seqmagick: Sequence Manipulation Utilities

Supports reading and writing sequences for different formats (currently interleaved and sequential formats for 'FASTA' and 'PHYLIP'), file conversion, and manipulation (e.g. filter sequences that contain specify pattern, export consensus sequence from an alignment).

Version: 0.1.4
Depends: R (≥ 3.6.0)
Imports: Biostrings, magrittr, utils
Suggests: downloader, knitr, GenomicAlignments, GenomicRanges, IRanges, muscle, Rsamtools, prettydoc
Published: 2020-09-22
Author: Guangchuang Yu ORCID iD [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
BugReports: https://github.com/YuLab-SMU/seqmagick/issues
License: Artistic-2.0
URL: https://github.com/YuLab-SMU/seqmagick
NeedsCompilation: no
Materials: NEWS
CRAN checks: seqmagick results

Downloads:

Reference manual: seqmagick.pdf
Vignettes: seqmagick introduction
Package source: seqmagick_0.1.4.tar.gz
Windows binaries: r-devel: seqmagick_0.1.4.zip, r-release: seqmagick_0.1.4.zip, r-oldrel: seqmagick_0.1.4.zip
macOS binaries: r-release: seqmagick_0.1.4.tgz, r-oldrel: seqmagick_0.1.4.tgz
Old sources: seqmagick archive

Reverse dependencies:

Reverse suggests: ggmsa

Linking:

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