ioncopy: Calling Copy Number Alterations in Amplicon Sequencing Data

Method for the calculation of copy numbers and calling of copy number alterations. The algorithm uses coverage data from amplicon sequencing of a sample cohort as input. The method includes significance assessment, correction for multiple testing and does not depend on normal DNA controls. Budczies (2016 Mar 15) <doi:10.18632/oncotarget.7451>.

Version: 2.2.2
Imports: shiny, zip
Published: 2020-08-11
Author: Jan Budczies, Eva Romanovsky
Maintainer: Jan Budczies <jan.budczies at med.uni-heidelberg.de>
License: GPL-3
NeedsCompilation: no
CRAN checks: ioncopy results

Downloads:

Reference manual: ioncopy.pdf
Package source: ioncopy_2.2.2.tar.gz
Windows binaries: r-devel: ioncopy_2.2.2.zip, r-release: ioncopy_2.2.2.zip, r-oldrel: ioncopy_2.2.2.zip
macOS binaries: r-release: ioncopy_2.2.2.tgz, r-oldrel: ioncopy_2.2.2.tgz
Old sources: ioncopy archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=ioncopy to link to this page.