CRAN Package Check Results for Package pmparser

Last updated on 2022-08-15 03:52:55 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.10 5.79 64.05 69.84 OK
r-devel-linux-x86_64-debian-gcc 1.0.10 4.09 45.76 49.85 OK
r-devel-linux-x86_64-fedora-clang 1.0.10 95.18 OK
r-devel-linux-x86_64-fedora-gcc 1.0.10 84.66 OK
r-devel-windows-x86_64 1.0.10 7.00 116.00 123.00 OK
r-patched-linux-x86_64 1.0.10 5.31 59.05 64.36 OK
r-release-linux-x86_64 1.0.10 4.20 57.70 61.90 OK
r-release-macos-arm64 1.0.10 62.00 OK
r-release-macos-x86_64 1.0.10 68.00 OK
r-release-windows-x86_64 1.0.10 30.00 109.00 139.00 OK
r-oldrel-macos-arm64 1.0.10 59.00 OK
r-oldrel-macos-x86_64 1.0.10 73.00 OK
r-oldrel-windows-ix86+x86_64 1.0.10 10.00 75.00 85.00 ERROR

Check Details

Version: 1.0.10
Check: tests
Result: ERROR
     Running 'testthat.R' [12s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(pmparser)
     >
     > test_check('pmparser')
     [ FAIL 4 | WARN 8 | SKIP 4 | PASS 64 ]
    
     == Skipped tests ===============================================================
     * On CRAN (4)
    
     == Failed tests ================================================================
     -- Error (test_modify_pubmed_db_dup.R:51:3): modifyPubmedDb create is unique ---
     Error in `gzfile(file, open = "rb")`: cannot open the connection
     Backtrace:
     x
     1. \-pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:51:2
     2. \-pmparser::getCitation(...)
     3. \-pmparser:::writeTableInChunks(...)
     4. +-R.utils::countLines(path)
     5. \-R.utils::countLines.default(path)
     6. \-base::gzfile(file, open = "rb")
     -- Error (test_modify_pubmed_db_dup.R:67:3): modifyPubmedDb update is unique ---
     Error in `gzfile(file, open = "rb")`: cannot open the connection
     Backtrace:
     x
     1. \-pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:67:2
     2. \-pmparser::getCitation(...)
     3. \-pmparser:::writeTableInChunks(...)
     4. +-R.utils::countLines(path)
     5. \-R.utils::countLines.default(path)
     6. \-base::gzfile(file, open = "rb")
     -- Error (test_modify_pubmed_db_std.R:22:3): modifyPubmedDb create matches standard --
     Error in `gzfile(file, open = "rb")`: cannot open the connection
     Backtrace:
     x
     1. \-pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:22:2
     2. \-pmparser::getCitation(...)
     3. \-pmparser:::writeTableInChunks(...)
     4. +-R.utils::countLines(path)
     5. \-R.utils::countLines.default(path)
     6. \-base::gzfile(file, open = "rb")
     -- Error (test_modify_pubmed_db_std.R:42:3): modifyPubmedDb update matches standard --
     Error in `gzfile(file, open = "rb")`: cannot open the connection
     Backtrace:
     x
     1. \-pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:42:2
     2. \-pmparser::getCitation(...)
     3. \-pmparser:::writeTableInChunks(...)
     4. +-R.utils::countLines(path)
     5. \-R.utils::countLines.default(path)
     6. \-base::gzfile(file, open = "rb")
    
     [ FAIL 4 | WARN 8 | SKIP 4 | PASS 64 ]
     Error: Test failures
     In addition: Warning message:
     call dbDisconnect() when finished working with a connection
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64