Last updated on 2023-01-29 16:55:10 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.0 | 17.75 | 304.11 | 321.86 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.4.0 | 12.99 | 223.82 | 236.81 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.4.0 | 387.36 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.0 | 395.25 | OK | |||
| r-devel-windows-x86_64 | 0.4.0 | 422.00 | 573.00 | 995.00 | ERROR | |
| r-patched-linux-x86_64 | 0.4.0 | 15.98 | 290.07 | 306.05 | OK | |
| r-release-linux-x86_64 | 0.4.0 | 10.93 | 256.77 | 267.70 | OK | |
| r-release-macos-arm64 | 0.4.0 | 116.00 | OK | |||
| r-release-macos-x86_64 | 0.4.0 | 155.00 | OK | |||
| r-release-windows-x86_64 | 0.4.0 | 337.00 | 520.00 | 857.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.4.0 | 128.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.4.0 | 178.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 0.4.0 | 45.00 | 447.00 | 492.00 | OK |
Version: 0.4.0
Check: tests
Result: ERROR
Running 'testthat.R' [240s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(slendr)
The slim binary was not found in your $PATH variable. Most of
the functionality in this package will work without any issues
but you will not be able to simulate data with the `slim()` function.
If you want to run SLiM simulations, make sure to modify the $PATH
variable so that it points to the directory containing the slim
command-line program. One easy way to do this is to add this:
PATH="path/to/the/directory/with/slim/program"
to your ~/.Renviron file.
--------------------
A slendr Python environment with the necessary versions of msprime (1.2.0),
tskit (0.5.2), and pyslim (1.0) has not been found. If this is not the
first time you're running slendr, the most likely explanation for this
message is that some of slendr's Python dependencies need an update.
You can setup a pre-configured environment with all of slendr's Python
dependencies by running the function setup_env().
>
> test_check("slendr")
[ FAIL 5 | WARN 150 | SKIP 22 | PASS 168 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• !check_env_present() is TRUE (1)
• !slendr:::check_env_present() is TRUE (19)
• Sys.which("slim") == "" is TRUE (2)
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compilation.R:6'): 'competition' must be specified in compile_model() if missing ──
`compile_model(...)` produced warnings.
── Failure ('test-compilation.R:14'): 'mating' must be specified in compile_model() if missing ──
`compile_model(...)` produced warnings.
── Failure ('test-compilation.R:22'): 'dispersal' must be specified in compile_model() if missing ──
`compile_model(...)` produced warnings.
── Failure ('test-compilation.R:28'): 'competition', 'mating', and 'dispersal' do not have to be specified in compile_model() if already present ──
`compile_model(...)` produced warnings.
── Failure ('test-serialization.R:72'): non-unique population names lead to error ──
`compile_model(...)` produced warnings.
[ FAIL 5 | WARN 150 | SKIP 22 | PASS 168 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.4.0
Check: tests
Result: ERROR
Running 'testthat.R' [228s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(slendr)
The slim binary was not found in your $PATH variable. Most of
the functionality in this package will work without any issues
but you will not be able to simulate data with the `slim()` function.
If you want to run SLiM simulations, make sure to modify the $PATH
variable so that it points to the directory containing the slim
command-line program. One easy way to do this is to add this:
PATH="path/to/the/directory/with/slim/program"
to your ~/.Renviron file.
--------------------
A slendr Python environment with the necessary versions of msprime (1.2.0),
tskit (0.5.2), and pyslim (1.0) has not been found. If this is not the
first time you're running slendr, the most likely explanation for this
message is that some of slendr's Python dependencies need an update.
You can setup a pre-configured environment with all of slendr's Python
dependencies by running the function setup_env().
>
> test_check("slendr")
proj_create_from_database: datum not found
proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
proj_create_from_database: datum not found
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proj_create_from_database: prime meridian not found
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proj_create_from_database: ellipsoid not found
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proj_create_from_database: datum not found
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proj_create_from_database: prime meridian not found
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proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
proj_create_from_database: datum not found
proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
proj_create_from_database: datum not found
proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
proj_create_from_database: datum not found
proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
proj_create_from_database: datum not found
proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
proj_create_from_database: datum not found
proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
proj_create_from_database: datum not found
proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
proj_create_from_database: datum not found
proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
proj_create_from_database: datum not found
proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
proj_create_from_database: datum not found
proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
proj_create_from_database: datum not found
proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
proj_create_from_database: datum not found
proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
proj_create_from_database: datum not found
proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
proj_create_from_database: datum not found
proj_create_from_database: ellipsoid not found
proj_create_from_database: prime meridian not found
[ FAIL 5 | WARN 150 | SKIP 22 | PASS 168 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• !check_env_present() is TRUE (1)
• !slendr:::check_env_present() is TRUE (19)
• Sys.which("slim") == "" is TRUE (2)
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compilation.R:6'): 'competition' must be specified in compile_model() if missing ──
`compile_model(...)` produced warnings.
── Failure ('test-compilation.R:14'): 'mating' must be specified in compile_model() if missing ──
`compile_model(...)` produced warnings.
── Failure ('test-compilation.R:22'): 'dispersal' must be specified in compile_model() if missing ──
`compile_model(...)` produced warnings.
── Failure ('test-compilation.R:28'): 'competition', 'mating', and 'dispersal' do not have to be specified in compile_model() if already present ──
`compile_model(...)` produced warnings.
── Failure ('test-serialization.R:72'): non-unique population names lead to error ──
`compile_model(...)` produced warnings.
[ FAIL 5 | WARN 150 | SKIP 22 | PASS 168 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64