Generates interactive plots for analysing and visualising three-class high dimensional data. It is particularly suited to visualising differences in continuous attributes such as gene/protein/biomarker expression levels between three groups. Differential gene/biomarker expression analysis between two classes is typically shown as a volcano plot. However, with three groups this type of visualisation is particularly difficult to interpret. This package generates 3D volcano plots and 3-way polar plots for easier interpretation of three-class data.
|Depends:||R (≥ 3.5)|
|Imports:||plotly, ggplot2, ggpubr, htmlwidgets, magrittr, methods, Rfast, rlang, matrixTests|
|Suggests:||DESeq2, edgeR, limma, qvalue, SummarizedExperiment, knitr, rmarkdown, kableExtra, usethis, easylabel|
|Author:||Katriona Goldmann [aut, cre], Myles Lewis [aut]|
|Maintainer:||Katriona Goldmann <k.goldmann at qmul.ac.uk>|
|CRAN checks:||volcano3D results|
|Windows binaries:||r-devel: volcano3D_2.0.8.zip, r-release: volcano3D_2.0.8.zip, r-oldrel: volcano3D_2.0.8.zip|
|macOS binaries:||r-release (arm64): volcano3D_2.0.8.tgz, r-oldrel (arm64): volcano3D_2.0.8.tgz, r-release (x86_64): volcano3D_2.0.8.tgz, r-oldrel (x86_64): volcano3D_2.0.8.tgz|
|Old sources:||volcano3D archive|
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