CRAN Package Check Results for Package DeLorean

Last updated on 2021-12-03 15:52:15 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.5.0 484.98 346.70 831.68 NOTE
r-devel-linux-x86_64-debian-gcc 1.5.0 411.22 119.18 530.40 WARN
r-devel-linux-x86_64-fedora-clang 1.5.0 502.55 WARN
r-devel-linux-x86_64-fedora-gcc 1.5.0 962.98 WARN
r-devel-windows-x86_64-new-UL 1.5.0 545.00 459.00 1004.00 NOTE
r-devel-windows-x86_64-new-TK 1.5.0 NOTE
r-devel-windows-x86_64-old 1.5.0 550.00 382.00 932.00 NOTE
r-patched-linux-x86_64 1.5.0 383.71 359.07 742.78 NOTE
r-release-linux-x86_64 1.5.0 455.52 361.22 816.74 NOTE
r-release-macos-arm64 1.5.0 NOTE
r-release-macos-x86_64 1.5.0 NOTE
r-release-windows-ix86+x86_64 1.5.0 1085.00 523.00 1608.00 NOTE
r-oldrel-macos-x86_64 1.5.0 NOTE
r-oldrel-windows-ix86+x86_64 1.5.0 1077.00 451.00 1528.00 NOTE

Check Details

Version: 1.5.0
Check: for GNU extensions in Makefiles
Result: NOTE
    GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-devel-windows-x86_64-old, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘DeLorean.Rmd’ using rmarkdown
    Loading required package: Rcpp
    - For execution on a local, multicore CPU with excess RAM we recommend calling
    options(mc.cores = parallel::detectCores())
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Have 35 cells after filtering
    Joining, by = "cell"
    Have 20 genes after filtering
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    TSP:scaled:none:1; time=0.0529999999999999s; LL=-3373.49496112819
    Timing stopped at: 0.003 0 0.003
    R2E:scaled:none:1; time=0.048s; LL=-3525.36243262827
    Timing stopped at: 0.02 0 0.036
    Quitting from lines 147-148 (DeLorean.Rmd)
    Error: processing vignette ‘DeLorean.Rmd’ failed with diagnostics:
    $ operator is invalid for atomic vectors
    --- failed re-building ‘DeLorean.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘DeLorean.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.5.0
Check: installed package size
Result: NOTE
     installed size is 77.3Mb
     sub-directories of 1Mb or more:
     libs 74.5Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-old, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.5.0
Check: top-level files
Result: NOTE
    ‘configure’: /bin/bash is not portable
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.5.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘lattice’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-TK, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 1.5.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘DeLorean.Rmd’ using rmarkdown
    Loading required package: Rcpp
    - For execution on a local, multicore CPU with excess RAM we recommend calling
    options(mc.cores = parallel::detectCores())
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Have 35 cells after filtering
    Joining, by = "cell"
    Have 20 genes after filtering
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    R2E:scaled:none:1; time=0.0439999999999996s; LL=-3359.82495546144
    TSP:scaled:none:1; time=0.0619999999999994s; LL=-3329.56800228481
    Timing stopped at: 0.016 0.003 0.019
    Timing stopped at: 0.002 0 0.003
    Quitting from lines 147-148 (DeLorean.Rmd)
    Error: processing vignette 'DeLorean.Rmd' failed with diagnostics:
    $ operator is invalid for atomic vectors
    --- failed re-building ‘DeLorean.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘DeLorean.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.5.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘DeLorean.Rmd’ using rmarkdown
    Loading required package: Rcpp
    - For execution on a local, multicore CPU with excess RAM we recommend calling
    options(mc.cores = parallel::detectCores())
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    Have 35 cells after filtering
    Joining, by = "cell"
    Have 20 genes after filtering
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "gene"
    Joining, by = "cell"
    Joining, by = c("cell", "capture")
    R2E:scaled:none:1; time=0.0709999999999997s; LL=-3414.3278935477
    TSP:scaled:none:1; time=0.0990000000000002s; LL=-3301.01142329206
    Timing stopped at: 0.03 0.001 0.03
    Timing stopped at: 0.005 0 0.005
    Quitting from lines 147-148 (DeLorean.Rmd)
    Error: processing vignette 'DeLorean.Rmd' failed with diagnostics:
    $ operator is invalid for atomic vectors
    --- failed re-building ‘DeLorean.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘DeLorean.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.5.0
Check: line endings in C/C++/Fortran sources/headers
Result: NOTE
    Found the following sources/headers with CR or CRLF line endings:
     src/stan_files/exact.hpp
     src/stan_files/exactsizes.hpp
     src/stan_files/lowrank.hpp
     src/stan_files/lowranksizes.hpp
    Some Unix compilers require LF line endings.
Flavor: r-devel-windows-x86_64-new-TK