Rtapas: Random Tanglegram Partitions

Applies a given global-fit method to random partial tanglegrams of a fixed size to identify the associations, terminals, and nodes that maximize phylogenetic (in)congruence. It also includes functions to compute more easily the confidence intervals of classification metrics and plot results, reducing computational time. See Llaberia-Robledillo et al., (2023) <doi:10.1093/sysbio/syad016>.

Version: 1.2
Depends: phytools, parallel, R (≥ 3.5.0)
Imports: ape, distory, paco, parallelly, stats, stringr, vegan
Suggests: testthat (≥
Published: 2024-06-13
DOI: 10.32614/CRAN.package.Rtapas
Author: Mar Llaberia-Robledillo ORCID iD [aut, cre, cph], Juan A. Balbuena ORCID iD [aut, cph], José Ignacio Lucas-Lledó ORCID iD [aut, cph], Oscar Alejandro Pérez-Escobar ORCID iD [aut, cph]
Maintainer: Mar Llaberia-Robledillo <mar.llaberia at uv.es>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README
CRAN checks: Rtapas results


Reference manual: Rtapas.pdf


Package source: Rtapas_1.2.tar.gz
Windows binaries: r-devel: Rtapas_1.2.zip, r-release: Rtapas_1.2.zip, r-oldrel: Rtapas_1.2.zip
macOS binaries: r-release (arm64): Rtapas_1.2.tgz, r-oldrel (arm64): Rtapas_1.2.tgz, r-release (x86_64): Rtapas_1.2.tgz, r-oldrel (x86_64): Rtapas_1.2.tgz
Old sources: Rtapas archive


Please use the canonical form https://CRAN.R-project.org/package=Rtapas to link to this page.