CRAN Package Check Results for Package subtype

Last updated on 2020-10-26 03:48:36 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 8.16 67.48 75.64 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 7.49 51.08 58.57 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 96.20 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 90.22 NOTE
r-devel-windows-ix86+x86_64 1.0 17.00 83.00 100.00 NOTE
r-patched-linux-x86_64 1.0 7.83 61.33 69.16 NOTE
r-patched-solaris-x86 1.0 140.80 NOTE
r-release-linux-x86_64 1.0 7.04 61.56 68.60 NOTE
r-release-macos-x86_64 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 13.00 63.00 76.00 NOTE
r-oldrel-macos-x86_64 1.0 NOTE
r-oldrel-windows-ix86+x86_64 1.0 16.00 58.00 74.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     'ROCR' 'penalized'
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    ELF: no visible global function definition for 'pt'
    ELF: no visible global function definition for 'qnorm'
    ELF: no visible global function definition for 'lm'
    ELF: no visible global function definition for 'lowess'
    ELF: no visible global function definition for 'dnorm'
    ELF: no visible global function definition for 'approx'
    subtype: no visible global function definition for 'runif'
    subtype: no visible global function definition for 'hclust'
    subtype: no visible global function definition for 'dist'
    subtype: no visible global function definition for 'cutree'
    subtype: no visible global function definition for 'pt'
    subtype: no visible global function definition for 'heatmap'
    test_subtype_only: no visible global function definition for 'pt'
    test_subtype_only: no visible global function definition for 'survdiff'
    test_subtype_only: no visible global function definition for 'survfit'
    test_subtype_only: no visible global function definition for 'title'
    ufun: no visible global function definition for 'dnorm'
    ufun: no visible global function definition for 'lowess'
    Undefined global functions or variables:
     approx cutree dist dnorm hclust heatmap lm lowess pt qnorm runif
     survdiff survfit title
    Consider adding
     importFrom("graphics", "title")
     importFrom("stats", "approx", "cutree", "dist", "dnorm", "hclust",
     "heatmap", "lm", "lowess", "pt", "qnorm", "runif")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'subtype.Rd':
     \usage lines wider than 90 characters:
     subtype(GEset, outcomeLabels, treatment=NULL, Npermutes=10, Nchunks = 25, minClusterSizeB = 20, NclustersASet = 100, FDRpermutation = T ... [TRUNCATED]
     \examples lines wider than 100 characters:
     summary(A,f.out=0) ### f.out can be used for filtering out uninteresting subtypes. e.g. if f.out=2, we ignore subtypes having N01_0<=2 ... [TRUNCATED]
    
    Rd file 'summary.Rd':
     \examples lines wider than 100 characters:
     summary(A,f.out=0) ### f.out can be used for filtering out uninteresting subtypes. e.g. if f.out=2, we ignore subtypes having N01_0<=2 ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64