),
    + hazard="3-quant-splines",hazardtype="PH",ng=2,data=data_lcmm,
    + B=c(0.64,-0.62,0,0,0.52,0.81,0.41,0.78,0.1,0.77,-0.05,10.43,11.3,-2.6,
    + -0.52,1.41,-0.05,0.91,0.05,0.21,1.5))
    Be patient, Jointlcmm is running ...
    The program took 2.34 seconds
    >
    > par(mfrow=c(1,2))
    > plot(cuminc(m2,time=seq(0,20),X1=0,X2=0), ylim=c(0,1))
    Error in Xevt * bevt[, evt] : non-numeric argument to binary operator
    Calls: plot ... sapply -> lapply -> FUN -> integrate -> <Anonymous> -> f
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.9.3
Check: installed package size
Result: NOTE
     installed size is 5.2Mb
     sub-directories of 1Mb or more:
     R 1.4Mb
     doc 1.2Mb
     libs 2.3Mb
Flavors: r-patched-solaris-x86, r-release-macos-arm64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64