CRAN Package Check Results for Package mappoly

Last updated on 2022-06-28 03:51:36 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.0 136.51 378.09 514.60 OK
r-devel-linux-x86_64-debian-gcc 0.3.0 111.43 274.74 386.17 ERROR
r-devel-linux-x86_64-fedora-clang 0.3.0 756.29 ERROR
r-devel-linux-x86_64-fedora-gcc 0.3.0 746.96 ERROR
r-devel-windows-x86_64 0.3.0 158.00 440.00 598.00 NOTE
r-patched-linux-x86_64 0.3.0 151.40 356.08 507.48 ERROR
r-release-linux-x86_64 0.3.0 138.53 355.53 494.06 ERROR
r-release-macos-arm64 0.3.0 195.00 NOTE
r-release-macos-x86_64 0.3.0 312.00 NOTE
r-release-windows-x86_64 0.3.0 158.00 430.00 588.00 NOTE
r-oldrel-macos-arm64 0.3.0 137.00 NOTE
r-oldrel-macos-x86_64 0.3.0 240.00 NOTE
r-oldrel-windows-ix86+x86_64 0.3.0 416.00 774.00 1190.00 ERROR

Additional issues

M1mac

Check Details

Version: 0.3.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [61s/391s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > if(requireNamespace("testthat", quietly = TRUE)){
     + library(testthat)
     + library(mappoly)
     + test_check("mappoly")
     + }
     =====================================================
     MAPpoly Package [Version 0.3.02022-01-11 09:22:41 UTC]
     More information: https://github.com/mmollina/MAPpoly
     =====================================================
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     INFO: Going singlemode. Using one CPU.
     Stress: 0.30318
     Mean Nearest Neighbour Fit: 6.18154INFO: Using 2 CPUs for calculation.
     INFO: Done with 2701 pairs of markers
     INFO: Calculation took: 12.851 seconds
     INFO: Using 2 CPUs for calculation.
     INFO: Done with 2701 pairs of markers
     INFO: Calculation took: 13.119 seconds
     Going RcppParallel mode.
     ...
     Done with pairwise computation.
     ~~~~~~~
     Reorganizing results
     ...
     Caching the following dosage combination:
     P.k P.k+1 Q.k Q.k+1
     Conf.1 3 0 2 1
     Conf.2 3 3 2 2
     Conf.3 3 4 2 3
     Conf.4 4 0 3 1
     Conf.5 4 3 3 2
     Conf.6 4 4 3 3
     INFO: Going singlemode. Using one Core/CPU/PC for calculation.
     INFO: Done with 6 phase configurations
     INFO: Calculation took: 0.569 seconds
     This is an object of class 'cache.info'
     -----------------------------------------------------
     Ploidy level: 4
     No. marker combinations: 625
     -----------------------------------------------------
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
     Ploidy level:4
     Number of individuals:160
     ..................................................
     ..................................................
     ..................................................
     ..........
     Ploidy level:4
     Number of individuals:160
     ..................................................
     ..................................................
     ..................................................
     ..........
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     This is an object of class 'mappoly.map'
     Ploidy level: 4
     No. individuals: 160
     No. markers: 5
     No. linkage phases: 1
    
     ---------------------------------------------
     Linkage phase configuration: 1
     log-likelihood: -123.7037
     LOD: 0
    
     a b c d e f g h
     solcap_snp_c2_4408 o o o o o o o | 0.0
     solcap_snp_c2_21332 o o o | o o | | 0.7
     solcap_snp_c2_21314 o o o o o o o | 0.8
     solcap_snp_c2_4437 o o o | o o | | 0.9
     solcap_snp_c2_6674 | | | | | | | o 0.9
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     Number of markers: 5
     4 markers...
     • Trying sequence: 1 2 3 4 :
     1 phase(s): .
     5/5:(100%) 7: 1 ph (1/1) -- tail: 4 |||| |||•
     Markers in the initial sequence: 5
     Mapped markers : 5 (100%)
     Number of markers: 5
     4 markers...
     • Trying sequence: 1 2 3 4 :
     1 phase(s): .
     5/5:(100%) 7: 1 ph (1/1) -- tail: 4 |||| |||•
     Markers in the initial sequence: 5
     Mapped markers : 5 (100%)
     Ploidy level: 4
     Rec. Frac. Limit: 0.5
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.019 0.007 0.012 0.007
     Iter: 2 0.028 0.006 0.015 0.008
     Iter: 3 0.032 0.005 0.016 0.009
     Iter: 4 0.034 0.005 0.017 0.010
     Iter: 5 0.036 0.004 0.017 0.011
     Iter: 6 0.036 0.004 0.017 0.011
     Iter: 7 0.037 0.003 0.017 0.012
     Iter: 8 0.037 0.003 0.017 0.013
     Iter: 9 0.037 0.003 0.016 0.013
     Iter: 10 0.037 0.002 0.016 0.014
     Iter: 11 0.037 0.002 0.016 0.014
     Iter: 12 0.037 0.002 0.016 0.014
     Iter: 13 0.037 0.002 0.016 0.015
     Iter: 14 0.038 0.002 0.016 0.015
     Iter: 15 0.038 0.002 0.016 0.015
     Iter: 16 0.038 0.002 0.016 0.015
     Iter: 17 0.038 0.002 0.016 0.016
     Iter: 18 0.038 0.002 0.016 0.016
     Iter: 19 0.038 0.002 0.016 0.016
     Iter: 20 0.038 0.002 0.016 0.016
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.001 0.005
     Iter: 2 0.024 0.000 0.001 0.007
     Iter: 3 0.028 0.000 0.000 0.008
     Iter: 4 0.030 0.000 0.000 0.008
     Iter: 5 0.030 0.000 0.000 0.008
     Iter: 6 0.031 0.000 0.000 0.008
     Iter: 7 0.031 0.000 0.000 0.008
     Iter: 8 0.031 0.000 0.000 0.008
     "Marker Name","LG","Ref Chrom","Ref Position","Ref Allele","Alt Allele","Map Position","Dose in P1","Dose in P2","ph.P.a","ph.P.b","ph.P.c","ph.P.d","ph.Q.e","ph.Q.f","ph.Q.g","ph.Q.h"
     "solcap_snp_c2_51460",1,"1", 151147,NA,NA, 0.00,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_36608",1,"1", 251032,NA,NA, 3.20,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_36615",1,"1", 252977,NA,NA, 3.21,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_36658",1,"1", 269300,NA,NA, 3.22,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_10930",1,"1", 309242,NA,NA, 3.92,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_36629",1,"1", 433701,NA,NA, 4.62,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_10915",1,"1", 481195,NA,NA, 5.56,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c1_10918",1,"1", 496966,NA,NA, 6.18,1,2,0,1,0,0,0,1,1,0
     "solcap_snp_c2_36650",1,"1", 507322,NA,NA, 7.67,1,2,0,1,0,0,0,1,1,0
     "solcap_snp_c2_36643",1,"1", 508489,NA,NA, 8.71,2,2,0,0,1,1,1,0,0,1
     "solcap_snp_c2_36660",1,"1", 534726,NA,NA, 9.12,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_36664",1,"1", 535354,NA,NA, 9.40,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c2_36686",1,"1", 601257,NA,NA, 9.41,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_54803",1,"1", 811809,NA,NA, 9.92,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c2_54800",1,"1", 813297,NA,NA, 9.93,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c2_54797",1,"1", 817305,NA,NA, 10.46,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_56714",1,"1", 931273,NA,NA, 10.47,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_6865",1,"1", 1513756,NA,NA, 12.72,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_6683",1,"1", 1828357,NA,NA, 15.31,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c1_2417",1,"1", 1838764,NA,NA, 15.32,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_6713",1,"1", 2068205,NA,NA, 15.58,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21098",1,"1", 2589396,NA,NA, 17.78,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21100",1,"1", 2591241,NA,NA, 19.16,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21233",1,"1", 2956217,NA,NA, 21.10,2,1,0,1,0,1,0,1,0,0
     "solcap_snp_c1_6704",1,"1", 2957498,NA,NA, 21.20,1,2,0,0,1,0,0,1,1,0
     "solcap_snp_c2_21236",1,"1", 2958510,NA,NA, 22.07,3,2,0,1,1,1,0,1,1,0
     "solcap_snp_c1_6123",1,"1", 3296081,NA,NA, 25.79,2,2,1,0,1,0,0,1,1,0
     "solcap_snp_c1_6114",1,"1", 3693321,NA,NA, 25.97,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_6109",1,"1", 3716835,NA,NA, 26.67,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_51791",1,"1", 4309511,NA,NA, 31.96,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_49938",1,"1", 4597936,NA,NA, 31.97,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_56125",1,"1", 5291666,NA,NA, 34.56,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_45058",1,"1", 5347412,NA,NA, 35.15,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_45071",1,"1", 5386765,NA,NA, 36.19,3,1,1,1,0,1,1,0,0,0
     "solcap_snp_c2_45064",1,"1", 5502148,NA,NA, 36.69,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_13289",1,"1", 5504921,NA,NA, 36.70,2,3,1,0,0,1,0,1,1,1
     "solcap_snp_c1_13293",1,"1", 5505413,NA,NA, 36.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_27877",1,"1", 6071274,NA,NA, 38.46,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_27878",1,"1", 6071298,NA,NA, 38.47,1,1,0,0,0,1,1,0,0,0
     "solcap_snp_c2_27882",1,"1", 6071676,NA,NA, 38.73,3,1,0,1,1,1,1,0,0,0
     "solcap_snp_c2_27884",1,"1", 6071778,NA,NA, 38.74,3,1,0,1,1,1,1,0,0,0
     "solcap_snp_c2_27885",1,"1", 6071817,NA,NA, 39.13,0,3,0,0,0,0,0,1,1,1
     "solcap_snp_c2_27903",1,"1", 6295642,NA,NA, 40.12,2,3,0,1,0,1,0,1,1,1
     "solcap_snp_c2_27918",1,"1", 6587772,NA,NA, 40.56,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_48155",1,"1", 7165330,NA,NA, 41.98,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_48154",1,"1", 7165840,NA,NA, 42.33,2,3,0,1,0,1,0,1,1,1
     "solcap_snp_c2_50011",1,"1", 7446981,NA,NA, 42.34,2,3,1,0,1,0,0,1,1,1
     "solcap_snp_c1_16312",1,"1", 7641280,NA,NA, 43.72,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52709",1,"1", 8645609,NA,NA, 44.63,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52712",1,"1", 8645693,NA,NA, 44.64,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52705",1,"1", 8653609,NA,NA, 45.12,2,1,0,1,0,1,0,1,0,0
     "solcap_snp_c2_48549",1,"1",10570936,NA,NA, 52.54,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_48563",1,"1",10573573,NA,NA, 52.55,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_55639",1,"1",11235975,NA,NA, 52.56,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_56356",1,"1",11737675,NA,NA, 52.57,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_56359",1,"1",11742617,NA,NA, 52.81,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_57284",1,"1",11774518,NA,NA, 53.18,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_45637",1,"1",12022263,NA,NA, 53.55,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_55008",1,"1",12994177,NA,NA, 57.69,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_53521",1,"1",13266849,NA,NA, 57.70,2,2,0,1,0,1,0,0,1,1
     "solcap_snp_c2_43984",1,"1",13369857,NA,NA, 57.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_12938",1,"1",13392343,NA,NA, 58.21,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_43970",1,"1",13545289,NA,NA, 59.61,1,1,0,1,0,0,0,0,1,0
     "solcap_snp_c2_43973",1,"1",13547044,NA,NA, 60.07,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c1_8908",1,"1",13656016,NA,NA, 60.91,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_54355",1,"1",13740719,NA,NA, 63.95,2,2,1,0,1,0,0,1,0,1
     "solcap_snp_c2_54353",1,"1",13747285,NA,NA, 66.18,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_49867",1,"1",16399117,NA,NA, 66.19,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_48568",1,"1",17370536,NA,NA, 66.20,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c1_8593",1,"1",17664021,NA,NA, 66.21,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_53759",1,"1",18753871,NA,NA, 66.22,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_56842",1,"1",18925684,NA,NA, 66.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c1_16421",1,"1",18926984,NA,NA, 66.59,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_14663",1,"1",19664067,NA,NA, 66.71,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_49326",1,"1",20549734,NA,NA, 68.28,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c1_5477",1,"1",23657080,NA,NA, 68.29,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_43643",1,"1",29180891,NA,NA, 69.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_22549",1,"1",29678234,NA,NA, 69.24,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_22546",1,"1",29679750,NA,NA, 69.25,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_7136",1,"1",30125081,NA,NA, 69.59,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_11066",1,"1",32091982,NA,NA, 69.93,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_9378",1,"1",34098178,NA,NA, 70.23,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_27683",1,"1",37067385,NA,NA, 70.27,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_27677",1,"1",37071329,NA,NA, 70.59,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42829",1,"1",38478335,NA,NA, 71.26,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_15714",1,"1",39325633,NA,NA, 71.51,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_45395",1,"1",39529256,NA,NA, 71.81,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_49732",1,"1",41859322,NA,NA, 73.88,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_14648",1,"1",41947283,NA,NA, 73.89,4,1,1,1,1,1,0,1,0,0
     "solcap_snp_c1_14654",1,"1",41979022,NA,NA, 73.90,4,1,1,1,1,1,0,1,0,0
     "solcap_snp_c2_32111",1,"1",42197632,NA,NA, 73.91,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_32112",1,"1",42197668,NA,NA, 74.94,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_50028",1,"1",43180567,NA,NA, 76.56,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_50023",1,"1",43196126,NA,NA, 77.18,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_49042",1,"1",43330828,NA,NA, 78.19,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_16169",1,"1",44194024,NA,NA, 81.89,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_14248",1,"1",44696488,NA,NA, 81.90,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c1_14249",1,"1",44696500,NA,NA, 82.40,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_14259",1,"1",44700858,NA,NA, 82.41,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_14261",1,"1",44702300,NA,NA, 82.42,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c2_53708",1,"1",44890351,NA,NA, 83.08,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_40131",1,"1",45751390,NA,NA, 83.09,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_54811",1,"1",46271054,NA,NA, 83.10,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_15855",1,"1",46323471,NA,NA, 83.11,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_35220",1,"1",47299682,NA,NA, 83.12,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_35218",1,"1",47300005,NA,NA, 83.13,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_35601",1,"1",50791085,NA,NA, 85.14,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_694",1,"1",51290105,NA,NA, 85.74,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_686",1,"1",51324458,NA,NA, 85.80,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c2_57898",1,"1",51736618,NA,NA, 85.81,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_880",1,"1",54480981,NA,NA, 86.14,4,3,1,1,1,1,1,1,1,0
     "solcap_snp_c2_55113",1,"1",54580381,NA,NA, 86.15,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_2874",1,"1",55163851,NA,NA, 86.16,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_55621",1,"1",55427211,NA,NA, 86.17,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_55618",1,"1",55427602,NA,NA, 86.35,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c1_14633",1,"1",57931788,NA,NA, 91.38,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_2721",1,"1",58197548,NA,NA, 91.39,1,1,0,0,0,1,1,0,0,0
     "solcap_snp_c2_2653",1,"1",58737622,NA,NA, 92.93,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_2591",1,"1",58985511,NA,NA, 93.92,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_13430",1,"1",59363361,NA,NA, 95.09,1,3,0,1,0,0,1,0,1,1
     "solcap_snp_c2_46523",1,"1",59973949,NA,NA, 95.82,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_46521",1,"1",59974282,NA,NA, 95.83,2,3,1,0,1,0,1,1,1,0
     "solcap_snp_c2_46520",1,"1",59974316,NA,NA, 95.84,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_53347",1,"1",60026944,NA,NA, 96.47,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_35511",1,"1",60433785,NA,NA, 96.48,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35518",1,"1",60512480,NA,NA, 96.49,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35520",1,"1",60513199,NA,NA, 96.50,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35536",1,"1",60515867,NA,NA, 97.95,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_35537",1,"1",60516874,NA,NA, 97.96,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_43926",1,"1",60887837,NA,NA, 98.27,2,2,0,1,0,1,1,0,0,1
     "solcap_snp_c2_56267",1,"1",60919490,NA,NA, 99.07,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c2_20798",1,"1",60951573,NA,NA, 99.08,2,2,1,1,0,0,0,1,1,0
     "solcap_snp_c2_20799",1,"1",60951606,NA,NA, 99.29,2,2,0,0,1,1,1,0,0,1
     "solcap_snp_c2_20803",1,"1",60987155,NA,NA, 99.52,1,2,0,0,0,1,1,0,0,1
     "solcap_snp_c2_20890",1,"1",61310805,NA,NA,101.03,3,3,1,1,1,0,1,1,1,0
     "solcap_snp_c2_50903",1,"1",61774492,NA,NA,101.77,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_38428",1,"1",62058660,NA,NA,102.74,1,1,0,0,0,1,0,0,0,1
     "solcap_snp_c2_38406",1,"1",62144916,NA,NA,103.16,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_38404",1,"1",62148178,NA,NA,103.17,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c2_38448",1,"1",62289476,NA,NA,104.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_12106",1,"1",62802674,NA,NA,106.27,1,3,0,0,0,1,1,0,1,1
     "solcap_snp_c2_41337",1,"1",62930793,NA,NA,106.84,1,3,0,0,0,1,1,0,1,1
     "solcap_snp_c2_32359",1,"1",63208419,NA,NA,108.73,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_9679",1,"1",63338027,NA,NA,110.16,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_12057",1,"1",63596472,NA,NA,111.12,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_13686",1,"1",64120988,NA,NA,113.01,2,3,0,0,1,1,1,0,1,1
     "solcap_snp_c2_46195",1,"1",64259858,NA,NA,113.66,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_13751",1,"1",64614114,NA,NA,113.95,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_4415",1,"1",65036984,NA,NA,116.70,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c2_13675",1,"1",65036993,NA,NA,116.94,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_13676",1,"1",65054301,NA,NA,116.95,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_13671",1,"1",65062849,NA,NA,116.96,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c2_13653",1,"1",65270150,NA,NA,117.37,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c2_13650",1,"1",65277543,NA,NA,117.38,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_4744",1,"1",65472678,NA,NA,118.20,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_14467",1,"1",65694581,NA,NA,118.81,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14470",1,"1",65697018,NA,NA,118.83,2,4,1,0,0,1,1,1,1,1
     "solcap_snp_c1_4706",1,"1",65780052,NA,NA,119.64,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14487",1,"1",65780861,NA,NA,119.65,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14489",1,"1",65781907,NA,NA,119.66,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14491",1,"1",65782311,NA,NA,119.69,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_14492",1,"1",65782372,NA,NA,119.70,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_14493",1,"1",65782860,NA,NA,120.27,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_4745",1,"1",66094082,NA,NA,123.09,2,2,1,0,0,1,1,1,0,0
     "solcap_snp_c1_4748",1,"1",66259325,NA,NA,123.10,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14589",1,"1",66283156,NA,NA,123.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_37564",1,"1",66307265,NA,NA,123.24,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_14595",1,"1",66307870,NA,NA,123.66,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_37566",1,"1",66307870,NA,NA,123.67,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_4752",1,"1",66336597,NA,NA,124.20,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14608",1,"1",66349497,NA,NA,124.47,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_4757",1,"1",66354237,NA,NA,124.83,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_4763",1,"1",66376115,NA,NA,124.84,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c1_5150",1,"1",66675718,NA,NA,127.51,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_58099",1,"1",66845540,NA,NA,127.69,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_5145",1,"1",66904071,NA,NA,127.70,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_20569",1,"1",67013419,NA,NA,132.36,3,1,1,1,1,0,0,0,1,0
     "solcap_snp_c2_20501",1,"1",67211402,NA,NA,136.36,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c2_20502",1,"1",67221811,NA,NA,137.02,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c2_20505",1,"1",67223365,NA,NA,138.09,3,2,0,1,1,1,0,0,1,1
     "solcap_snp_c2_20506",1,"1",67223618,NA,NA,139.27,3,3,0,1,1,1,1,0,1,1
     "solcap_snp_c2_20508",1,"1",67224636,NA,NA,139.92,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_20513",1,"1",67277917,NA,NA,140.32,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_20521",1,"1",67293276,NA,NA,140.85,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_20522",1,"1",67294203,NA,NA,141.34,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_6501",1,"1",67459562,NA,NA,142.30,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_6518",1,"1",67605601,NA,NA,142.31,2,2,0,1,0,1,0,0,1,1
     "solcap_snp_c2_13766",1,"1",67896690,NA,NA,142.32,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_52492",1,"1",67969508,NA,NA,143.43,3,2,1,1,0,1,0,0,1,1
     "solcap_snp_c2_52484",1,"1",68069976,NA,NA,144.07,1,2,0,0,1,0,1,1,0,0
     "solcap_snp_c2_49451",1,"1",68416146,NA,NA,145.42,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_14044",1,"1",68529607,NA,NA,146.51,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_51055",1,"1",68950490,NA,NA,147.79,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c1_11769",1,"1",69200071,NA,NA,148.59,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_39834",1,"1",69381232,NA,NA,149.22,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_17592",1,"1",69809943,NA,NA,150.28,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_17529",1,"1",69902111,NA,NA,150.29,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_17531",1,"1",70016341,NA,NA,151.13,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_17537",1,"1",70097616,NA,NA,151.14,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c1_15579",1,"1",70341165,NA,NA,151.68,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c1_15580",1,"1",70341195,NA,NA,151.91,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c2_53380",1,"1",70371798,NA,NA,152.63,3,2,0,1,1,1,0,0,1,1
     "solcap_snp_c2_53381",1,"1",70372029,NA,NA,153.40,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c2_17191",1,"1",70474751,NA,NA,153.41,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_5657",1,"1",70560319,NA,NA,154.13,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c1_5656",1,"1",70562884,NA,NA,154.14,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_5653",1,"1",70697401,NA,NA,154.15,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_3860",1,"1",71009488,NA,NA,155.37,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c1_3863",1,"1",71009686,NA,NA,156.05,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_12076",1,"1",71090664,NA,NA,156.55,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_3867",1,"1",71239298,NA,NA,157.43,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_3868",1,"1",71239559,NA,NA,157.65,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_3876",1,"1",71278255,NA,NA,158.09,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_12106",1,"1",71298195,NA,NA,158.31,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_3894",1,"1",71421320,NA,NA,158.74,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_12126",1,"1",71450592,NA,NA,159.39,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_12216",1,"1",72051429,NA,NA,160.94,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_12217",1,"1",72051456,NA,NA,160.97,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_3848",1,"1",72108418,NA,NA,160.98,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_3851",1,"1",72112064,NA,NA,160.99,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_9565",1,"1",72320561,NA,NA,162.31,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_9566",1,"1",72320582,NA,NA,162.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_9573",1,"1",72504567,NA,NA,162.33,2,2,0,1,1,0,0,0,1,1
     "solcap_snp_c2_31820",1,"1",72528671,NA,NA,163.44,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_31821",1,"1",72531263,NA,NA,163.45,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_9583",1,"1",72540600,NA,NA,163.66,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c1_9587",1,"1",72541075,NA,NA,163.67,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_14274",1,"1",74061621,NA,NA,166.55,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c1_4617",1,"1",74355434,NA,NA,168.09,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_14365",1,"1",74688262,NA,NA,168.11,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14366",1,"1",74688318,NA,NA,168.54,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c1_14931",1,"1",75007319,NA,NA,168.55,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_16369",1,"1",75164058,NA,NA,169.98,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c1_5267",1,"1",75333553,NA,NA,170.01,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_5281",1,"1",75441912,NA,NA,170.02,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_5286",1,"1",75477570,NA,NA,170.90,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_16424",1,"1",75478258,NA,NA,171.43,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_16425",1,"1",75485276,NA,NA,171.73,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_16466",1,"1",75749019,NA,NA,171.74,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c1_5346",1,"1",75789912,NA,NA,172.18,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_16435",1,"1",76304406,NA,NA,172.61,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c2_2509",1,"1",76406745,NA,NA,172.62,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_2291",1,"1",76480645,NA,NA,173.91,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_641",1,"1",76511147,NA,NA,173.93,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_2420",1,"1",76953005,NA,NA,175.04,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_2423",1,"1",76958677,NA,NA,175.41,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_2424",1,"1",76960116,NA,NA,176.33,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_2427",1,"1",76960344,NA,NA,177.73,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c2_2450",1,"1",77056087,NA,NA,177.96,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2463",1,"1",77190863,NA,NA,178.95,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2464",1,"1",77190891,NA,NA,178.96,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2466",1,"1",77191250,NA,NA,179.19,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2505",1,"1",77350779,NA,NA,179.67,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_2508",1,"1",77353050,NA,NA,180.18,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_758",1,"1",77526728,NA,NA,180.52,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_2201",1,"1",77738922,NA,NA,180.88,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_601",1,"1",78168030,NA,NA,182.58,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_607",1,"1",78176086,NA,NA,182.59,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2299",1,"1",78192398,NA,NA,183.05,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_2354",1,"1",78430745,NA,NA,183.73,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_50486",1,"1",78756800,NA,NA,184.18,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50484",1,"1",78757017,NA,NA,184.41,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50483",1,"1",78757327,NA,NA,184.64,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50502",1,"1",78809381,NA,NA,184.88,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c1_15872",1,"1",78928170,NA,NA,185.35,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_7007",1,"1",79083850,NA,NA,189.67,2,2,1,0,1,0,0,1,1,0
     "solcap_snp_c1_2484",1,"1",79157311,NA,NA,193.43,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_7094",1,"1",79187093,NA,NA,193.46,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_7193",1,"1",79391798,NA,NA,193.94,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_7208",1,"1",79456001,NA,NA,197.09,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c1_2519",1,"1",79487369,NA,NA,197.10,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c1_2520",1,"1",79487485,NA,NA,197.40,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_7241",1,"1",79678600,NA,NA,197.59,3,3,1,1,0,1,1,0,1,1
     "solcap_snp_c2_7242",1,"1",79679061,NA,NA,197.60,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_7245",1,"1",79679433,NA,NA,197.96,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_7246",1,"1",79679919,NA,NA,198.32,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c1_2531",1,"1",79711129,NA,NA,198.33,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_7328",1,"1",79955769,NA,NA,199.81,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_6990",1,"1",80077222,NA,NA,200.92,2,3,1,0,0,1,0,1,1,1
     "solcap_snp_c1_2458",1,"1",80121157,NA,NA,200.93,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_7053",1,"1",80228512,NA,NA,202.00,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7055",1,"1",80229751,NA,NA,203.13,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7056",1,"1",80229823,NA,NA,203.59,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_7061",1,"1",80230621,NA,NA,204.94,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7062",1,"1",80230636,NA,NA,204.95,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c1_1853",1,"1",80429124,NA,NA,205.22,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_5091",1,"1",80558977,NA,NA,206.13,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_5077",1,"1",80591992,NA,NA,207.68,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_5078",1,"1",80592039,NA,NA,208.01,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_5039",1,"1",80669402,NA,NA,209.26,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_9727",1,"1",80833354,NA,NA,209.27,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_9726",1,"1",80833555,NA,NA,209.28,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_9722",1,"1",80835882,NA,NA,209.91,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_9988",1,"1",81013079,NA,NA,212.06,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_9925",1,"1",81410356,NA,NA,212.44,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_9892",1,"1",81567397,NA,NA,215.81,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_9864",1,"1",81615881,NA,NA,215.82,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c1_3275",1,"1",81750527,NA,NA,217.23,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_3255",1,"1",81795335,NA,NA,217.88,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c1_3241",1,"1",81924813,NA,NA,219.27,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_3234",1,"1",81927346,NA,NA,219.38,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_47360",1,"1",82220028,NA,NA,221.34,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4896",1,"1",82628961,NA,NA,222.55,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_4799",1,"1",82927941,NA,NA,222.86,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_1638",1,"1",82935846,NA,NA,222.87,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_1653",1,"1",83012188,NA,NA,225.35,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c1_1683",1,"1",83059366,NA,NA,226.88,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4844",1,"1",83060466,NA,NA,227.75,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c2_4845",1,"1",83060720,NA,NA,229.69,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4860",1,"1",83130390,NA,NA,229.71,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_4864",1,"1",83138355,NA,NA,230.11,2,4,0,1,0,1,1,1,1,1
     "solcap_snp_c2_4875",1,"1",83177618,NA,NA,231.71,3,1,1,1,1,0,1,0,0,0
     "solcap_snp_c2_4884",1,"1",83186994,NA,NA,232.67,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_4885",1,"1",83187000,NA,NA,232.90,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_4898",1,"1",83283573,NA,NA,232.91,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4904",1,"1",83416355,NA,NA,234.34,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4907",1,"1",83418574,NA,NA,236.34,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4910",1,"1",83419340,NA,NA,237.80,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_1737",1,"1",83602469,NA,NA,238.45,2,3,0,1,0,1,1,0,1,1
     "solcap_snp_c1_1739",1,"1",83608625,NA,NA,240.68,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_4614",1,"1",83843457,NA,NA,240.69,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_4664",1,"1",84062694,NA,NA,242.21,1,3,0,0,0,1,0,1,1,1
     "solcap_snp_c2_4708",1,"1",84214693,NA,NA,244.20,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_4713",1,"1",84217673,NA,NA,244.21,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_36495",1,"1",84457206,NA,NA,244.46,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_34546",1,"1",84727952,NA,NA,246.10,1,3,0,0,0,1,0,1,1,1
     "solcap_snp_c1_10354",1,"1",84979069,NA,NA,251.03,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_22",1,"1",85243830,NA,NA,251.60,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_24",1,"1",85323495,NA,NA,255.50,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_13385",1,"1",85715515,NA,NA,256.96,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_46448",1,"1",85760106,NA,NA,256.97,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_53075",1,"1",85902499,NA,NA,257.70,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_42943",1,"1",85953353,NA,NA,258.40,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_49917",1,"1",86090288,NA,NA,258.41,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_49911",1,"1",86095463,NA,NA,258.42,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_49910",1,"1",86095890,NA,NA,258.43,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14839",1,"1",86328984,NA,NA,260.84,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14707",1,"1",86355213,NA,NA,260.85,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14708",1,"1",86356234,NA,NA,262.85,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14709",1,"1",86356378,NA,NA,262.86,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_4796",1,"1",86388041,NA,NA,263.11,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14730",1,"1",86441357,NA,NA,266.54,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14733",1,"1",86527670,NA,NA,267.31,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_4799",1,"1",86663770,NA,NA,269.34,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14761",1,"1",86750111,NA,NA,270.26,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14762",1,"1",86750599,NA,NA,270.54,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14763",1,"1",86847560,NA,NA,270.82,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14764",1,"1",86847664,NA,NA,271.20,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14772",1,"1",86877778,NA,NA,271.58,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14779",1,"1",86887803,NA,NA,274.05,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_4803",1,"1",86942483,NA,NA,276.39,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14827",1,"1",87096629,NA,NA,277.06,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14840",1,"1",87161581,NA,NA,278.23,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_14841",1,"1",87161695,NA,NA,279.54,3,3,1,0,1,1,0,1,1,1
     "solcap_snp_c2_14848",1,"1",87196823,NA,NA,280.06,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c2_37836",1,"1",87392825,NA,NA,282.11,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_37820",1,"1",87463711,NA,NA,282.12,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_11288",1,"1",87558384,NA,NA,282.13,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_11308",1,"1",87663528,NA,NA,287.31,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_37850",1,"1",87731594,NA,NA,287.32,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_37816",1,"1",87746020,NA,NA,288.43,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_9428",1,"1",87944667,NA,NA,298.18,3,1,1,1,1,0,0,1,0,0
     "solcap_snp_c1_9430",1,"1",87965033,NA,NA,302.34,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_22105",1,"1",88057376,NA,NA,306.51,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_9413",1,"1",88294049,NA,NA,309.12,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_9406",1,"1",88347489,NA,NA,309.94,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_30963",1,"1",88362769,NA,NA,313.20,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_30961",1,"1",88389459,NA,NA,313.21,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_9397",1,"1",88409394,NA,NA,314.43,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_9392",1,"1",88434818,NA,NA,314.44,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_30958",1,"1",88451845,NA,NA,316.36,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_30956",1,"1",88452032,NA,NA,316.37,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_30955",1,"1",88452236,NA,NA,316.38,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_1504",2,"2", 4479289,NA,NA, 0.00,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_4344",2,"2", 4884993,NA,NA, 0.49,0,3,0,0,0,0,1,1,1,0
     "solcap_snp_c2_4354",2,"2", 5159401,NA,NA, 0.65,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_48725",2,"2", 5510874,NA,NA, 0.65,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_3750",2,"2", 6090174,NA,NA, 1.63,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_11591",2,"2", 6647886,NA,NA, 2.61,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_3747",2,"2", 7050814,NA,NA, 2.82,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_4515",2,"2", 8246308,NA,NA, 3.03,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_14690",2,"2", 8398966,NA,NA, 3.03,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_14648",2,"2", 8799627,NA,NA, 3.47,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c1_4792",2,"2", 8802985,NA,NA, 4.42,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_14645",2,"2", 9338437,NA,NA, 5.05,2,0,0,0,1,1,0,0,0,0
     "solcap_snp_c2_730",2,"2",12188889,NA,NA, 5.70,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_41887",2,"2",15292858,NA,NA, 6.44,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_47096",2,"2",16846846,NA,NA, 8.89,0,3,0,0,0,0,0,1,1,1
     "solcap_snp_c2_17387",2,"2",20193366,NA,NA, 9.64,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_17427",2,"2",20681191,NA,NA, 11.77,3,0,1,1,1,0,0,0,0,0
     "solcap_snp_c2_17428",2,"2",20681220,NA,NA, 12.45,1,3,0,0,0,1,1,1,0,1
     "solcap_snp_c1_5739",2,"2",20681710,NA,NA, 13.09,3,0,1,1,1,0,0,0,0,0
     "solcap_snp_c1_11344",2,"2",21725517,NA,NA, 18.09,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_38022",2,"2",22006999,NA,NA, 18.88,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_32421",2,"2",22621554,NA,NA, 21.89,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_9719",2,"2",22749359,NA,NA, 22.13,0,3,0,0,0,0,1,1,0,1
     "solcap_snp_c2_39705",2,"2",23426100,NA,NA, 25.47,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_39677",2,"2",23550342,NA,NA, 26.12,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_37256",2,"2",23737215,NA,NA, 27.42,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_11122",2,"2",23799802,NA,NA, 27.43,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_33996",2,"2",24149138,NA,NA, 30.38,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_53818",2,"2",24744880,NA,NA, 30.38,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_15402",2,"2",24899862,NA,NA, 31.49,4,1,1,1,1,1,0,0,1,0
     "solcap_snp_c2_52630",2,"2",24910552,NA,NA, 34.48,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_21752",2,"2",25050163,NA,NA, 36.52,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_6841",2,"2",25051854,NA,NA, 37.05,4,1,1,1,1,1,0,0,1,0
     "solcap_snp_c2_21746",2,"2",25072703,NA,NA, 37.40,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_21722",2,"2",25322160,NA,NA, 38.34,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_21717",2,"2",25423184,NA,NA, 40.23,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c1_9369",2,"2",26798985,NA,NA, 42.18,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_45392",2,"2",27065211,NA,NA, 42.79,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_45307",2,"2",27086772,NA,NA, 43.77,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_45310",2,"2",27088140,NA,NA, 43.93,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_45311",2,"2",27088340,NA,NA, 44.25,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_13459",2,"2",27143875,NA,NA, 45.22,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13465",2,"2",27190187,NA,NA, 45.92,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_12339",2,"2",27411139,NA,NA, 45.94,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_12345",2,"2",27412322,NA,NA, 46.50,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_12305",2,"2",27458950,NA,NA, 46.91,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_12310",2,"2",27553365,NA,NA, 47.61,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_41980",2,"2",27557427,NA,NA, 48.15,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_12330",2,"2",27618598,NA,NA, 48.15,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42059",2,"2",27676633,NA,NA, 48.15,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_38940",2,"2",27856761,NA,NA, 48.63,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_38938",2,"2",27860023,NA,NA, 49.54,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_38936",2,"2",27860101,NA,NA, 49.88,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_11556",2,"2",28039994,NA,NA, 50.06,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_38952",2,"2",28230312,NA,NA, 52.01,4,1,1,1,1,1,0,0,0,1
     "solcap_snp_c2_19692",2,"2",28745987,NA,NA, 54.82,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_5091",2,"2",28830938,NA,NA, 55.63,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_5088",2,"2",28832209,NA,NA, 55.63,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_15749",2,"2",28938673,NA,NA, 56.86,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_48238",2,"2",29093635,NA,NA, 56.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_48237",2,"2",29093750,NA,NA, 56.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_14280",2,"2",29136032,NA,NA, 56.86,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_48195",2,"2",29136966,NA,NA, 58.21,3,1,1,0,1,1,1,0,0,0
     "solcap_snp_c1_14293",2,"2",29163304,NA,NA, 59.03,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_39155",2,"2",29312895,NA,NA, 59.03,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_39135",2,"2",29416066,NA,NA, 61.45,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_51113",2,"2",29665174,NA,NA, 61.69,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13912",2,"2",29883519,NA,NA, 63.21,1,2,0,1,0,0,0,1,0,1
     "solcap_snp_c2_46903",2,"2",29922714,NA,NA, 63.51,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_46904",2,"2",29922763,NA,NA, 63.51,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13929",2,"2",29928927,NA,NA, 63.80,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_46909",2,"2",29929969,NA,NA, 64.06,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_13910",2,"2",29990872,NA,NA, 64.32,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_13911",2,"2",30022458,NA,NA, 64.32,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_46885",2,"2",30044742,NA,NA, 64.33,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_46887",2,"2",30044882,NA,NA, 64.33,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_46898",2,"2",30147247,NA,NA, 64.62,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_7469",2,"2",30364207,NA,NA, 65.87,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_7412",2,"2",30401330,NA,NA, 66.50,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_7430",2,"2",30480570,NA,NA, 67.07,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_23170",2,"2",30785563,NA,NA, 68.54,1,3,0,1,0,0,1,0,1,1
     "solcap_snp_c2_23188",2,"2",31021446,NA,NA, 69.23,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_23192",2,"2",31060240,NA,NA, 70.07,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_54732",2,"2",31205330,NA,NA, 70.53,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_41534",2,"2",31571193,NA,NA, 71.69,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_13236",2,"2",31663185,NA,NA, 71.70,3,1,1,0,1,1,0,1,0,0
     "solcap_snp_c1_13233",2,"2",31714504,NA,NA, 71.70,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_39191",2,"2",32084708,NA,NA, 72.91,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c1_11581",2,"2",32220207,NA,NA, 74.63,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44771",2,"2",32647466,NA,NA, 75.14,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_44774",2,"2",32668501,NA,NA, 75.61,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44776",2,"2",32669850,NA,NA, 75.61,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44778",2,"2",32671297,NA,NA, 75.82,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44768",2,"2",32806437,NA,NA, 76.46,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_44769",2,"2",32820718,NA,NA, 76.70,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_44770",2,"2",32822882,NA,NA, 76.70,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_13051",2,"2",33076397,NA,NA, 76.70,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c1_4192",2,"2",33204619,NA,NA, 78.22,2,1,0,0,1,1,0,1,0,0
     "solcap_snp_c2_51998",2,"2",33270668,NA,NA, 78.76,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_51985",2,"2",33352028,NA,NA, 80.22,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_51990",2,"2",33357450,NA,NA, 80.23,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_48784",2,"2",33668370,NA,NA, 82.72,3,3,1,1,1,0,0,1,1,1
     "solcap_snp_c2_47037",2,"2",33978883,NA,NA, 85.33,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c1_12264",2,"2",34171806,NA,NA, 86.01,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_33141",2,"2",34594739,NA,NA, 88.89,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_33108",2,"2",34739225,NA,NA, 88.90,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_40155",2,"2",35112346,NA,NA, 90.03,2,3,0,0,1,1,1,1,1,0
     "solcap_snp_c2_50570",2,"2",35399177,NA,NA, 91.75,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_50394",2,"2",35549597,NA,NA, 92.94,2,1,1,1,0,0,0,0,0,1
     "solcap_snp_c2_50391",2,"2",35579108,NA,NA, 93.63,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_50412",2,"2",35600542,NA,NA, 93.63,4,3,1,1,1,1,1,1,1,0
     "solcap_snp_c2_50405",2,"2",35657756,NA,NA, 94.17,1,3,0,0,1,0,1,1,1,0
     "solcap_snp_c2_27433",2,"2",35990927,NA,NA, 94.67,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_27437",2,"2",36019472,NA,NA, 94.67,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_17973",2,"2",36229730,NA,NA, 95.07,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_17954",2,"2",36329410,NA,NA, 96.17,2,2,1,0,0,1,1,0,1,0
     "solcap_snp_c2_17938",2,"2",36364347,NA,NA, 96.74,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17937",2,"2",36364435,NA,NA, 96.99,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17935",2,"2",36364609,NA,NA, 97.09,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17932",2,"2",36364767,NA,NA, 97.18,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17930",2,"2",36364901,NA,NA, 97.18,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17926",2,"2",36365501,NA,NA, 97.38,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17925",2,"2",36365552,NA,NA, 97.79,2,2,0,1,1,0,0,1,0,1
     "solcap_snp_c2_17922",2,"2",36374598,NA,NA, 98.62,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17921",2,"2",36375406,NA,NA, 98.62,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17914",2,"2",36422560,NA,NA,100.07,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_17901",2,"2",36454929,NA,NA,101.33,2,1,1,0,0,1,1,0,0,0
     "solcap_snp_c2_17900",2,"2",36455067,NA,NA,101.95,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17899",2,"2",36455154,NA,NA,101.96,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17897",2,"2",36455571,NA,NA,101.96,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_17896",2,"2",36455607,NA,NA,101.96,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17895",2,"2",36455817,NA,NA,103.63,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_17816",2,"2",36728687,NA,NA,103.78,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_17809",2,"2",36799097,NA,NA,103.79,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_5846",2,"2",36959231,NA,NA,104.26,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_5845",2,"2",36959234,NA,NA,105.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_49495",2,"2",37017828,NA,NA,105.32,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c2_42169",2,"2",37438591,NA,NA,105.32,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_42172",2,"2",37439183,NA,NA,105.33,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c1_16170",2,"2",37474563,NA,NA,105.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_55632",2,"2",37474656,NA,NA,105.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_16171",2,"2",37475069,NA,NA,105.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_12373",2,"2",37530401,NA,NA,105.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_12382",2,"2",37654438,NA,NA,105.83,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_42241",2,"2",37676252,NA,NA,106.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35211",2,"2",37831945,NA,NA,106.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_10494",2,"2",37845965,NA,NA,106.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_10492",2,"2",37890758,NA,NA,106.83,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_10491",2,"2",37903554,NA,NA,107.24,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_35165",2,"2",37982943,NA,NA,108.38,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35139",2,"2",38046886,NA,NA,108.38,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_35113",2,"2",38121156,NA,NA,108.80,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_15466",2,"2",38386450,NA,NA,109.46,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53037",2,"2",38688112,NA,NA,109.46,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53036",2,"2",38688195,NA,NA,109.47,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53034",2,"2",38688354,NA,NA,109.47,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53033",2,"2",38688468,NA,NA,109.88,2,1,1,0,0,1,0,1,0,0
     "solcap_snp_c1_11955",2,"2",38837510,NA,NA,112.32,2,1,1,1,0,0,0,1,0,0
     "solcap_snp_c2_40635",2,"2",39073404,NA,NA,113.50,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_40638",2,"2",39073700,NA,NA,115.75,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42132",2,"2",39144989,NA,NA,115.75,1,3,0,0,1,0,1,0,1,1
     "solcap_snp_c2_42133",2,"2",39144999,NA,NA,115.75,1,3,0,0,1,0,1,0,1,1
     "solcap_snp_c2_42126",2,"2",39369111,NA,NA,115.80,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_42127",2,"2",39369213,NA,NA,115.80,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c1_8113",2,"2",39934151,NA,NA,120.10,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_8118",2,"2",39940655,NA,NA,120.12,2,3,0,0,1,1,1,0,1,1
     "solcap_snp_c1_8125",2,"2",39970010,NA,NA,120.19,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_25892",2,"2",40044441,NA,NA,122.61,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_25896",2,"2",40132579,NA,NA,122.66,3,3,1,0,1,1,1,0,1,1
     "solcap_snp_c2_25897",2,"2",40132705,NA,NA,122.66,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_25179",2,"2",40294633,NA,NA,123.40,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_7964",2,"2",40294982,NA,NA,126.16,3,3,1,1,1,0,1,1,0,1
     "solcap_snp_c2_7555",2,"2",41356969,NA,NA,128.16,0,2,0,0,0,0,0,1,1,0
     "solcap_snp_c2_7558",2,"2",41357718,NA,NA,128.59,0,2,0,0,0,0,0,1,1,0
     "solcap_snp_c2_7559",2,"2",41357748,NA,NA,128.59,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_7565",2,"2",41368149,NA,NA,129.00,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c1_2632",2,"2",41745246,NA,NA,130.15,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_2640",2,"2",41814961,NA,NA,130.65,2,3,0,0,1,1,1,1,1,0
     "solcap_snp_c1_2641",2,"2",41814973,NA,NA,131.72,2,1,0,0,1,1,1,0,0,0
     "solcap_snp_c1_2656",2,"2",41911152,NA,NA,133.37,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c1_2574",2,"2",42014614,NA,NA,133.68,2,3,1,1,0,0,0,1,1,1
     "solcap_snp_c2_7401",2,"2",42083055,NA,NA,136.14,3,3,0,1,1,1,1,0,1,1
     "solcap_snp_c2_7422",2,"2",42178610,NA,NA,137.92,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c1_2587",2,"2",42179852,NA,NA,138.59,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_7426",2,"2",42180225,NA,NA,139.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_57421",2,"2",42320846,NA,NA,141.09,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_16540",2,"2",42320852,NA,NA,141.19,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_15746",2,"2",42346419,NA,NA,142.45,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_22939",2,"2",42474531,NA,NA,144.58,2,1,1,1,0,0,0,0,0,1
     "solcap_snp_c1_7346",2,"2",42597250,NA,NA,146.12,2,2,1,1,0,0,1,0,0,1
     "solcap_snp_c2_22853",2,"2",42733575,NA,NA,146.95,3,2,0,1,1,1,0,1,1,0
     "solcap_snp_c1_7325",2,"2",42764357,NA,NA,147.64,1,1,1,0,0,0,0,0,0,1
     "solcap_snp_c2_27216",2,"2",43804789,NA,NA,152.13,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_27372",2,"2",44159308,NA,NA,155.23,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_27270",2,"2",44458161,NA,NA,155.71,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_27269",2,"2",44458317,NA,NA,155.71,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_27271",2,"2",44458644,NA,NA,158.41,2,3,0,0,1,1,1,1,0,1
     "solcap_snp_c1_8490",2,"2",44698531,NA,NA,160.85,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_43350",2,"2",44773146,NA,NA,162.25,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_43348",2,"2",44773305,NA,NA,163.47,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_12771",2,"2",44810386,NA,NA,164.70,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_43408",2,"2",44944594,NA,NA,164.70,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_12509",2,"2",45147157,NA,NA,165.43,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_42570",2,"2",45147640,NA,NA,165.43,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_14981",2,"2",45458650,NA,NA,168.41,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c1_4826",2,"2",45458875,NA,NA,168.42,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_4847",2,"2",45616677,NA,NA,168.43,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_15018",2,"2",45618297,NA,NA,170.53,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c1_4849",2,"2",45618958,NA,NA,170.88,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_15041",2,"2",45652545,NA,NA,172.61,2,3,0,0,1,1,1,1,0,1
     "solcap_snp_c2_15042",2,"2",45652553,NA,NA,175.68,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_15046",2,"2",45652811,NA,NA,175.68,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_15047",2,"2",45652877,NA,NA,176.03,1,1,0,1,0,0,0,1,0,0
     "solcap_snp_c2_15048",2,"2",45652958,NA,NA,176.28,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_15065",2,"2",45694316,NA,NA,176.45,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c1_4860",2,"2",45695631,NA,NA,176.60,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_15066",2,"2",45695637,NA,NA,176.76,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_4873",2,"2",45744372,NA,NA,176.88,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_4881",2,"2",45756458,NA,NA,176.88,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_7873",2,"2",46195290,NA,NA,177.44,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_7872",2,"2",46195303,NA,NA,178.19,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_7867",2,"2",46196437,NA,NA,179.89,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c1_7848",2,"2",46291502,NA,NA,179.89,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c1_7834",2,"2",46384191,NA,NA,181.66,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_24869",2,"2",46387342,NA,NA,182.20,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_47211",2,"2",46940997,NA,NA,182.20,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_47197",2,"2",47137310,NA,NA,184.36,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_47199",2,"2",47137738,NA,NA,184.36,3,3,1,0,1,1,1,0,1,1
     "solcap_snp_c2_47200",2,"2",47137863,NA,NA,187.30,2,0,0,0,1,1,0,0,0,0
     "solcap_snp_c2_47201",2,"2",47141179,NA,NA,188.15,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_10607",2,"2",47182635,NA,NA,189.23,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_10593",2,"2",47302272,NA,NA,193.87,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_35686",2,"2",47323948,NA,NA,193.87,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35687",2,"2",47324096,NA,NA,193.87,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35690",2,"2",47324235,NA,NA,193.87,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_35691",2,"2",47324287,NA,NA,194.70,0,3,0,0,0,0,1,1,0,1
     "solcap_snp_c2_35692",2,"2",47325069,NA,NA,194.70,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_35697",2,"2",47325513,NA,NA,195.66,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_35700",2,"2",47326506,NA,NA,196.63,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_35701",2,"2",47327334,NA,NA,196.63,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_35702",2,"2",47327423,NA,NA,196.63,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_35706",2,"2",47327566,NA,NA,197.84,1,1,0,1,0,0,0,1,0,0
     "solcap_snp_c1_11458",2,"2",47625835,NA,NA,200.53,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c1_11459",2,"2",47625847,NA,NA,201.80,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_38551",2,"2",47627255,NA,NA,201.81,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_38552",2,"2",47627384,NA,NA,201.81,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_38553",2,"2",47627420,NA,NA,201.95,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_38555",2,"2",47627603,NA,NA,202.72,1,2,0,1,0,0,1,0,0,1
     "solcap_snp_c1_5931",2,"2",48498256,NA,NA,206.31,2,3,1,1,0,0,1,0,1,1
     "solcap_snp_c1_5895",2,"2",48565009,NA,NA,206.32,1,1,1,0,0,0,0,0,1,0
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.001 0.005
     Iter: 2 0.024 0.000 0.001 0.007
     Iter: 3 0.028 0.000 0.000 0.008
     Iter: 4 0.030 0.000 0.000 0.008
     Iter: 5 0.030 0.000 0.000 0.008
     Iter: 6 0.031 0.000 0.000 0.008
     Iter: 7 0.031 0.000 0.000 0.008
     Iter: 8 0.031 0.000 0.000 0.008
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
    
     Linkage group 1 ...
     INFO: Going singlemode. Using one CPU for calculation.
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
    
     Linkage group 1 ...
     trying URL 'https://github.com/mmollina/MAPpoly_vignettes/raw/master/data/sweet_sample_ch3.vcf.gz'
     Content type 'text/plain; charset=utf-8' length 1416917 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading data...
     Scanning file to determine attributes.
     File attributes:
     meta lines: 8
     header_line: 9
     variant count: 200
     column count: 326
    
     Meta line 8 read in.
     All meta lines processed.
     gt matrix initialized.
     Character matrix gt created.
     Character matrix gt rows: 200
     Character matrix gt cols: 326
     skip: 0
     nrows: 200
     row_num: 0
    
     Processed variant: 200
     All variants processed
     Processing genotypes...Done!
     Selected ploidy: 6
     Done!
     Read the following data:
     Ploidy level: 6
     No. individuals: 315
     No. markers: 167
     No. informative markers: 167 (100%)
     This dataset contains chromosome information.
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     This is an object of class 'mappoly.data'
     Ploidy level: 6
     No. individuals: 315
     No. markers: 164
     Missing data under prob. threshold: 6.01%
     Redundant markers: 1.8%
    
     No. markers per chromosome: not available
     ----------
     No. of markers per dosage combination in both parents:
     P1 P2 freq
     0 1 50
     0 2 8
     0 3 4
     0 4 1
     1 0 26
     1 1 12
     1 2 9
     1 3 4
     1 4 1
     2 0 3
     2 1 10
     2 2 7
     2 3 7
     2 4 4
     3 0 3
     3 1 3
     3 2 7
     3 3 1
     4 0 1
     4 1 2
     4 2 1
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/SolCAP_dosage'
     Content type 'text/plain; charset=utf-8' length 1445956 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 160
     No. markers: 4017
     No. informative markers: 4017 (100%)
     ...
    
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/hexa_sample'
     Content type 'text/plain; charset=utf-8' length 142904 bytes (139 KB)
     ==================================================
     downloaded 139 KB
    
     Reading the following data:
     Ploidy level: 6
     No. individuals: 50
     No. markers: 100
     No. informative markers: 71 (71%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/tetra_solcap.csv'
     Content type 'text/plain; charset=utf-8' length 1448564 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 160
     No. markers: 4017
     No. informative markers: 4017 (100%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Done with filtering.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/fitpoly.dat'
     Content type 'text/plain; charset=utf-8' length 3563386 bytes (3.4 MB)
     ==================================================
     downloaded 3.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 150
     No. markers: 145
     No. informative markers: 138 (95.2%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     This is an object of class 'mappoly.data'
     Ploidy level: 4
     No. individuals: 150
     No. markers: 138
     Missing data: 3.89%
    
     No. markers per chromosome: not available
     ----------
     No. of markers per dosage combination in both parents:
     P1 P2 freq
     0 1 18
     0 2 24
     1 0 18
     1 1 19
     1 2 10
     1 3 3
     2 0 13
     2 1 6
     2 2 15
     2 3 2
     3 1 1
     3 2 5
     3 3 2
     3 4 1
     4 2 1
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007
     Iter: 1 0.031 0.000 0.000 0.008
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 20
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.002 0.006 0.006 0.007 0.006 0.011 0.008 0.004 0.003 0.001 0.004 0.001 0.003 0.007 0.009 0.009 0.000
     Iter: 2 0.024 0.000 0.001 0.007 0.007 0.009 0.006 0.014 0.010 0.004 0.003 0.001 0.004 0.001 0.004 0.009 0.013 0.016 0.000
     Iter: 3 0.028 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.001 0.004 0.009 0.016 0.020 0.000
     Iter: 4 0.029 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.004 0.008 0.018 0.024 0.000
     Iter: 5 0.030 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.008 0.020 0.027 0.000
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.007 0.021 0.029 0.000
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.006 0.021 0.031 0.000
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.005 0.022 0.032 0.000
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.004 0.022 0.033 0.000
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.004 0.022 0.034 0.000
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.035 0.000
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.035 0.000
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.036 0.000
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.036 0.000
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.001 0.024 0.037 0.000
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.001 0.024 0.037 0.000
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.037 0.000
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.037 0.000
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.038 0.000
     Iter: 23 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.038 0.000
     INFO: Going singlemode. Using one CPU for calculation.
     2 submaps found ...
     adding block 2 of 2
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
    
     M_1
     ----------------------------------
     dosage P1: 1
     dosage P2: 2
     ----
     dosage distribution
     0 1 2 3 mis
     23 120 126 31 0
     ----
     expected polysomic segregation
     0 1 2 3 4 5 6
     0.1 0.4 0.4 0.1 0.0 0.0 0.0
     ----------------------------------
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.017 0.010
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.029 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010
     Iter: 1 0.030 0.000 0.000 0.007 0.007 0.009 0.006 0.017 0.010
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.006 0.006 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.014
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.012
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.010
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.010
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.009
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.009
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 23 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 24 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Updating map 1
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 127 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test-cahe_twopts.R:8:3): compute genotype counts correctly ───────────
     Error in `get_cache_two_pts_from_web(ploidy = 4)`: Cache file not found. Try to use get.from.web = FALSE
     Backtrace:
     ▆
     1. └─mappoly::get_cache_two_pts_from_web(ploidy = 4) at test-cahe_twopts.R:8:2
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 127 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.3.0
Check: package dependencies
Result: WARN
    Requires (indirectly) orphaned package: ‘gtools’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3.0
Check: installed package size
Result: NOTE
     installed size is 11.1Mb
     sub-directories of 1Mb or more:
     R 2.7Mb
     data 2.4Mb
     libs 4.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.3.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [107s/394s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > if(requireNamespace("testthat", quietly = TRUE)){
     + library(testthat)
     + library(mappoly)
     + test_check("mappoly")
     + }
     =====================================================
     MAPpoly Package [Version 0.3.02022-01-11 09:22:41 UTC]
     More information: https://github.com/mmollina/MAPpoly
     =====================================================
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     INFO: Going singlemode. Using one CPU.
     Stress: 0.30318
     Mean Nearest Neighbour Fit: 6.18314INFO: Using 2 CPUs for calculation.
     INFO: Done with 2701 pairs of markers
     INFO: Calculation took: 10.617 seconds
     INFO: Using 2 CPUs for calculation.
     INFO: Done with 2701 pairs of markers
     INFO: Calculation took: 12.838 seconds
     Going RcppParallel mode.
     ...
     Done with pairwise computation.
     ~~~~~~~
     Reorganizing results
     ...
     Caching the following dosage combination:
     P.k P.k+1 Q.k Q.k+1
     Conf.1 3 0 2 1
     Conf.2 3 3 2 2
     Conf.3 3 4 2 3
     Conf.4 4 0 3 1
     Conf.5 4 3 3 2
     Conf.6 4 4 3 3
     INFO: Going singlemode. Using one Core/CPU/PC for calculation.
     INFO: Done with 6 phase configurations
     INFO: Calculation took: 0.539 seconds
     This is an object of class 'cache.info'
     -----------------------------------------------------
     Ploidy level: 4
     No. marker combinations: 625
     -----------------------------------------------------
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
     Ploidy level:4
     Number of individuals:160
     ..................................................
     ..................................................
     ..................................................
     ..........
     Ploidy level:4
     Number of individuals:160
     ..................................................
     ..................................................
     ..................................................
     ..........
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     This is an object of class 'mappoly.map'
     Ploidy level: 4
     No. individuals: 160
     No. markers: 5
     No. linkage phases: 1
    
     ---------------------------------------------
     Linkage phase configuration: 1
     log-likelihood: -123.7037
     LOD: 0
    
     a b c d e f g h
     solcap_snp_c2_4408 o o o o o o o | 0.0
     solcap_snp_c2_21332 o o o | o o | | 0.7
     solcap_snp_c2_21314 o o o o o o o | 0.8
     solcap_snp_c2_4437 o o o | o o | | 0.9
     solcap_snp_c2_6674 | | | | | | | o 0.9
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     Number of markers: 5
     4 markers...
     • Trying sequence: 1 2 3 4 :
     1 phase(s): .
     5/5:(100%) 7: 1 ph (1/1) -- tail: 4 |||| |||•
     Markers in the initial sequence: 5
     Mapped markers : 5 (100%)
     Number of markers: 5
     4 markers...
     • Trying sequence: 1 2 3 4 :
     1 phase(s): .
     5/5:(100%) 7: 1 ph (1/1) -- tail: 4 |||| |||•
     Markers in the initial sequence: 5
     Mapped markers : 5 (100%)
     Ploidy level: 4
     Rec. Frac. Limit: 0.5
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.019 0.007 0.012 0.007
     Iter: 2 0.028 0.006 0.015 0.008
     Iter: 3 0.032 0.005 0.016 0.009
     Iter: 4 0.034 0.005 0.017 0.010
     Iter: 5 0.036 0.004 0.017 0.011
     Iter: 6 0.036 0.004 0.017 0.011
     Iter: 7 0.037 0.003 0.017 0.012
     Iter: 8 0.037 0.003 0.017 0.013
     Iter: 9 0.037 0.003 0.016 0.013
     Iter: 10 0.037 0.002 0.016 0.014
     Iter: 11 0.037 0.002 0.016 0.014
     Iter: 12 0.037 0.002 0.016 0.014
     Iter: 13 0.037 0.002 0.016 0.015
     Iter: 14 0.038 0.002 0.016 0.015
     Iter: 15 0.038 0.002 0.016 0.015
     Iter: 16 0.038 0.002 0.016 0.015
     Iter: 17 0.038 0.002 0.016 0.016
     Iter: 18 0.038 0.002 0.016 0.016
     Iter: 19 0.038 0.002 0.016 0.016
     Iter: 20 0.038 0.002 0.016 0.016
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.001 0.005
     Iter: 2 0.024 0.000 0.001 0.007
     Iter: 3 0.028 0.000 0.000 0.008
     Iter: 4 0.030 0.000 0.000 0.008
     Iter: 5 0.030 0.000 0.000 0.008
     Iter: 6 0.031 0.000 0.000 0.008
     Iter: 7 0.031 0.000 0.000 0.008
     Iter: 8 0.031 0.000 0.000 0.008
     "Marker Name","LG","Ref Chrom","Ref Position","Ref Allele","Alt Allele","Map Position","Dose in P1","Dose in P2","ph.P.a","ph.P.b","ph.P.c","ph.P.d","ph.Q.e","ph.Q.f","ph.Q.g","ph.Q.h"
     "solcap_snp_c2_51460",1,"1", 151147,NA,NA, 0.00,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_36608",1,"1", 251032,NA,NA, 3.20,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_36615",1,"1", 252977,NA,NA, 3.21,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_36658",1,"1", 269300,NA,NA, 3.22,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_10930",1,"1", 309242,NA,NA, 3.92,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_36629",1,"1", 433701,NA,NA, 4.62,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_10915",1,"1", 481195,NA,NA, 5.56,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c1_10918",1,"1", 496966,NA,NA, 6.18,1,2,0,1,0,0,0,1,1,0
     "solcap_snp_c2_36650",1,"1", 507322,NA,NA, 7.67,1,2,0,1,0,0,0,1,1,0
     "solcap_snp_c2_36643",1,"1", 508489,NA,NA, 8.71,2,2,0,0,1,1,1,0,0,1
     "solcap_snp_c2_36660",1,"1", 534726,NA,NA, 9.12,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_36664",1,"1", 535354,NA,NA, 9.40,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c2_36686",1,"1", 601257,NA,NA, 9.41,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_54803",1,"1", 811809,NA,NA, 9.92,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c2_54800",1,"1", 813297,NA,NA, 9.93,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c2_54797",1,"1", 817305,NA,NA, 10.46,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_56714",1,"1", 931273,NA,NA, 10.47,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_6865",1,"1", 1513756,NA,NA, 12.72,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_6683",1,"1", 1828357,NA,NA, 15.31,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c1_2417",1,"1", 1838764,NA,NA, 15.32,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_6713",1,"1", 2068205,NA,NA, 15.58,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21098",1,"1", 2589396,NA,NA, 17.78,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21100",1,"1", 2591241,NA,NA, 19.16,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21233",1,"1", 2956217,NA,NA, 21.10,2,1,0,1,0,1,0,1,0,0
     "solcap_snp_c1_6704",1,"1", 2957498,NA,NA, 21.20,1,2,0,0,1,0,0,1,1,0
     "solcap_snp_c2_21236",1,"1", 2958510,NA,NA, 22.07,3,2,0,1,1,1,0,1,1,0
     "solcap_snp_c1_6123",1,"1", 3296081,NA,NA, 25.79,2,2,1,0,1,0,0,1,1,0
     "solcap_snp_c1_6114",1,"1", 3693321,NA,NA, 25.97,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_6109",1,"1", 3716835,NA,NA, 26.67,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_51791",1,"1", 4309511,NA,NA, 31.96,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_49938",1,"1", 4597936,NA,NA, 31.97,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_56125",1,"1", 5291666,NA,NA, 34.56,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_45058",1,"1", 5347412,NA,NA, 35.15,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_45071",1,"1", 5386765,NA,NA, 36.19,3,1,1,1,0,1,1,0,0,0
     "solcap_snp_c2_45064",1,"1", 5502148,NA,NA, 36.69,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_13289",1,"1", 5504921,NA,NA, 36.70,2,3,1,0,0,1,0,1,1,1
     "solcap_snp_c1_13293",1,"1", 5505413,NA,NA, 36.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_27877",1,"1", 6071274,NA,NA, 38.46,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_27878",1,"1", 6071298,NA,NA, 38.47,1,1,0,0,0,1,1,0,0,0
     "solcap_snp_c2_27882",1,"1", 6071676,NA,NA, 38.73,3,1,0,1,1,1,1,0,0,0
     "solcap_snp_c2_27884",1,"1", 6071778,NA,NA, 38.74,3,1,0,1,1,1,1,0,0,0
     "solcap_snp_c2_27885",1,"1", 6071817,NA,NA, 39.13,0,3,0,0,0,0,0,1,1,1
     "solcap_snp_c2_27903",1,"1", 6295642,NA,NA, 40.12,2,3,0,1,0,1,0,1,1,1
     "solcap_snp_c2_27918",1,"1", 6587772,NA,NA, 40.56,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_48155",1,"1", 7165330,NA,NA, 41.98,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_48154",1,"1", 7165840,NA,NA, 42.33,2,3,0,1,0,1,0,1,1,1
     "solcap_snp_c2_50011",1,"1", 7446981,NA,NA, 42.34,2,3,1,0,1,0,0,1,1,1
     "solcap_snp_c1_16312",1,"1", 7641280,NA,NA, 43.72,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52709",1,"1", 8645609,NA,NA, 44.63,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52712",1,"1", 8645693,NA,NA, 44.64,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52705",1,"1", 8653609,NA,NA, 45.12,2,1,0,1,0,1,0,1,0,0
     "solcap_snp_c2_48549",1,"1",10570936,NA,NA, 52.54,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_48563",1,"1",10573573,NA,NA, 52.55,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_55639",1,"1",11235975,NA,NA, 52.56,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_56356",1,"1",11737675,NA,NA, 52.57,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_56359",1,"1",11742617,NA,NA, 52.81,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_57284",1,"1",11774518,NA,NA, 53.18,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_45637",1,"1",12022263,NA,NA, 53.55,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_55008",1,"1",12994177,NA,NA, 57.69,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_53521",1,"1",13266849,NA,NA, 57.70,2,2,0,1,0,1,0,0,1,1
     "solcap_snp_c2_43984",1,"1",13369857,NA,NA, 57.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_12938",1,"1",13392343,NA,NA, 58.21,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_43970",1,"1",13545289,NA,NA, 59.61,1,1,0,1,0,0,0,0,1,0
     "solcap_snp_c2_43973",1,"1",13547044,NA,NA, 60.07,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c1_8908",1,"1",13656016,NA,NA, 60.91,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_54355",1,"1",13740719,NA,NA, 63.95,2,2,1,0,1,0,0,1,0,1
     "solcap_snp_c2_54353",1,"1",13747285,NA,NA, 66.18,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_49867",1,"1",16399117,NA,NA, 66.19,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_48568",1,"1",17370536,NA,NA, 66.20,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c1_8593",1,"1",17664021,NA,NA, 66.21,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_53759",1,"1",18753871,NA,NA, 66.22,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_56842",1,"1",18925684,NA,NA, 66.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c1_16421",1,"1",18926984,NA,NA, 66.59,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_14663",1,"1",19664067,NA,NA, 66.71,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_49326",1,"1",20549734,NA,NA, 68.28,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c1_5477",1,"1",23657080,NA,NA, 68.29,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_43643",1,"1",29180891,NA,NA, 69.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_22549",1,"1",29678234,NA,NA, 69.24,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_22546",1,"1",29679750,NA,NA, 69.25,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_7136",1,"1",30125081,NA,NA, 69.59,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_11066",1,"1",32091982,NA,NA, 69.93,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_9378",1,"1",34098178,NA,NA, 70.23,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_27683",1,"1",37067385,NA,NA, 70.27,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_27677",1,"1",37071329,NA,NA, 70.59,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42829",1,"1",38478335,NA,NA, 71.26,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_15714",1,"1",39325633,NA,NA, 71.51,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_45395",1,"1",39529256,NA,NA, 71.81,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_49732",1,"1",41859322,NA,NA, 73.88,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_14648",1,"1",41947283,NA,NA, 73.89,4,1,1,1,1,1,0,1,0,0
     "solcap_snp_c1_14654",1,"1",41979022,NA,NA, 73.90,4,1,1,1,1,1,0,1,0,0
     "solcap_snp_c2_32111",1,"1",42197632,NA,NA, 73.91,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_32112",1,"1",42197668,NA,NA, 74.94,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_50028",1,"1",43180567,NA,NA, 76.56,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_50023",1,"1",43196126,NA,NA, 77.18,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_49042",1,"1",43330828,NA,NA, 78.19,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_16169",1,"1",44194024,NA,NA, 81.89,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_14248",1,"1",44696488,NA,NA, 81.90,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c1_14249",1,"1",44696500,NA,NA, 82.40,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_14259",1,"1",44700858,NA,NA, 82.41,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_14261",1,"1",44702300,NA,NA, 82.42,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c2_53708",1,"1",44890351,NA,NA, 83.08,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_40131",1,"1",45751390,NA,NA, 83.09,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_54811",1,"1",46271054,NA,NA, 83.10,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_15855",1,"1",46323471,NA,NA, 83.11,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_35220",1,"1",47299682,NA,NA, 83.12,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_35218",1,"1",47300005,NA,NA, 83.13,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_35601",1,"1",50791085,NA,NA, 85.14,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_694",1,"1",51290105,NA,NA, 85.74,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_686",1,"1",51324458,NA,NA, 85.80,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c2_57898",1,"1",51736618,NA,NA, 85.81,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_880",1,"1",54480981,NA,NA, 86.14,4,3,1,1,1,1,1,1,1,0
     "solcap_snp_c2_55113",1,"1",54580381,NA,NA, 86.15,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_2874",1,"1",55163851,NA,NA, 86.16,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_55621",1,"1",55427211,NA,NA, 86.17,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_55618",1,"1",55427602,NA,NA, 86.35,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c1_14633",1,"1",57931788,NA,NA, 91.38,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_2721",1,"1",58197548,NA,NA, 91.39,1,1,0,0,0,1,1,0,0,0
     "solcap_snp_c2_2653",1,"1",58737622,NA,NA, 92.93,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_2591",1,"1",58985511,NA,NA, 93.92,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_13430",1,"1",59363361,NA,NA, 95.09,1,3,0,1,0,0,1,0,1,1
     "solcap_snp_c2_46523",1,"1",59973949,NA,NA, 95.82,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_46521",1,"1",59974282,NA,NA, 95.83,2,3,1,0,1,0,1,1,1,0
     "solcap_snp_c2_46520",1,"1",59974316,NA,NA, 95.84,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_53347",1,"1",60026944,NA,NA, 96.47,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_35511",1,"1",60433785,NA,NA, 96.48,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35518",1,"1",60512480,NA,NA, 96.49,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35520",1,"1",60513199,NA,NA, 96.50,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35536",1,"1",60515867,NA,NA, 97.95,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_35537",1,"1",60516874,NA,NA, 97.96,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_43926",1,"1",60887837,NA,NA, 98.27,2,2,0,1,0,1,1,0,0,1
     "solcap_snp_c2_56267",1,"1",60919490,NA,NA, 99.07,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c2_20798",1,"1",60951573,NA,NA, 99.08,2,2,1,1,0,0,0,1,1,0
     "solcap_snp_c2_20799",1,"1",60951606,NA,NA, 99.29,2,2,0,0,1,1,1,0,0,1
     "solcap_snp_c2_20803",1,"1",60987155,NA,NA, 99.52,1,2,0,0,0,1,1,0,0,1
     "solcap_snp_c2_20890",1,"1",61310805,NA,NA,101.03,3,3,1,1,1,0,1,1,1,0
     "solcap_snp_c2_50903",1,"1",61774492,NA,NA,101.77,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_38428",1,"1",62058660,NA,NA,102.74,1,1,0,0,0,1,0,0,0,1
     "solcap_snp_c2_38406",1,"1",62144916,NA,NA,103.16,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_38404",1,"1",62148178,NA,NA,103.17,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c2_38448",1,"1",62289476,NA,NA,104.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_12106",1,"1",62802674,NA,NA,106.27,1,3,0,0,0,1,1,0,1,1
     "solcap_snp_c2_41337",1,"1",62930793,NA,NA,106.84,1,3,0,0,0,1,1,0,1,1
     "solcap_snp_c2_32359",1,"1",63208419,NA,NA,108.73,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_9679",1,"1",63338027,NA,NA,110.16,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_12057",1,"1",63596472,NA,NA,111.12,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_13686",1,"1",64120988,NA,NA,113.01,2,3,0,0,1,1,1,0,1,1
     "solcap_snp_c2_46195",1,"1",64259858,NA,NA,113.66,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_13751",1,"1",64614114,NA,NA,113.95,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_4415",1,"1",65036984,NA,NA,116.70,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c2_13675",1,"1",65036993,NA,NA,116.94,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_13676",1,"1",65054301,NA,NA,116.95,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_13671",1,"1",65062849,NA,NA,116.96,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c2_13653",1,"1",65270150,NA,NA,117.37,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c2_13650",1,"1",65277543,NA,NA,117.38,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_4744",1,"1",65472678,NA,NA,118.20,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_14467",1,"1",65694581,NA,NA,118.81,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14470",1,"1",65697018,NA,NA,118.83,2,4,1,0,0,1,1,1,1,1
     "solcap_snp_c1_4706",1,"1",65780052,NA,NA,119.64,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14487",1,"1",65780861,NA,NA,119.65,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14489",1,"1",65781907,NA,NA,119.66,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14491",1,"1",65782311,NA,NA,119.69,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_14492",1,"1",65782372,NA,NA,119.70,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_14493",1,"1",65782860,NA,NA,120.27,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_4745",1,"1",66094082,NA,NA,123.09,2,2,1,0,0,1,1,1,0,0
     "solcap_snp_c1_4748",1,"1",66259325,NA,NA,123.10,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14589",1,"1",66283156,NA,NA,123.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_37564",1,"1",66307265,NA,NA,123.24,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_14595",1,"1",66307870,NA,NA,123.66,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_37566",1,"1",66307870,NA,NA,123.67,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_4752",1,"1",66336597,NA,NA,124.20,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14608",1,"1",66349497,NA,NA,124.47,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_4757",1,"1",66354237,NA,NA,124.83,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_4763",1,"1",66376115,NA,NA,124.84,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c1_5150",1,"1",66675718,NA,NA,127.51,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_58099",1,"1",66845540,NA,NA,127.69,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_5145",1,"1",66904071,NA,NA,127.70,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_20569",1,"1",67013419,NA,NA,132.36,3,1,1,1,1,0,0,0,1,0
     "solcap_snp_c2_20501",1,"1",67211402,NA,NA,136.36,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c2_20502",1,"1",67221811,NA,NA,137.02,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c2_20505",1,"1",67223365,NA,NA,138.09,3,2,0,1,1,1,0,0,1,1
     "solcap_snp_c2_20506",1,"1",67223618,NA,NA,139.27,3,3,0,1,1,1,1,0,1,1
     "solcap_snp_c2_20508",1,"1",67224636,NA,NA,139.92,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_20513",1,"1",67277917,NA,NA,140.32,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_20521",1,"1",67293276,NA,NA,140.85,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_20522",1,"1",67294203,NA,NA,141.34,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_6501",1,"1",67459562,NA,NA,142.30,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_6518",1,"1",67605601,NA,NA,142.31,2,2,0,1,0,1,0,0,1,1
     "solcap_snp_c2_13766",1,"1",67896690,NA,NA,142.32,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_52492",1,"1",67969508,NA,NA,143.43,3,2,1,1,0,1,0,0,1,1
     "solcap_snp_c2_52484",1,"1",68069976,NA,NA,144.07,1,2,0,0,1,0,1,1,0,0
     "solcap_snp_c2_49451",1,"1",68416146,NA,NA,145.42,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_14044",1,"1",68529607,NA,NA,146.51,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_51055",1,"1",68950490,NA,NA,147.79,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c1_11769",1,"1",69200071,NA,NA,148.59,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_39834",1,"1",69381232,NA,NA,149.22,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_17592",1,"1",69809943,NA,NA,150.28,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_17529",1,"1",69902111,NA,NA,150.29,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_17531",1,"1",70016341,NA,NA,151.13,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_17537",1,"1",70097616,NA,NA,151.14,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c1_15579",1,"1",70341165,NA,NA,151.68,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c1_15580",1,"1",70341195,NA,NA,151.91,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c2_53380",1,"1",70371798,NA,NA,152.63,3,2,0,1,1,1,0,0,1,1
     "solcap_snp_c2_53381",1,"1",70372029,NA,NA,153.40,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c2_17191",1,"1",70474751,NA,NA,153.41,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_5657",1,"1",70560319,NA,NA,154.13,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c1_5656",1,"1",70562884,NA,NA,154.14,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_5653",1,"1",70697401,NA,NA,154.15,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_3860",1,"1",71009488,NA,NA,155.37,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c1_3863",1,"1",71009686,NA,NA,156.05,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_12076",1,"1",71090664,NA,NA,156.55,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_3867",1,"1",71239298,NA,NA,157.43,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_3868",1,"1",71239559,NA,NA,157.65,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_3876",1,"1",71278255,NA,NA,158.09,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_12106",1,"1",71298195,NA,NA,158.31,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_3894",1,"1",71421320,NA,NA,158.74,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_12126",1,"1",71450592,NA,NA,159.39,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_12216",1,"1",72051429,NA,NA,160.94,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_12217",1,"1",72051456,NA,NA,160.97,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_3848",1,"1",72108418,NA,NA,160.98,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_3851",1,"1",72112064,NA,NA,160.99,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_9565",1,"1",72320561,NA,NA,162.31,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_9566",1,"1",72320582,NA,NA,162.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_9573",1,"1",72504567,NA,NA,162.33,2,2,0,1,1,0,0,0,1,1
     "solcap_snp_c2_31820",1,"1",72528671,NA,NA,163.44,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_31821",1,"1",72531263,NA,NA,163.45,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_9583",1,"1",72540600,NA,NA,163.66,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c1_9587",1,"1",72541075,NA,NA,163.67,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_14274",1,"1",74061621,NA,NA,166.55,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c1_4617",1,"1",74355434,NA,NA,168.09,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_14365",1,"1",74688262,NA,NA,168.11,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14366",1,"1",74688318,NA,NA,168.54,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c1_14931",1,"1",75007319,NA,NA,168.55,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_16369",1,"1",75164058,NA,NA,169.98,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c1_5267",1,"1",75333553,NA,NA,170.01,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_5281",1,"1",75441912,NA,NA,170.02,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_5286",1,"1",75477570,NA,NA,170.90,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_16424",1,"1",75478258,NA,NA,171.43,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_16425",1,"1",75485276,NA,NA,171.73,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_16466",1,"1",75749019,NA,NA,171.74,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c1_5346",1,"1",75789912,NA,NA,172.18,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_16435",1,"1",76304406,NA,NA,172.61,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c2_2509",1,"1",76406745,NA,NA,172.62,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_2291",1,"1",76480645,NA,NA,173.91,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_641",1,"1",76511147,NA,NA,173.93,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_2420",1,"1",76953005,NA,NA,175.04,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_2423",1,"1",76958677,NA,NA,175.41,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_2424",1,"1",76960116,NA,NA,176.33,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_2427",1,"1",76960344,NA,NA,177.73,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c2_2450",1,"1",77056087,NA,NA,177.96,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2463",1,"1",77190863,NA,NA,178.95,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2464",1,"1",77190891,NA,NA,178.96,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2466",1,"1",77191250,NA,NA,179.19,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2505",1,"1",77350779,NA,NA,179.67,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_2508",1,"1",77353050,NA,NA,180.18,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_758",1,"1",77526728,NA,NA,180.52,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_2201",1,"1",77738922,NA,NA,180.88,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_601",1,"1",78168030,NA,NA,182.58,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_607",1,"1",78176086,NA,NA,182.59,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2299",1,"1",78192398,NA,NA,183.05,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_2354",1,"1",78430745,NA,NA,183.73,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_50486",1,"1",78756800,NA,NA,184.18,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50484",1,"1",78757017,NA,NA,184.41,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50483",1,"1",78757327,NA,NA,184.64,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50502",1,"1",78809381,NA,NA,184.88,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c1_15872",1,"1",78928170,NA,NA,185.35,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_7007",1,"1",79083850,NA,NA,189.67,2,2,1,0,1,0,0,1,1,0
     "solcap_snp_c1_2484",1,"1",79157311,NA,NA,193.43,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_7094",1,"1",79187093,NA,NA,193.46,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_7193",1,"1",79391798,NA,NA,193.94,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_7208",1,"1",79456001,NA,NA,197.09,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c1_2519",1,"1",79487369,NA,NA,197.10,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c1_2520",1,"1",79487485,NA,NA,197.40,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_7241",1,"1",79678600,NA,NA,197.59,3,3,1,1,0,1,1,0,1,1
     "solcap_snp_c2_7242",1,"1",79679061,NA,NA,197.60,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_7245",1,"1",79679433,NA,NA,197.96,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_7246",1,"1",79679919,NA,NA,198.32,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c1_2531",1,"1",79711129,NA,NA,198.33,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_7328",1,"1",79955769,NA,NA,199.81,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_6990",1,"1",80077222,NA,NA,200.92,2,3,1,0,0,1,0,1,1,1
     "solcap_snp_c1_2458",1,"1",80121157,NA,NA,200.93,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_7053",1,"1",80228512,NA,NA,202.00,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7055",1,"1",80229751,NA,NA,203.13,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7056",1,"1",80229823,NA,NA,203.59,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_7061",1,"1",80230621,NA,NA,204.94,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7062",1,"1",80230636,NA,NA,204.95,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c1_1853",1,"1",80429124,NA,NA,205.22,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_5091",1,"1",80558977,NA,NA,206.13,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_5077",1,"1",80591992,NA,NA,207.68,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_5078",1,"1",80592039,NA,NA,208.01,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_5039",1,"1",80669402,NA,NA,209.26,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_9727",1,"1",80833354,NA,NA,209.27,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_9726",1,"1",80833555,NA,NA,209.28,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_9722",1,"1",80835882,NA,NA,209.91,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_9988",1,"1",81013079,NA,NA,212.06,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_9925",1,"1",81410356,NA,NA,212.44,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_9892",1,"1",81567397,NA,NA,215.81,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_9864",1,"1",81615881,NA,NA,215.82,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c1_3275",1,"1",81750527,NA,NA,217.23,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_3255",1,"1",81795335,NA,NA,217.88,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c1_3241",1,"1",81924813,NA,NA,219.27,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_3234",1,"1",81927346,NA,NA,219.38,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_47360",1,"1",82220028,NA,NA,221.34,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4896",1,"1",82628961,NA,NA,222.55,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_4799",1,"1",82927941,NA,NA,222.86,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_1638",1,"1",82935846,NA,NA,222.87,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_1653",1,"1",83012188,NA,NA,225.35,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c1_1683",1,"1",83059366,NA,NA,226.88,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4844",1,"1",83060466,NA,NA,227.75,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c2_4845",1,"1",83060720,NA,NA,229.69,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4860",1,"1",83130390,NA,NA,229.71,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_4864",1,"1",83138355,NA,NA,230.11,2,4,0,1,0,1,1,1,1,1
     "solcap_snp_c2_4875",1,"1",83177618,NA,NA,231.71,3,1,1,1,1,0,1,0,0,0
     "solcap_snp_c2_4884",1,"1",83186994,NA,NA,232.67,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_4885",1,"1",83187000,NA,NA,232.90,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_4898",1,"1",83283573,NA,NA,232.91,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4904",1,"1",83416355,NA,NA,234.34,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4907",1,"1",83418574,NA,NA,236.34,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4910",1,"1",83419340,NA,NA,237.80,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_1737",1,"1",83602469,NA,NA,238.45,2,3,0,1,0,1,1,0,1,1
     "solcap_snp_c1_1739",1,"1",83608625,NA,NA,240.68,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_4614",1,"1",83843457,NA,NA,240.69,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_4664",1,"1",84062694,NA,NA,242.21,1,3,0,0,0,1,0,1,1,1
     "solcap_snp_c2_4708",1,"1",84214693,NA,NA,244.20,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_4713",1,"1",84217673,NA,NA,244.21,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_36495",1,"1",84457206,NA,NA,244.46,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_34546",1,"1",84727952,NA,NA,246.10,1,3,0,0,0,1,0,1,1,1
     "solcap_snp_c1_10354",1,"1",84979069,NA,NA,251.03,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_22",1,"1",85243830,NA,NA,251.60,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_24",1,"1",85323495,NA,NA,255.50,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_13385",1,"1",85715515,NA,NA,256.96,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_46448",1,"1",85760106,NA,NA,256.97,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_53075",1,"1",85902499,NA,NA,257.70,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_42943",1,"1",85953353,NA,NA,258.40,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_49917",1,"1",86090288,NA,NA,258.41,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_49911",1,"1",86095463,NA,NA,258.42,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_49910",1,"1",86095890,NA,NA,258.43,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14839",1,"1",86328984,NA,NA,260.84,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14707",1,"1",86355213,NA,NA,260.85,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14708",1,"1",86356234,NA,NA,262.85,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14709",1,"1",86356378,NA,NA,262.86,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_4796",1,"1",86388041,NA,NA,263.11,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14730",1,"1",86441357,NA,NA,266.54,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14733",1,"1",86527670,NA,NA,267.31,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_4799",1,"1",86663770,NA,NA,269.34,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14761",1,"1",86750111,NA,NA,270.26,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14762",1,"1",86750599,NA,NA,270.54,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14763",1,"1",86847560,NA,NA,270.82,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14764",1,"1",86847664,NA,NA,271.20,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14772",1,"1",86877778,NA,NA,271.58,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14779",1,"1",86887803,NA,NA,274.05,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_4803",1,"1",86942483,NA,NA,276.39,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14827",1,"1",87096629,NA,NA,277.06,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14840",1,"1",87161581,NA,NA,278.23,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_14841",1,"1",87161695,NA,NA,279.54,3,3,1,0,1,1,0,1,1,1
     "solcap_snp_c2_14848",1,"1",87196823,NA,NA,280.06,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c2_37836",1,"1",87392825,NA,NA,282.11,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_37820",1,"1",87463711,NA,NA,282.12,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_11288",1,"1",87558384,NA,NA,282.13,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_11308",1,"1",87663528,NA,NA,287.31,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_37850",1,"1",87731594,NA,NA,287.32,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_37816",1,"1",87746020,NA,NA,288.43,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_9428",1,"1",87944667,NA,NA,298.18,3,1,1,1,1,0,0,1,0,0
     "solcap_snp_c1_9430",1,"1",87965033,NA,NA,302.34,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_22105",1,"1",88057376,NA,NA,306.51,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_9413",1,"1",88294049,NA,NA,309.12,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_9406",1,"1",88347489,NA,NA,309.94,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_30963",1,"1",88362769,NA,NA,313.20,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_30961",1,"1",88389459,NA,NA,313.21,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_9397",1,"1",88409394,NA,NA,314.43,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_9392",1,"1",88434818,NA,NA,314.44,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_30958",1,"1",88451845,NA,NA,316.36,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_30956",1,"1",88452032,NA,NA,316.37,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_30955",1,"1",88452236,NA,NA,316.38,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_1504",2,"2", 4479289,NA,NA, 0.00,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_4344",2,"2", 4884993,NA,NA, 0.49,0,3,0,0,0,0,1,1,1,0
     "solcap_snp_c2_4354",2,"2", 5159401,NA,NA, 0.65,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_48725",2,"2", 5510874,NA,NA, 0.65,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_3750",2,"2", 6090174,NA,NA, 1.63,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_11591",2,"2", 6647886,NA,NA, 2.61,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_3747",2,"2", 7050814,NA,NA, 2.82,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_4515",2,"2", 8246308,NA,NA, 3.03,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_14690",2,"2", 8398966,NA,NA, 3.03,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_14648",2,"2", 8799627,NA,NA, 3.47,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c1_4792",2,"2", 8802985,NA,NA, 4.42,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_14645",2,"2", 9338437,NA,NA, 5.05,2,0,0,0,1,1,0,0,0,0
     "solcap_snp_c2_730",2,"2",12188889,NA,NA, 5.70,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_41887",2,"2",15292858,NA,NA, 6.44,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_47096",2,"2",16846846,NA,NA, 8.89,0,3,0,0,0,0,0,1,1,1
     "solcap_snp_c2_17387",2,"2",20193366,NA,NA, 9.64,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_17427",2,"2",20681191,NA,NA, 11.77,3,0,1,1,1,0,0,0,0,0
     "solcap_snp_c2_17428",2,"2",20681220,NA,NA, 12.45,1,3,0,0,0,1,1,1,0,1
     "solcap_snp_c1_5739",2,"2",20681710,NA,NA, 13.09,3,0,1,1,1,0,0,0,0,0
     "solcap_snp_c1_11344",2,"2",21725517,NA,NA, 18.09,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_38022",2,"2",22006999,NA,NA, 18.88,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_32421",2,"2",22621554,NA,NA, 21.89,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_9719",2,"2",22749359,NA,NA, 22.13,0,3,0,0,0,0,1,1,0,1
     "solcap_snp_c2_39705",2,"2",23426100,NA,NA, 25.47,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_39677",2,"2",23550342,NA,NA, 26.12,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_37256",2,"2",23737215,NA,NA, 27.42,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_11122",2,"2",23799802,NA,NA, 27.43,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_33996",2,"2",24149138,NA,NA, 30.38,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_53818",2,"2",24744880,NA,NA, 30.38,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_15402",2,"2",24899862,NA,NA, 31.49,4,1,1,1,1,1,0,0,1,0
     "solcap_snp_c2_52630",2,"2",24910552,NA,NA, 34.48,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_21752",2,"2",25050163,NA,NA, 36.52,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_6841",2,"2",25051854,NA,NA, 37.05,4,1,1,1,1,1,0,0,1,0
     "solcap_snp_c2_21746",2,"2",25072703,NA,NA, 37.40,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_21722",2,"2",25322160,NA,NA, 38.34,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_21717",2,"2",25423184,NA,NA, 40.23,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c1_9369",2,"2",26798985,NA,NA, 42.18,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_45392",2,"2",27065211,NA,NA, 42.79,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_45307",2,"2",27086772,NA,NA, 43.77,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_45310",2,"2",27088140,NA,NA, 43.93,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_45311",2,"2",27088340,NA,NA, 44.25,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_13459",2,"2",27143875,NA,NA, 45.22,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13465",2,"2",27190187,NA,NA, 45.92,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_12339",2,"2",27411139,NA,NA, 45.94,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_12345",2,"2",27412322,NA,NA, 46.50,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_12305",2,"2",27458950,NA,NA, 46.91,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_12310",2,"2",27553365,NA,NA, 47.61,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_41980",2,"2",27557427,NA,NA, 48.15,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_12330",2,"2",27618598,NA,NA, 48.15,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42059",2,"2",27676633,NA,NA, 48.15,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_38940",2,"2",27856761,NA,NA, 48.63,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_38938",2,"2",27860023,NA,NA, 49.54,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_38936",2,"2",27860101,NA,NA, 49.88,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_11556",2,"2",28039994,NA,NA, 50.06,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_38952",2,"2",28230312,NA,NA, 52.01,4,1,1,1,1,1,0,0,0,1
     "solcap_snp_c2_19692",2,"2",28745987,NA,NA, 54.82,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_5091",2,"2",28830938,NA,NA, 55.63,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_5088",2,"2",28832209,NA,NA, 55.63,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_15749",2,"2",28938673,NA,NA, 56.86,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_48238",2,"2",29093635,NA,NA, 56.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_48237",2,"2",29093750,NA,NA, 56.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_14280",2,"2",29136032,NA,NA, 56.86,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_48195",2,"2",29136966,NA,NA, 58.21,3,1,1,0,1,1,1,0,0,0
     "solcap_snp_c1_14293",2,"2",29163304,NA,NA, 59.03,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_39155",2,"2",29312895,NA,NA, 59.03,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_39135",2,"2",29416066,NA,NA, 61.45,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_51113",2,"2",29665174,NA,NA, 61.69,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13912",2,"2",29883519,NA,NA, 63.21,1,2,0,1,0,0,0,1,0,1
     "solcap_snp_c2_46903",2,"2",29922714,NA,NA, 63.51,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_46904",2,"2",29922763,NA,NA, 63.51,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13929",2,"2",29928927,NA,NA, 63.80,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_46909",2,"2",29929969,NA,NA, 64.06,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_13910",2,"2",29990872,NA,NA, 64.32,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_13911",2,"2",30022458,NA,NA, 64.32,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_46885",2,"2",30044742,NA,NA, 64.33,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_46887",2,"2",30044882,NA,NA, 64.33,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_46898",2,"2",30147247,NA,NA, 64.62,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_7469",2,"2",30364207,NA,NA, 65.87,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_7412",2,"2",30401330,NA,NA, 66.50,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_7430",2,"2",30480570,NA,NA, 67.07,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_23170",2,"2",30785563,NA,NA, 68.54,1,3,0,1,0,0,1,0,1,1
     "solcap_snp_c2_23188",2,"2",31021446,NA,NA, 69.23,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_23192",2,"2",31060240,NA,NA, 70.07,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_54732",2,"2",31205330,NA,NA, 70.53,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_41534",2,"2",31571193,NA,NA, 71.69,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_13236",2,"2",31663185,NA,NA, 71.70,3,1,1,0,1,1,0,1,0,0
     "solcap_snp_c1_13233",2,"2",31714504,NA,NA, 71.70,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_39191",2,"2",32084708,NA,NA, 72.91,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c1_11581",2,"2",32220207,NA,NA, 74.63,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44771",2,"2",32647466,NA,NA, 75.14,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_44774",2,"2",32668501,NA,NA, 75.61,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44776",2,"2",32669850,NA,NA, 75.61,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44778",2,"2",32671297,NA,NA, 75.82,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44768",2,"2",32806437,NA,NA, 76.46,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_44769",2,"2",32820718,NA,NA, 76.70,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_44770",2,"2",32822882,NA,NA, 76.70,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_13051",2,"2",33076397,NA,NA, 76.70,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c1_4192",2,"2",33204619,NA,NA, 78.22,2,1,0,0,1,1,0,1,0,0
     "solcap_snp_c2_51998",2,"2",33270668,NA,NA, 78.76,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_51985",2,"2",33352028,NA,NA, 80.22,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_51990",2,"2",33357450,NA,NA, 80.23,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_48784",2,"2",33668370,NA,NA, 82.72,3,3,1,1,1,0,0,1,1,1
     "solcap_snp_c2_47037",2,"2",33978883,NA,NA, 85.33,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c1_12264",2,"2",34171806,NA,NA, 86.01,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_33141",2,"2",34594739,NA,NA, 88.89,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_33108",2,"2",34739225,NA,NA, 88.90,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_40155",2,"2",35112346,NA,NA, 90.03,2,3,0,0,1,1,1,1,1,0
     "solcap_snp_c2_50570",2,"2",35399177,NA,NA, 91.75,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_50394",2,"2",35549597,NA,NA, 92.94,2,1,1,1,0,0,0,0,0,1
     "solcap_snp_c2_50391",2,"2",35579108,NA,NA, 93.63,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_50412",2,"2",35600542,NA,NA, 93.63,4,3,1,1,1,1,1,1,1,0
     "solcap_snp_c2_50405",2,"2",35657756,NA,NA, 94.17,1,3,0,0,1,0,1,1,1,0
     "solcap_snp_c2_27433",2,"2",35990927,NA,NA, 94.67,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_27437",2,"2",36019472,NA,NA, 94.67,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_17973",2,"2",36229730,NA,NA, 95.07,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_17954",2,"2",36329410,NA,NA, 96.17,2,2,1,0,0,1,1,0,1,0
     "solcap_snp_c2_17938",2,"2",36364347,NA,NA, 96.74,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17937",2,"2",36364435,NA,NA, 96.99,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17935",2,"2",36364609,NA,NA, 97.09,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17932",2,"2",36364767,NA,NA, 97.18,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17930",2,"2",36364901,NA,NA, 97.18,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17926",2,"2",36365501,NA,NA, 97.38,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17925",2,"2",36365552,NA,NA, 97.79,2,2,0,1,1,0,0,1,0,1
     "solcap_snp_c2_17922",2,"2",36374598,NA,NA, 98.62,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17921",2,"2",36375406,NA,NA, 98.62,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17914",2,"2",36422560,NA,NA,100.07,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_17901",2,"2",36454929,NA,NA,101.33,2,1,1,0,0,1,1,0,0,0
     "solcap_snp_c2_17900",2,"2",36455067,NA,NA,101.95,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17899",2,"2",36455154,NA,NA,101.96,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17897",2,"2",36455571,NA,NA,101.96,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_17896",2,"2",36455607,NA,NA,101.96,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17895",2,"2",36455817,NA,NA,103.63,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_17816",2,"2",36728687,NA,NA,103.78,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_17809",2,"2",36799097,NA,NA,103.79,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_5846",2,"2",36959231,NA,NA,104.26,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_5845",2,"2",36959234,NA,NA,105.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_49495",2,"2",37017828,NA,NA,105.32,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c2_42169",2,"2",37438591,NA,NA,105.32,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_42172",2,"2",37439183,NA,NA,105.33,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c1_16170",2,"2",37474563,NA,NA,105.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_55632",2,"2",37474656,NA,NA,105.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_16171",2,"2",37475069,NA,NA,105.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_12373",2,"2",37530401,NA,NA,105.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_12382",2,"2",37654438,NA,NA,105.83,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_42241",2,"2",37676252,NA,NA,106.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35211",2,"2",37831945,NA,NA,106.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_10494",2,"2",37845965,NA,NA,106.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_10492",2,"2",37890758,NA,NA,106.83,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_10491",2,"2",37903554,NA,NA,107.24,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_35165",2,"2",37982943,NA,NA,108.38,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35139",2,"2",38046886,NA,NA,108.38,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_35113",2,"2",38121156,NA,NA,108.80,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_15466",2,"2",38386450,NA,NA,109.46,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53037",2,"2",38688112,NA,NA,109.46,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53036",2,"2",38688195,NA,NA,109.47,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53034",2,"2",38688354,NA,NA,109.47,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53033",2,"2",38688468,NA,NA,109.88,2,1,1,0,0,1,0,1,0,0
     "solcap_snp_c1_11955",2,"2",38837510,NA,NA,112.32,2,1,1,1,0,0,0,1,0,0
     "solcap_snp_c2_40635",2,"2",39073404,NA,NA,113.50,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_40638",2,"2",39073700,NA,NA,115.75,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42132",2,"2",39144989,NA,NA,115.75,1,3,0,0,1,0,1,0,1,1
     "solcap_snp_c2_42133",2,"2",39144999,NA,NA,115.75,1,3,0,0,1,0,1,0,1,1
     "solcap_snp_c2_42126",2,"2",39369111,NA,NA,115.80,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_42127",2,"2",39369213,NA,NA,115.80,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c1_8113",2,"2",39934151,NA,NA,120.10,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_8118",2,"2",39940655,NA,NA,120.12,2,3,0,0,1,1,1,0,1,1
     "solcap_snp_c1_8125",2,"2",39970010,NA,NA,120.19,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_25892",2,"2",40044441,NA,NA,122.61,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_25896",2,"2",40132579,NA,NA,122.66,3,3,1,0,1,1,1,0,1,1
     "solcap_snp_c2_25897",2,"2",40132705,NA,NA,122.66,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_25179",2,"2",40294633,NA,NA,123.40,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_7964",2,"2",40294982,NA,NA,126.16,3,3,1,1,1,0,1,1,0,1
     "solcap_snp_c2_7555",2,"2",41356969,NA,NA,128.16,0,2,0,0,0,0,0,1,1,0
     "solcap_snp_c2_7558",2,"2",41357718,NA,NA,128.59,0,2,0,0,0,0,0,1,1,0
     "solcap_snp_c2_7559",2,"2",41357748,NA,NA,128.59,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_7565",2,"2",41368149,NA,NA,129.00,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c1_2632",2,"2",41745246,NA,NA,130.15,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_2640",2,"2",41814961,NA,NA,130.65,2,3,0,0,1,1,1,1,1,0
     "solcap_snp_c1_2641",2,"2",41814973,NA,NA,131.72,2,1,0,0,1,1,1,0,0,0
     "solcap_snp_c1_2656",2,"2",41911152,NA,NA,133.37,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c1_2574",2,"2",42014614,NA,NA,133.68,2,3,1,1,0,0,0,1,1,1
     "solcap_snp_c2_7401",2,"2",42083055,NA,NA,136.14,3,3,0,1,1,1,1,0,1,1
     "solcap_snp_c2_7422",2,"2",42178610,NA,NA,137.92,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c1_2587",2,"2",42179852,NA,NA,138.59,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_7426",2,"2",42180225,NA,NA,139.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_57421",2,"2",42320846,NA,NA,141.09,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_16540",2,"2",42320852,NA,NA,141.19,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_15746",2,"2",42346419,NA,NA,142.45,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_22939",2,"2",42474531,NA,NA,144.58,2,1,1,1,0,0,0,0,0,1
     "solcap_snp_c1_7346",2,"2",42597250,NA,NA,146.12,2,2,1,1,0,0,1,0,0,1
     "solcap_snp_c2_22853",2,"2",42733575,NA,NA,146.95,3,2,0,1,1,1,0,1,1,0
     "solcap_snp_c1_7325",2,"2",42764357,NA,NA,147.64,1,1,1,0,0,0,0,0,0,1
     "solcap_snp_c2_27216",2,"2",43804789,NA,NA,152.13,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_27372",2,"2",44159308,NA,NA,155.23,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_27270",2,"2",44458161,NA,NA,155.71,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_27269",2,"2",44458317,NA,NA,155.71,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_27271",2,"2",44458644,NA,NA,158.41,2,3,0,0,1,1,1,1,0,1
     "solcap_snp_c1_8490",2,"2",44698531,NA,NA,160.85,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_43350",2,"2",44773146,NA,NA,162.25,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_43348",2,"2",44773305,NA,NA,163.47,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_12771",2,"2",44810386,NA,NA,164.70,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_43408",2,"2",44944594,NA,NA,164.70,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_12509",2,"2",45147157,NA,NA,165.43,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_42570",2,"2",45147640,NA,NA,165.43,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_14981",2,"2",45458650,NA,NA,168.41,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c1_4826",2,"2",45458875,NA,NA,168.42,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_4847",2,"2",45616677,NA,NA,168.43,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_15018",2,"2",45618297,NA,NA,170.53,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c1_4849",2,"2",45618958,NA,NA,170.88,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_15041",2,"2",45652545,NA,NA,172.61,2,3,0,0,1,1,1,1,0,1
     "solcap_snp_c2_15042",2,"2",45652553,NA,NA,175.68,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_15046",2,"2",45652811,NA,NA,175.68,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_15047",2,"2",45652877,NA,NA,176.03,1,1,0,1,0,0,0,1,0,0
     "solcap_snp_c2_15048",2,"2",45652958,NA,NA,176.28,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_15065",2,"2",45694316,NA,NA,176.45,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c1_4860",2,"2",45695631,NA,NA,176.60,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_15066",2,"2",45695637,NA,NA,176.76,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_4873",2,"2",45744372,NA,NA,176.88,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_4881",2,"2",45756458,NA,NA,176.88,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_7873",2,"2",46195290,NA,NA,177.44,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_7872",2,"2",46195303,NA,NA,178.19,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_7867",2,"2",46196437,NA,NA,179.89,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c1_7848",2,"2",46291502,NA,NA,179.89,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c1_7834",2,"2",46384191,NA,NA,181.66,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_24869",2,"2",46387342,NA,NA,182.20,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_47211",2,"2",46940997,NA,NA,182.20,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_47197",2,"2",47137310,NA,NA,184.36,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_47199",2,"2",47137738,NA,NA,184.36,3,3,1,0,1,1,1,0,1,1
     "solcap_snp_c2_47200",2,"2",47137863,NA,NA,187.30,2,0,0,0,1,1,0,0,0,0
     "solcap_snp_c2_47201",2,"2",47141179,NA,NA,188.15,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_10607",2,"2",47182635,NA,NA,189.23,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_10593",2,"2",47302272,NA,NA,193.87,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_35686",2,"2",47323948,NA,NA,193.87,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35687",2,"2",47324096,NA,NA,193.87,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35690",2,"2",47324235,NA,NA,193.87,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_35691",2,"2",47324287,NA,NA,194.70,0,3,0,0,0,0,1,1,0,1
     "solcap_snp_c2_35692",2,"2",47325069,NA,NA,194.70,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_35697",2,"2",47325513,NA,NA,195.66,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_35700",2,"2",47326506,NA,NA,196.63,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_35701",2,"2",47327334,NA,NA,196.63,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_35702",2,"2",47327423,NA,NA,196.63,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_35706",2,"2",47327566,NA,NA,197.84,1,1,0,1,0,0,0,1,0,0
     "solcap_snp_c1_11458",2,"2",47625835,NA,NA,200.53,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c1_11459",2,"2",47625847,NA,NA,201.80,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_38551",2,"2",47627255,NA,NA,201.81,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_38552",2,"2",47627384,NA,NA,201.81,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_38553",2,"2",47627420,NA,NA,201.95,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_38555",2,"2",47627603,NA,NA,202.72,1,2,0,1,0,0,1,0,0,1
     "solcap_snp_c1_5931",2,"2",48498256,NA,NA,206.31,2,3,1,1,0,0,1,0,1,1
     "solcap_snp_c1_5895",2,"2",48565009,NA,NA,206.32,1,1,1,0,0,0,0,0,1,0
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.001 0.005
     Iter: 2 0.024 0.000 0.001 0.007
     Iter: 3 0.028 0.000 0.000 0.008
     Iter: 4 0.030 0.000 0.000 0.008
     Iter: 5 0.030 0.000 0.000 0.008
     Iter: 6 0.031 0.000 0.000 0.008
     Iter: 7 0.031 0.000 0.000 0.008
     Iter: 8 0.031 0.000 0.000 0.008
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
    
     Linkage group 1 ...
     INFO: Going singlemode. Using one CPU for calculation.
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
    
     Linkage group 1 ...
     trying URL 'https://github.com/mmollina/MAPpoly_vignettes/raw/master/data/sweet_sample_ch3.vcf.gz'
     Content type 'text/plain; charset=utf-8' length 1416917 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading data...
     Scanning file to determine attributes.
     File attributes:
     meta lines: 8
     header_line: 9
     variant count: 200
     column count: 326
    
     Meta line 8 read in.
     All meta lines processed.
     gt matrix initialized.
     Character matrix gt created.
     Character matrix gt rows: 200
     Character matrix gt cols: 326
     skip: 0
     nrows: 200
     row_num: 0
    
     Processed variant: 200
     All variants processed
     Processing genotypes...Done!
     Selected ploidy: 6
     Done!
     Read the following data:
     Ploidy level: 6
     No. individuals: 315
     No. markers: 167
     No. informative markers: 167 (100%)
     This dataset contains chromosome information.
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     This is an object of class 'mappoly.data'
     Ploidy level: 6
     No. individuals: 315
     No. markers: 164
     Missing data under prob. threshold: 6.01%
     Redundant markers: 1.8%
    
     No. markers per chromosome: not available
     ----------
     No. of markers per dosage combination in both parents:
     P1 P2 freq
     0 1 50
     0 2 8
     0 3 4
     0 4 1
     1 0 26
     1 1 12
     1 2 9
     1 3 4
     1 4 1
     2 0 3
     2 1 10
     2 2 7
     2 3 7
     2 4 4
     3 0 3
     3 1 3
     3 2 7
     3 3 1
     4 0 1
     4 1 2
     4 2 1
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/SolCAP_dosage'
     Content type 'text/plain; charset=utf-8' length 1445956 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 160
     No. markers: 4017
     No. informative markers: 4017 (100%)
     ...
    
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/hexa_sample'
     Content type 'text/plain; charset=utf-8' length 142904 bytes (139 KB)
     ==================================================
     downloaded 139 KB
    
     Reading the following data:
     Ploidy level: 6
     No. individuals: 50
     No. markers: 100
     No. informative markers: 71 (71%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/tetra_solcap.csv'
     Content type 'text/plain; charset=utf-8' length 1448564 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 160
     No. markers: 4017
     No. informative markers: 4017 (100%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Done with filtering.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/fitpoly.dat'
     Content type 'text/plain; charset=utf-8' length 3563386 bytes (3.4 MB)
     ==================================================
     downloaded 3.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 150
     No. markers: 145
     No. informative markers: 138 (95.2%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     This is an object of class 'mappoly.data'
     Ploidy level: 4
     No. individuals: 150
     No. markers: 138
     Missing data: 3.89%
    
     No. markers per chromosome: not available
     ----------
     No. of markers per dosage combination in both parents:
     P1 P2 freq
     0 1 18
     0 2 24
     1 0 18
     1 1 19
     1 2 10
     1 3 3
     2 0 13
     2 1 6
     2 2 15
     2 3 2
     3 1 1
     3 2 5
     3 3 2
     3 4 1
     4 2 1
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007
     Iter: 1 0.031 0.000 0.000 0.008
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 20
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.002 0.006 0.006 0.007 0.006 0.011 0.008 0.004 0.003 0.001 0.004 0.001 0.003 0.007 0.009 0.009 0.000
     Iter: 2 0.024 0.000 0.001 0.007 0.007 0.009 0.006 0.014 0.010 0.004 0.003 0.001 0.004 0.001 0.004 0.009 0.013 0.016 0.000
     Iter: 3 0.028 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.001 0.004 0.009 0.016 0.020 0.000
     Iter: 4 0.029 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.004 0.008 0.018 0.024 0.000
     Iter: 5 0.030 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.008 0.020 0.027 0.000
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.007 0.021 0.029 0.000
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.006 0.021 0.031 0.000
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.005 0.022 0.032 0.000
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.004 0.022 0.033 0.000
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.004 0.022 0.034 0.000
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.035 0.000
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.035 0.000
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.036 0.000
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.036 0.000
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.001 0.024 0.037 0.000
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.001 0.024 0.037 0.000
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.037 0.000
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.037 0.000
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.038 0.000
     Iter: 23 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.038 0.000
     INFO: Going singlemode. Using one CPU for calculation.
     2 submaps found ...
     adding block 2 of 2
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
    
     M_1
     ----------------------------------
     dosage P1: 1
     dosage P2: 2
     ----
     dosage distribution
     0 1 2 3 mis
     23 120 126 31 0
     ----
     expected polysomic segregation
     0 1 2 3 4 5 6
     0.1 0.4 0.4 0.1 0.0 0.0 0.0
     ----------------------------------
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.017 0.010
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.029 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010
     Iter: 1 0.030 0.000 0.000 0.007 0.007 0.009 0.006 0.017 0.010
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.006 0.006 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.014
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.012
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.010
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.010
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.009
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.009
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 23 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 24 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Updating map 1
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 127 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test-cahe_twopts.R:8:3): compute genotype counts correctly ───────────
     Error in `get_cache_two_pts_from_web(ploidy = 4)`: Cache file not found. Try to use get.from.web = FALSE
     Backtrace:
     ▆
     1. └─mappoly::get_cache_two_pts_from_web(ploidy = 4) at test-cahe_twopts.R:8:2
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 127 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.3.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [103s/537s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > if(requireNamespace("testthat", quietly = TRUE)){
     + library(testthat)
     + library(mappoly)
     + test_check("mappoly")
     + }
     =====================================================
     MAPpoly Package [Version 0.3.02022-01-11 09:22:41 UTC]
     More information: https://github.com/mmollina/MAPpoly
     =====================================================
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     INFO: Going singlemode. Using one CPU.
     Stress: 0.30318
     Mean Nearest Neighbour Fit: 6.18154INFO: Using 2 CPUs for calculation.
     INFO: Done with 2701 pairs of markers
     INFO: Calculation took: 20.26 seconds
     INFO: Using 2 CPUs for calculation.
     INFO: Done with 2701 pairs of markers
     INFO: Calculation took: 23.999 seconds
     Going RcppParallel mode.
     ...
     Done with pairwise computation.
     ~~~~~~~
     Reorganizing results
     ...
     Caching the following dosage combination:
     P.k P.k+1 Q.k Q.k+1
     Conf.1 3 0 2 1
     Conf.2 3 3 2 2
     Conf.3 3 4 2 3
     Conf.4 4 0 3 1
     Conf.5 4 3 3 2
     Conf.6 4 4 3 3
     INFO: Going singlemode. Using one Core/CPU/PC for calculation.
     INFO: Done with 6 phase configurations
     INFO: Calculation took: 1.185 seconds
     This is an object of class 'cache.info'
     -----------------------------------------------------
     Ploidy level: 4
     No. marker combinations: 625
     -----------------------------------------------------
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
     Ploidy level:4
     Number of individuals:160
     ..................................................
     ..................................................
     ..................................................
     ..........
     Ploidy level:4
     Number of individuals:160
     ..................................................
     ..................................................
     ..................................................
     ..........
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     This is an object of class 'mappoly.map'
     Ploidy level: 4
     No. individuals: 160
     No. markers: 5
     No. linkage phases: 1
    
     ---------------------------------------------
     Linkage phase configuration: 1
     log-likelihood: -123.7037
     LOD: 0
    
     a b c d e f g h
     solcap_snp_c2_4408 o o o o o o o | 0.0
     solcap_snp_c2_21332 o o o | o o | | 0.7
     solcap_snp_c2_21314 o o o o o o o | 0.8
     solcap_snp_c2_4437 o o o | o o | | 0.9
     solcap_snp_c2_6674 | | | | | | | o 0.9
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     Number of markers: 5
     4 markers...
     • Trying sequence: 1 2 3 4 :
     1 phase(s): .
     5/5:(100%) 7: 1 ph (1/1) -- tail: 4 |||| |||•
     Markers in the initial sequence: 5
     Mapped markers : 5 (100%)
     Number of markers: 5
     4 markers...
     • Trying sequence: 1 2 3 4 :
     1 phase(s): .
     5/5:(100%) 7: 1 ph (1/1) -- tail: 4 |||| |||•
     Markers in the initial sequence: 5
     Mapped markers : 5 (100%)
     Ploidy level: 4
     Rec. Frac. Limit: 0.5
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.019 0.007 0.012 0.007
     Iter: 2 0.028 0.006 0.015 0.008
     Iter: 3 0.032 0.005 0.016 0.009
     Iter: 4 0.034 0.005 0.017 0.010
     Iter: 5 0.036 0.004 0.017 0.011
     Iter: 6 0.036 0.004 0.017 0.011
     Iter: 7 0.037 0.003 0.017 0.012
     Iter: 8 0.037 0.003 0.017 0.013
     Iter: 9 0.037 0.003 0.016 0.013
     Iter: 10 0.037 0.002 0.016 0.014
     Iter: 11 0.037 0.002 0.016 0.014
     Iter: 12 0.037 0.002 0.016 0.014
     Iter: 13 0.037 0.002 0.016 0.015
     Iter: 14 0.038 0.002 0.016 0.015
     Iter: 15 0.038 0.002 0.016 0.015
     Iter: 16 0.038 0.002 0.016 0.015
     Iter: 17 0.038 0.002 0.016 0.016
     Iter: 18 0.038 0.002 0.016 0.016
     Iter: 19 0.038 0.002 0.016 0.016
     Iter: 20 0.038 0.002 0.016 0.016
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.001 0.005
     Iter: 2 0.024 0.000 0.001 0.007
     Iter: 3 0.028 0.000 0.000 0.008
     Iter: 4 0.030 0.000 0.000 0.008
     Iter: 5 0.030 0.000 0.000 0.008
     Iter: 6 0.031 0.000 0.000 0.008
     Iter: 7 0.031 0.000 0.000 0.008
     Iter: 8 0.031 0.000 0.000 0.008
     "Marker Name","LG","Ref Chrom","Ref Position","Ref Allele","Alt Allele","Map Position","Dose in P1","Dose in P2","ph.P.a","ph.P.b","ph.P.c","ph.P.d","ph.Q.e","ph.Q.f","ph.Q.g","ph.Q.h"
     "solcap_snp_c2_51460",1,"1", 151147,NA,NA, 0.00,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_36608",1,"1", 251032,NA,NA, 3.20,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_36615",1,"1", 252977,NA,NA, 3.21,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_36658",1,"1", 269300,NA,NA, 3.22,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_10930",1,"1", 309242,NA,NA, 3.92,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_36629",1,"1", 433701,NA,NA, 4.62,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_10915",1,"1", 481195,NA,NA, 5.56,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c1_10918",1,"1", 496966,NA,NA, 6.18,1,2,0,1,0,0,0,1,1,0
     "solcap_snp_c2_36650",1,"1", 507322,NA,NA, 7.67,1,2,0,1,0,0,0,1,1,0
     "solcap_snp_c2_36643",1,"1", 508489,NA,NA, 8.71,2,2,0,0,1,1,1,0,0,1
     "solcap_snp_c2_36660",1,"1", 534726,NA,NA, 9.12,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_36664",1,"1", 535354,NA,NA, 9.40,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c2_36686",1,"1", 601257,NA,NA, 9.41,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_54803",1,"1", 811809,NA,NA, 9.92,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c2_54800",1,"1", 813297,NA,NA, 9.93,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c2_54797",1,"1", 817305,NA,NA, 10.46,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_56714",1,"1", 931273,NA,NA, 10.47,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_6865",1,"1", 1513756,NA,NA, 12.72,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_6683",1,"1", 1828357,NA,NA, 15.31,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c1_2417",1,"1", 1838764,NA,NA, 15.32,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_6713",1,"1", 2068205,NA,NA, 15.58,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21098",1,"1", 2589396,NA,NA, 17.78,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21100",1,"1", 2591241,NA,NA, 19.16,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21233",1,"1", 2956217,NA,NA, 21.10,2,1,0,1,0,1,0,1,0,0
     "solcap_snp_c1_6704",1,"1", 2957498,NA,NA, 21.20,1,2,0,0,1,0,0,1,1,0
     "solcap_snp_c2_21236",1,"1", 2958510,NA,NA, 22.07,3,2,0,1,1,1,0,1,1,0
     "solcap_snp_c1_6123",1,"1", 3296081,NA,NA, 25.79,2,2,1,0,1,0,0,1,1,0
     "solcap_snp_c1_6114",1,"1", 3693321,NA,NA, 25.97,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_6109",1,"1", 3716835,NA,NA, 26.67,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_51791",1,"1", 4309511,NA,NA, 31.96,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_49938",1,"1", 4597936,NA,NA, 31.97,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_56125",1,"1", 5291666,NA,NA, 34.56,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_45058",1,"1", 5347412,NA,NA, 35.15,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_45071",1,"1", 5386765,NA,NA, 36.19,3,1,1,1,0,1,1,0,0,0
     "solcap_snp_c2_45064",1,"1", 5502148,NA,NA, 36.69,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_13289",1,"1", 5504921,NA,NA, 36.70,2,3,1,0,0,1,0,1,1,1
     "solcap_snp_c1_13293",1,"1", 5505413,NA,NA, 36.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_27877",1,"1", 6071274,NA,NA, 38.46,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_27878",1,"1", 6071298,NA,NA, 38.47,1,1,0,0,0,1,1,0,0,0
     "solcap_snp_c2_27882",1,"1", 6071676,NA,NA, 38.73,3,1,0,1,1,1,1,0,0,0
     "solcap_snp_c2_27884",1,"1", 6071778,NA,NA, 38.74,3,1,0,1,1,1,1,0,0,0
     "solcap_snp_c2_27885",1,"1", 6071817,NA,NA, 39.13,0,3,0,0,0,0,0,1,1,1
     "solcap_snp_c2_27903",1,"1", 6295642,NA,NA, 40.12,2,3,0,1,0,1,0,1,1,1
     "solcap_snp_c2_27918",1,"1", 6587772,NA,NA, 40.56,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_48155",1,"1", 7165330,NA,NA, 41.98,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_48154",1,"1", 7165840,NA,NA, 42.33,2,3,0,1,0,1,0,1,1,1
     "solcap_snp_c2_50011",1,"1", 7446981,NA,NA, 42.34,2,3,1,0,1,0,0,1,1,1
     "solcap_snp_c1_16312",1,"1", 7641280,NA,NA, 43.72,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52709",1,"1", 8645609,NA,NA, 44.63,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52712",1,"1", 8645693,NA,NA, 44.64,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52705",1,"1", 8653609,NA,NA, 45.12,2,1,0,1,0,1,0,1,0,0
     "solcap_snp_c2_48549",1,"1",10570936,NA,NA, 52.54,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_48563",1,"1",10573573,NA,NA, 52.55,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_55639",1,"1",11235975,NA,NA, 52.56,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_56356",1,"1",11737675,NA,NA, 52.57,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_56359",1,"1",11742617,NA,NA, 52.81,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_57284",1,"1",11774518,NA,NA, 53.18,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_45637",1,"1",12022263,NA,NA, 53.55,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_55008",1,"1",12994177,NA,NA, 57.69,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_53521",1,"1",13266849,NA,NA, 57.70,2,2,0,1,0,1,0,0,1,1
     "solcap_snp_c2_43984",1,"1",13369857,NA,NA, 57.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_12938",1,"1",13392343,NA,NA, 58.21,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_43970",1,"1",13545289,NA,NA, 59.61,1,1,0,1,0,0,0,0,1,0
     "solcap_snp_c2_43973",1,"1",13547044,NA,NA, 60.07,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c1_8908",1,"1",13656016,NA,NA, 60.91,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_54355",1,"1",13740719,NA,NA, 63.95,2,2,1,0,1,0,0,1,0,1
     "solcap_snp_c2_54353",1,"1",13747285,NA,NA, 66.18,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_49867",1,"1",16399117,NA,NA, 66.19,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_48568",1,"1",17370536,NA,NA, 66.20,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c1_8593",1,"1",17664021,NA,NA, 66.21,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_53759",1,"1",18753871,NA,NA, 66.22,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_56842",1,"1",18925684,NA,NA, 66.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c1_16421",1,"1",18926984,NA,NA, 66.59,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_14663",1,"1",19664067,NA,NA, 66.71,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_49326",1,"1",20549734,NA,NA, 68.28,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c1_5477",1,"1",23657080,NA,NA, 68.29,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_43643",1,"1",29180891,NA,NA, 69.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_22549",1,"1",29678234,NA,NA, 69.24,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_22546",1,"1",29679750,NA,NA, 69.25,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_7136",1,"1",30125081,NA,NA, 69.59,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_11066",1,"1",32091982,NA,NA, 69.93,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_9378",1,"1",34098178,NA,NA, 70.23,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_27683",1,"1",37067385,NA,NA, 70.27,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_27677",1,"1",37071329,NA,NA, 70.59,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42829",1,"1",38478335,NA,NA, 71.26,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_15714",1,"1",39325633,NA,NA, 71.51,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_45395",1,"1",39529256,NA,NA, 71.81,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_49732",1,"1",41859322,NA,NA, 73.88,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_14648",1,"1",41947283,NA,NA, 73.89,4,1,1,1,1,1,0,1,0,0
     "solcap_snp_c1_14654",1,"1",41979022,NA,NA, 73.90,4,1,1,1,1,1,0,1,0,0
     "solcap_snp_c2_32111",1,"1",42197632,NA,NA, 73.91,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_32112",1,"1",42197668,NA,NA, 74.94,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_50028",1,"1",43180567,NA,NA, 76.56,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_50023",1,"1",43196126,NA,NA, 77.18,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_49042",1,"1",43330828,NA,NA, 78.19,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_16169",1,"1",44194024,NA,NA, 81.89,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_14248",1,"1",44696488,NA,NA, 81.90,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c1_14249",1,"1",44696500,NA,NA, 82.40,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_14259",1,"1",44700858,NA,NA, 82.41,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_14261",1,"1",44702300,NA,NA, 82.42,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c2_53708",1,"1",44890351,NA,NA, 83.08,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_40131",1,"1",45751390,NA,NA, 83.09,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_54811",1,"1",46271054,NA,NA, 83.10,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_15855",1,"1",46323471,NA,NA, 83.11,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_35220",1,"1",47299682,NA,NA, 83.12,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_35218",1,"1",47300005,NA,NA, 83.13,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_35601",1,"1",50791085,NA,NA, 85.14,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_694",1,"1",51290105,NA,NA, 85.74,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_686",1,"1",51324458,NA,NA, 85.80,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c2_57898",1,"1",51736618,NA,NA, 85.81,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_880",1,"1",54480981,NA,NA, 86.14,4,3,1,1,1,1,1,1,1,0
     "solcap_snp_c2_55113",1,"1",54580381,NA,NA, 86.15,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_2874",1,"1",55163851,NA,NA, 86.16,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_55621",1,"1",55427211,NA,NA, 86.17,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_55618",1,"1",55427602,NA,NA, 86.35,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c1_14633",1,"1",57931788,NA,NA, 91.38,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_2721",1,"1",58197548,NA,NA, 91.39,1,1,0,0,0,1,1,0,0,0
     "solcap_snp_c2_2653",1,"1",58737622,NA,NA, 92.93,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_2591",1,"1",58985511,NA,NA, 93.92,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_13430",1,"1",59363361,NA,NA, 95.09,1,3,0,1,0,0,1,0,1,1
     "solcap_snp_c2_46523",1,"1",59973949,NA,NA, 95.82,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_46521",1,"1",59974282,NA,NA, 95.83,2,3,1,0,1,0,1,1,1,0
     "solcap_snp_c2_46520",1,"1",59974316,NA,NA, 95.84,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_53347",1,"1",60026944,NA,NA, 96.47,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_35511",1,"1",60433785,NA,NA, 96.48,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35518",1,"1",60512480,NA,NA, 96.49,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35520",1,"1",60513199,NA,NA, 96.50,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35536",1,"1",60515867,NA,NA, 97.95,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_35537",1,"1",60516874,NA,NA, 97.96,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_43926",1,"1",60887837,NA,NA, 98.27,2,2,0,1,0,1,1,0,0,1
     "solcap_snp_c2_56267",1,"1",60919490,NA,NA, 99.07,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c2_20798",1,"1",60951573,NA,NA, 99.08,2,2,1,1,0,0,0,1,1,0
     "solcap_snp_c2_20799",1,"1",60951606,NA,NA, 99.29,2,2,0,0,1,1,1,0,0,1
     "solcap_snp_c2_20803",1,"1",60987155,NA,NA, 99.52,1,2,0,0,0,1,1,0,0,1
     "solcap_snp_c2_20890",1,"1",61310805,NA,NA,101.03,3,3,1,1,1,0,1,1,1,0
     "solcap_snp_c2_50903",1,"1",61774492,NA,NA,101.77,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_38428",1,"1",62058660,NA,NA,102.74,1,1,0,0,0,1,0,0,0,1
     "solcap_snp_c2_38406",1,"1",62144916,NA,NA,103.16,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_38404",1,"1",62148178,NA,NA,103.17,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c2_38448",1,"1",62289476,NA,NA,104.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_12106",1,"1",62802674,NA,NA,106.27,1,3,0,0,0,1,1,0,1,1
     "solcap_snp_c2_41337",1,"1",62930793,NA,NA,106.84,1,3,0,0,0,1,1,0,1,1
     "solcap_snp_c2_32359",1,"1",63208419,NA,NA,108.73,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_9679",1,"1",63338027,NA,NA,110.16,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_12057",1,"1",63596472,NA,NA,111.12,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_13686",1,"1",64120988,NA,NA,113.01,2,3,0,0,1,1,1,0,1,1
     "solcap_snp_c2_46195",1,"1",64259858,NA,NA,113.66,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_13751",1,"1",64614114,NA,NA,113.95,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_4415",1,"1",65036984,NA,NA,116.70,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c2_13675",1,"1",65036993,NA,NA,116.94,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_13676",1,"1",65054301,NA,NA,116.95,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_13671",1,"1",65062849,NA,NA,116.96,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c2_13653",1,"1",65270150,NA,NA,117.37,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c2_13650",1,"1",65277543,NA,NA,117.38,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_4744",1,"1",65472678,NA,NA,118.20,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_14467",1,"1",65694581,NA,NA,118.81,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14470",1,"1",65697018,NA,NA,118.83,2,4,1,0,0,1,1,1,1,1
     "solcap_snp_c1_4706",1,"1",65780052,NA,NA,119.64,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14487",1,"1",65780861,NA,NA,119.65,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14489",1,"1",65781907,NA,NA,119.66,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14491",1,"1",65782311,NA,NA,119.69,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_14492",1,"1",65782372,NA,NA,119.70,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_14493",1,"1",65782860,NA,NA,120.27,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_4745",1,"1",66094082,NA,NA,123.09,2,2,1,0,0,1,1,1,0,0
     "solcap_snp_c1_4748",1,"1",66259325,NA,NA,123.10,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14589",1,"1",66283156,NA,NA,123.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_37564",1,"1",66307265,NA,NA,123.24,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_14595",1,"1",66307870,NA,NA,123.66,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_37566",1,"1",66307870,NA,NA,123.67,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_4752",1,"1",66336597,NA,NA,124.20,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14608",1,"1",66349497,NA,NA,124.47,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_4757",1,"1",66354237,NA,NA,124.83,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_4763",1,"1",66376115,NA,NA,124.84,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c1_5150",1,"1",66675718,NA,NA,127.51,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_58099",1,"1",66845540,NA,NA,127.69,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_5145",1,"1",66904071,NA,NA,127.70,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_20569",1,"1",67013419,NA,NA,132.36,3,1,1,1,1,0,0,0,1,0
     "solcap_snp_c2_20501",1,"1",67211402,NA,NA,136.36,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c2_20502",1,"1",67221811,NA,NA,137.02,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c2_20505",1,"1",67223365,NA,NA,138.09,3,2,0,1,1,1,0,0,1,1
     "solcap_snp_c2_20506",1,"1",67223618,NA,NA,139.27,3,3,0,1,1,1,1,0,1,1
     "solcap_snp_c2_20508",1,"1",67224636,NA,NA,139.92,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_20513",1,"1",67277917,NA,NA,140.32,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_20521",1,"1",67293276,NA,NA,140.85,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_20522",1,"1",67294203,NA,NA,141.34,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_6501",1,"1",67459562,NA,NA,142.30,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_6518",1,"1",67605601,NA,NA,142.31,2,2,0,1,0,1,0,0,1,1
     "solcap_snp_c2_13766",1,"1",67896690,NA,NA,142.32,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_52492",1,"1",67969508,NA,NA,143.43,3,2,1,1,0,1,0,0,1,1
     "solcap_snp_c2_52484",1,"1",68069976,NA,NA,144.07,1,2,0,0,1,0,1,1,0,0
     "solcap_snp_c2_49451",1,"1",68416146,NA,NA,145.42,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_14044",1,"1",68529607,NA,NA,146.51,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_51055",1,"1",68950490,NA,NA,147.79,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c1_11769",1,"1",69200071,NA,NA,148.59,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_39834",1,"1",69381232,NA,NA,149.22,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_17592",1,"1",69809943,NA,NA,150.28,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_17529",1,"1",69902111,NA,NA,150.29,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_17531",1,"1",70016341,NA,NA,151.13,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_17537",1,"1",70097616,NA,NA,151.14,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c1_15579",1,"1",70341165,NA,NA,151.68,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c1_15580",1,"1",70341195,NA,NA,151.91,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c2_53380",1,"1",70371798,NA,NA,152.63,3,2,0,1,1,1,0,0,1,1
     "solcap_snp_c2_53381",1,"1",70372029,NA,NA,153.40,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c2_17191",1,"1",70474751,NA,NA,153.41,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_5657",1,"1",70560319,NA,NA,154.13,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c1_5656",1,"1",70562884,NA,NA,154.14,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_5653",1,"1",70697401,NA,NA,154.15,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_3860",1,"1",71009488,NA,NA,155.37,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c1_3863",1,"1",71009686,NA,NA,156.05,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_12076",1,"1",71090664,NA,NA,156.55,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_3867",1,"1",71239298,NA,NA,157.43,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_3868",1,"1",71239559,NA,NA,157.65,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_3876",1,"1",71278255,NA,NA,158.09,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_12106",1,"1",71298195,NA,NA,158.31,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_3894",1,"1",71421320,NA,NA,158.74,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_12126",1,"1",71450592,NA,NA,159.39,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_12216",1,"1",72051429,NA,NA,160.94,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_12217",1,"1",72051456,NA,NA,160.97,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_3848",1,"1",72108418,NA,NA,160.98,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_3851",1,"1",72112064,NA,NA,160.99,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_9565",1,"1",72320561,NA,NA,162.31,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_9566",1,"1",72320582,NA,NA,162.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_9573",1,"1",72504567,NA,NA,162.33,2,2,0,1,1,0,0,0,1,1
     "solcap_snp_c2_31820",1,"1",72528671,NA,NA,163.44,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_31821",1,"1",72531263,NA,NA,163.45,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_9583",1,"1",72540600,NA,NA,163.66,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c1_9587",1,"1",72541075,NA,NA,163.67,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_14274",1,"1",74061621,NA,NA,166.55,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c1_4617",1,"1",74355434,NA,NA,168.09,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_14365",1,"1",74688262,NA,NA,168.11,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14366",1,"1",74688318,NA,NA,168.54,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c1_14931",1,"1",75007319,NA,NA,168.55,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_16369",1,"1",75164058,NA,NA,169.98,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c1_5267",1,"1",75333553,NA,NA,170.01,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_5281",1,"1",75441912,NA,NA,170.02,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_5286",1,"1",75477570,NA,NA,170.90,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_16424",1,"1",75478258,NA,NA,171.43,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_16425",1,"1",75485276,NA,NA,171.73,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_16466",1,"1",75749019,NA,NA,171.74,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c1_5346",1,"1",75789912,NA,NA,172.18,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_16435",1,"1",76304406,NA,NA,172.61,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c2_2509",1,"1",76406745,NA,NA,172.62,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_2291",1,"1",76480645,NA,NA,173.91,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_641",1,"1",76511147,NA,NA,173.93,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_2420",1,"1",76953005,NA,NA,175.04,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_2423",1,"1",76958677,NA,NA,175.41,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_2424",1,"1",76960116,NA,NA,176.33,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_2427",1,"1",76960344,NA,NA,177.73,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c2_2450",1,"1",77056087,NA,NA,177.96,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2463",1,"1",77190863,NA,NA,178.95,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2464",1,"1",77190891,NA,NA,178.96,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2466",1,"1",77191250,NA,NA,179.19,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2505",1,"1",77350779,NA,NA,179.67,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_2508",1,"1",77353050,NA,NA,180.18,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_758",1,"1",77526728,NA,NA,180.52,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_2201",1,"1",77738922,NA,NA,180.88,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_601",1,"1",78168030,NA,NA,182.58,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_607",1,"1",78176086,NA,NA,182.59,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2299",1,"1",78192398,NA,NA,183.05,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_2354",1,"1",78430745,NA,NA,183.73,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_50486",1,"1",78756800,NA,NA,184.18,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50484",1,"1",78757017,NA,NA,184.41,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50483",1,"1",78757327,NA,NA,184.64,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50502",1,"1",78809381,NA,NA,184.88,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c1_15872",1,"1",78928170,NA,NA,185.35,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_7007",1,"1",79083850,NA,NA,189.67,2,2,1,0,1,0,0,1,1,0
     "solcap_snp_c1_2484",1,"1",79157311,NA,NA,193.43,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_7094",1,"1",79187093,NA,NA,193.46,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_7193",1,"1",79391798,NA,NA,193.94,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_7208",1,"1",79456001,NA,NA,197.09,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c1_2519",1,"1",79487369,NA,NA,197.10,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c1_2520",1,"1",79487485,NA,NA,197.40,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_7241",1,"1",79678600,NA,NA,197.59,3,3,1,1,0,1,1,0,1,1
     "solcap_snp_c2_7242",1,"1",79679061,NA,NA,197.60,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_7245",1,"1",79679433,NA,NA,197.96,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_7246",1,"1",79679919,NA,NA,198.32,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c1_2531",1,"1",79711129,NA,NA,198.33,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_7328",1,"1",79955769,NA,NA,199.81,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_6990",1,"1",80077222,NA,NA,200.92,2,3,1,0,0,1,0,1,1,1
     "solcap_snp_c1_2458",1,"1",80121157,NA,NA,200.93,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_7053",1,"1",80228512,NA,NA,202.00,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7055",1,"1",80229751,NA,NA,203.13,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7056",1,"1",80229823,NA,NA,203.59,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_7061",1,"1",80230621,NA,NA,204.94,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7062",1,"1",80230636,NA,NA,204.95,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c1_1853",1,"1",80429124,NA,NA,205.22,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_5091",1,"1",80558977,NA,NA,206.13,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_5077",1,"1",80591992,NA,NA,207.68,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_5078",1,"1",80592039,NA,NA,208.01,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_5039",1,"1",80669402,NA,NA,209.26,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_9727",1,"1",80833354,NA,NA,209.27,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_9726",1,"1",80833555,NA,NA,209.28,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_9722",1,"1",80835882,NA,NA,209.91,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_9988",1,"1",81013079,NA,NA,212.06,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_9925",1,"1",81410356,NA,NA,212.44,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_9892",1,"1",81567397,NA,NA,215.81,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_9864",1,"1",81615881,NA,NA,215.82,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c1_3275",1,"1",81750527,NA,NA,217.23,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_3255",1,"1",81795335,NA,NA,217.88,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c1_3241",1,"1",81924813,NA,NA,219.27,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_3234",1,"1",81927346,NA,NA,219.38,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_47360",1,"1",82220028,NA,NA,221.34,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4896",1,"1",82628961,NA,NA,222.55,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_4799",1,"1",82927941,NA,NA,222.86,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_1638",1,"1",82935846,NA,NA,222.87,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_1653",1,"1",83012188,NA,NA,225.35,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c1_1683",1,"1",83059366,NA,NA,226.88,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4844",1,"1",83060466,NA,NA,227.75,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c2_4845",1,"1",83060720,NA,NA,229.69,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4860",1,"1",83130390,NA,NA,229.71,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_4864",1,"1",83138355,NA,NA,230.11,2,4,0,1,0,1,1,1,1,1
     "solcap_snp_c2_4875",1,"1",83177618,NA,NA,231.71,3,1,1,1,1,0,1,0,0,0
     "solcap_snp_c2_4884",1,"1",83186994,NA,NA,232.67,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_4885",1,"1",83187000,NA,NA,232.90,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_4898",1,"1",83283573,NA,NA,232.91,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4904",1,"1",83416355,NA,NA,234.34,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4907",1,"1",83418574,NA,NA,236.34,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4910",1,"1",83419340,NA,NA,237.80,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_1737",1,"1",83602469,NA,NA,238.45,2,3,0,1,0,1,1,0,1,1
     "solcap_snp_c1_1739",1,"1",83608625,NA,NA,240.68,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_4614",1,"1",83843457,NA,NA,240.69,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_4664",1,"1",84062694,NA,NA,242.21,1,3,0,0,0,1,0,1,1,1
     "solcap_snp_c2_4708",1,"1",84214693,NA,NA,244.20,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_4713",1,"1",84217673,NA,NA,244.21,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_36495",1,"1",84457206,NA,NA,244.46,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_34546",1,"1",84727952,NA,NA,246.10,1,3,0,0,0,1,0,1,1,1
     "solcap_snp_c1_10354",1,"1",84979069,NA,NA,251.03,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_22",1,"1",85243830,NA,NA,251.60,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_24",1,"1",85323495,NA,NA,255.50,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_13385",1,"1",85715515,NA,NA,256.96,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_46448",1,"1",85760106,NA,NA,256.97,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_53075",1,"1",85902499,NA,NA,257.70,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_42943",1,"1",85953353,NA,NA,258.40,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_49917",1,"1",86090288,NA,NA,258.41,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_49911",1,"1",86095463,NA,NA,258.42,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_49910",1,"1",86095890,NA,NA,258.43,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14839",1,"1",86328984,NA,NA,260.84,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14707",1,"1",86355213,NA,NA,260.85,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14708",1,"1",86356234,NA,NA,262.85,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14709",1,"1",86356378,NA,NA,262.86,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_4796",1,"1",86388041,NA,NA,263.11,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14730",1,"1",86441357,NA,NA,266.54,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14733",1,"1",86527670,NA,NA,267.31,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_4799",1,"1",86663770,NA,NA,269.34,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14761",1,"1",86750111,NA,NA,270.26,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14762",1,"1",86750599,NA,NA,270.54,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14763",1,"1",86847560,NA,NA,270.82,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14764",1,"1",86847664,NA,NA,271.20,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14772",1,"1",86877778,NA,NA,271.58,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14779",1,"1",86887803,NA,NA,274.05,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_4803",1,"1",86942483,NA,NA,276.39,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14827",1,"1",87096629,NA,NA,277.06,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14840",1,"1",87161581,NA,NA,278.23,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_14841",1,"1",87161695,NA,NA,279.54,3,3,1,0,1,1,0,1,1,1
     "solcap_snp_c2_14848",1,"1",87196823,NA,NA,280.06,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c2_37836",1,"1",87392825,NA,NA,282.11,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_37820",1,"1",87463711,NA,NA,282.12,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_11288",1,"1",87558384,NA,NA,282.13,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_11308",1,"1",87663528,NA,NA,287.31,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_37850",1,"1",87731594,NA,NA,287.32,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_37816",1,"1",87746020,NA,NA,288.43,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_9428",1,"1",87944667,NA,NA,298.18,3,1,1,1,1,0,0,1,0,0
     "solcap_snp_c1_9430",1,"1",87965033,NA,NA,302.34,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_22105",1,"1",88057376,NA,NA,306.51,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_9413",1,"1",88294049,NA,NA,309.12,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_9406",1,"1",88347489,NA,NA,309.94,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_30963",1,"1",88362769,NA,NA,313.20,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_30961",1,"1",88389459,NA,NA,313.21,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_9397",1,"1",88409394,NA,NA,314.43,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_9392",1,"1",88434818,NA,NA,314.44,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_30958",1,"1",88451845,NA,NA,316.36,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_30956",1,"1",88452032,NA,NA,316.37,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_30955",1,"1",88452236,NA,NA,316.38,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_1504",2,"2", 4479289,NA,NA, 0.00,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_4344",2,"2", 4884993,NA,NA, 0.49,0,3,0,0,0,0,1,1,1,0
     "solcap_snp_c2_4354",2,"2", 5159401,NA,NA, 0.65,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_48725",2,"2", 5510874,NA,NA, 0.65,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_3750",2,"2", 6090174,NA,NA, 1.63,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_11591",2,"2", 6647886,NA,NA, 2.61,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_3747",2,"2", 7050814,NA,NA, 2.82,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_4515",2,"2", 8246308,NA,NA, 3.03,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_14690",2,"2", 8398966,NA,NA, 3.03,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_14648",2,"2", 8799627,NA,NA, 3.47,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c1_4792",2,"2", 8802985,NA,NA, 4.42,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_14645",2,"2", 9338437,NA,NA, 5.05,2,0,0,0,1,1,0,0,0,0
     "solcap_snp_c2_730",2,"2",12188889,NA,NA, 5.70,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_41887",2,"2",15292858,NA,NA, 6.44,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_47096",2,"2",16846846,NA,NA, 8.89,0,3,0,0,0,0,0,1,1,1
     "solcap_snp_c2_17387",2,"2",20193366,NA,NA, 9.64,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_17427",2,"2",20681191,NA,NA, 11.77,3,0,1,1,1,0,0,0,0,0
     "solcap_snp_c2_17428",2,"2",20681220,NA,NA, 12.45,1,3,0,0,0,1,1,1,0,1
     "solcap_snp_c1_5739",2,"2",20681710,NA,NA, 13.09,3,0,1,1,1,0,0,0,0,0
     "solcap_snp_c1_11344",2,"2",21725517,NA,NA, 18.09,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_38022",2,"2",22006999,NA,NA, 18.88,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_32421",2,"2",22621554,NA,NA, 21.89,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_9719",2,"2",22749359,NA,NA, 22.13,0,3,0,0,0,0,1,1,0,1
     "solcap_snp_c2_39705",2,"2",23426100,NA,NA, 25.47,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_39677",2,"2",23550342,NA,NA, 26.12,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_37256",2,"2",23737215,NA,NA, 27.42,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_11122",2,"2",23799802,NA,NA, 27.43,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_33996",2,"2",24149138,NA,NA, 30.38,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_53818",2,"2",24744880,NA,NA, 30.38,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_15402",2,"2",24899862,NA,NA, 31.49,4,1,1,1,1,1,0,0,1,0
     "solcap_snp_c2_52630",2,"2",24910552,NA,NA, 34.48,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_21752",2,"2",25050163,NA,NA, 36.52,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_6841",2,"2",25051854,NA,NA, 37.05,4,1,1,1,1,1,0,0,1,0
     "solcap_snp_c2_21746",2,"2",25072703,NA,NA, 37.40,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_21722",2,"2",25322160,NA,NA, 38.34,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_21717",2,"2",25423184,NA,NA, 40.23,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c1_9369",2,"2",26798985,NA,NA, 42.18,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_45392",2,"2",27065211,NA,NA, 42.79,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_45307",2,"2",27086772,NA,NA, 43.77,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_45310",2,"2",27088140,NA,NA, 43.93,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_45311",2,"2",27088340,NA,NA, 44.25,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_13459",2,"2",27143875,NA,NA, 45.22,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13465",2,"2",27190187,NA,NA, 45.92,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_12339",2,"2",27411139,NA,NA, 45.94,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_12345",2,"2",27412322,NA,NA, 46.50,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_12305",2,"2",27458950,NA,NA, 46.91,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_12310",2,"2",27553365,NA,NA, 47.61,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_41980",2,"2",27557427,NA,NA, 48.15,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_12330",2,"2",27618598,NA,NA, 48.15,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42059",2,"2",27676633,NA,NA, 48.15,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_38940",2,"2",27856761,NA,NA, 48.63,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_38938",2,"2",27860023,NA,NA, 49.54,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_38936",2,"2",27860101,NA,NA, 49.88,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_11556",2,"2",28039994,NA,NA, 50.06,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_38952",2,"2",28230312,NA,NA, 52.01,4,1,1,1,1,1,0,0,0,1
     "solcap_snp_c2_19692",2,"2",28745987,NA,NA, 54.82,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_5091",2,"2",28830938,NA,NA, 55.63,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_5088",2,"2",28832209,NA,NA, 55.63,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_15749",2,"2",28938673,NA,NA, 56.86,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_48238",2,"2",29093635,NA,NA, 56.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_48237",2,"2",29093750,NA,NA, 56.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_14280",2,"2",29136032,NA,NA, 56.86,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_48195",2,"2",29136966,NA,NA, 58.21,3,1,1,0,1,1,1,0,0,0
     "solcap_snp_c1_14293",2,"2",29163304,NA,NA, 59.03,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_39155",2,"2",29312895,NA,NA, 59.03,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_39135",2,"2",29416066,NA,NA, 61.45,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_51113",2,"2",29665174,NA,NA, 61.69,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13912",2,"2",29883519,NA,NA, 63.21,1,2,0,1,0,0,0,1,0,1
     "solcap_snp_c2_46903",2,"2",29922714,NA,NA, 63.51,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_46904",2,"2",29922763,NA,NA, 63.51,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13929",2,"2",29928927,NA,NA, 63.80,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_46909",2,"2",29929969,NA,NA, 64.06,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_13910",2,"2",29990872,NA,NA, 64.32,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_13911",2,"2",30022458,NA,NA, 64.32,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_46885",2,"2",30044742,NA,NA, 64.33,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_46887",2,"2",30044882,NA,NA, 64.33,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_46898",2,"2",30147247,NA,NA, 64.62,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_7469",2,"2",30364207,NA,NA, 65.87,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_7412",2,"2",30401330,NA,NA, 66.50,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_7430",2,"2",30480570,NA,NA, 67.07,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_23170",2,"2",30785563,NA,NA, 68.54,1,3,0,1,0,0,1,0,1,1
     "solcap_snp_c2_23188",2,"2",31021446,NA,NA, 69.23,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_23192",2,"2",31060240,NA,NA, 70.07,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_54732",2,"2",31205330,NA,NA, 70.53,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_41534",2,"2",31571193,NA,NA, 71.69,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_13236",2,"2",31663185,NA,NA, 71.70,3,1,1,0,1,1,0,1,0,0
     "solcap_snp_c1_13233",2,"2",31714504,NA,NA, 71.70,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_39191",2,"2",32084708,NA,NA, 72.91,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c1_11581",2,"2",32220207,NA,NA, 74.63,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44771",2,"2",32647466,NA,NA, 75.14,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_44774",2,"2",32668501,NA,NA, 75.61,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44776",2,"2",32669850,NA,NA, 75.61,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44778",2,"2",32671297,NA,NA, 75.82,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44768",2,"2",32806437,NA,NA, 76.46,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_44769",2,"2",32820718,NA,NA, 76.70,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_44770",2,"2",32822882,NA,NA, 76.70,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_13051",2,"2",33076397,NA,NA, 76.70,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c1_4192",2,"2",33204619,NA,NA, 78.22,2,1,0,0,1,1,0,1,0,0
     "solcap_snp_c2_51998",2,"2",33270668,NA,NA, 78.76,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_51985",2,"2",33352028,NA,NA, 80.22,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_51990",2,"2",33357450,NA,NA, 80.23,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_48784",2,"2",33668370,NA,NA, 82.72,3,3,1,1,1,0,0,1,1,1
     "solcap_snp_c2_47037",2,"2",33978883,NA,NA, 85.33,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c1_12264",2,"2",34171806,NA,NA, 86.01,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_33141",2,"2",34594739,NA,NA, 88.89,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_33108",2,"2",34739225,NA,NA, 88.90,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_40155",2,"2",35112346,NA,NA, 90.03,2,3,0,0,1,1,1,1,1,0
     "solcap_snp_c2_50570",2,"2",35399177,NA,NA, 91.75,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_50394",2,"2",35549597,NA,NA, 92.94,2,1,1,1,0,0,0,0,0,1
     "solcap_snp_c2_50391",2,"2",35579108,NA,NA, 93.63,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_50412",2,"2",35600542,NA,NA, 93.63,4,3,1,1,1,1,1,1,1,0
     "solcap_snp_c2_50405",2,"2",35657756,NA,NA, 94.17,1,3,0,0,1,0,1,1,1,0
     "solcap_snp_c2_27433",2,"2",35990927,NA,NA, 94.67,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_27437",2,"2",36019472,NA,NA, 94.67,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_17973",2,"2",36229730,NA,NA, 95.07,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_17954",2,"2",36329410,NA,NA, 96.17,2,2,1,0,0,1,1,0,1,0
     "solcap_snp_c2_17938",2,"2",36364347,NA,NA, 96.74,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17937",2,"2",36364435,NA,NA, 96.99,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17935",2,"2",36364609,NA,NA, 97.09,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17932",2,"2",36364767,NA,NA, 97.18,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17930",2,"2",36364901,NA,NA, 97.18,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17926",2,"2",36365501,NA,NA, 97.38,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17925",2,"2",36365552,NA,NA, 97.79,2,2,0,1,1,0,0,1,0,1
     "solcap_snp_c2_17922",2,"2",36374598,NA,NA, 98.62,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17921",2,"2",36375406,NA,NA, 98.62,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17914",2,"2",36422560,NA,NA,100.07,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_17901",2,"2",36454929,NA,NA,101.33,2,1,1,0,0,1,1,0,0,0
     "solcap_snp_c2_17900",2,"2",36455067,NA,NA,101.95,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17899",2,"2",36455154,NA,NA,101.96,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17897",2,"2",36455571,NA,NA,101.96,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_17896",2,"2",36455607,NA,NA,101.96,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17895",2,"2",36455817,NA,NA,103.63,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_17816",2,"2",36728687,NA,NA,103.78,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_17809",2,"2",36799097,NA,NA,103.79,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_5846",2,"2",36959231,NA,NA,104.26,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_5845",2,"2",36959234,NA,NA,105.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_49495",2,"2",37017828,NA,NA,105.32,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c2_42169",2,"2",37438591,NA,NA,105.32,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_42172",2,"2",37439183,NA,NA,105.33,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c1_16170",2,"2",37474563,NA,NA,105.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_55632",2,"2",37474656,NA,NA,105.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_16171",2,"2",37475069,NA,NA,105.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_12373",2,"2",37530401,NA,NA,105.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_12382",2,"2",37654438,NA,NA,105.83,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_42241",2,"2",37676252,NA,NA,106.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35211",2,"2",37831945,NA,NA,106.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_10494",2,"2",37845965,NA,NA,106.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_10492",2,"2",37890758,NA,NA,106.83,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_10491",2,"2",37903554,NA,NA,107.24,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_35165",2,"2",37982943,NA,NA,108.38,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35139",2,"2",38046886,NA,NA,108.38,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_35113",2,"2",38121156,NA,NA,108.80,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_15466",2,"2",38386450,NA,NA,109.46,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53037",2,"2",38688112,NA,NA,109.46,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53036",2,"2",38688195,NA,NA,109.47,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53034",2,"2",38688354,NA,NA,109.47,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53033",2,"2",38688468,NA,NA,109.88,2,1,1,0,0,1,0,1,0,0
     "solcap_snp_c1_11955",2,"2",38837510,NA,NA,112.32,2,1,1,1,0,0,0,1,0,0
     "solcap_snp_c2_40635",2,"2",39073404,NA,NA,113.50,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_40638",2,"2",39073700,NA,NA,115.75,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42132",2,"2",39144989,NA,NA,115.75,1,3,0,0,1,0,1,0,1,1
     "solcap_snp_c2_42133",2,"2",39144999,NA,NA,115.75,1,3,0,0,1,0,1,0,1,1
     "solcap_snp_c2_42126",2,"2",39369111,NA,NA,115.80,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_42127",2,"2",39369213,NA,NA,115.80,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c1_8113",2,"2",39934151,NA,NA,120.10,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_8118",2,"2",39940655,NA,NA,120.12,2,3,0,0,1,1,1,0,1,1
     "solcap_snp_c1_8125",2,"2",39970010,NA,NA,120.19,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_25892",2,"2",40044441,NA,NA,122.61,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_25896",2,"2",40132579,NA,NA,122.66,3,3,1,0,1,1,1,0,1,1
     "solcap_snp_c2_25897",2,"2",40132705,NA,NA,122.66,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_25179",2,"2",40294633,NA,NA,123.40,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_7964",2,"2",40294982,NA,NA,126.16,3,3,1,1,1,0,1,1,0,1
     "solcap_snp_c2_7555",2,"2",41356969,NA,NA,128.16,0,2,0,0,0,0,0,1,1,0
     "solcap_snp_c2_7558",2,"2",41357718,NA,NA,128.59,0,2,0,0,0,0,0,1,1,0
     "solcap_snp_c2_7559",2,"2",41357748,NA,NA,128.59,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_7565",2,"2",41368149,NA,NA,129.00,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c1_2632",2,"2",41745246,NA,NA,130.15,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_2640",2,"2",41814961,NA,NA,130.65,2,3,0,0,1,1,1,1,1,0
     "solcap_snp_c1_2641",2,"2",41814973,NA,NA,131.72,2,1,0,0,1,1,1,0,0,0
     "solcap_snp_c1_2656",2,"2",41911152,NA,NA,133.37,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c1_2574",2,"2",42014614,NA,NA,133.68,2,3,1,1,0,0,0,1,1,1
     "solcap_snp_c2_7401",2,"2",42083055,NA,NA,136.14,3,3,0,1,1,1,1,0,1,1
     "solcap_snp_c2_7422",2,"2",42178610,NA,NA,137.92,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c1_2587",2,"2",42179852,NA,NA,138.59,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_7426",2,"2",42180225,NA,NA,139.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_57421",2,"2",42320846,NA,NA,141.09,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_16540",2,"2",42320852,NA,NA,141.19,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_15746",2,"2",42346419,NA,NA,142.45,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_22939",2,"2",42474531,NA,NA,144.58,2,1,1,1,0,0,0,0,0,1
     "solcap_snp_c1_7346",2,"2",42597250,NA,NA,146.12,2,2,1,1,0,0,1,0,0,1
     "solcap_snp_c2_22853",2,"2",42733575,NA,NA,146.95,3,2,0,1,1,1,0,1,1,0
     "solcap_snp_c1_7325",2,"2",42764357,NA,NA,147.64,1,1,1,0,0,0,0,0,0,1
     "solcap_snp_c2_27216",2,"2",43804789,NA,NA,152.13,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_27372",2,"2",44159308,NA,NA,155.23,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_27270",2,"2",44458161,NA,NA,155.71,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_27269",2,"2",44458317,NA,NA,155.71,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_27271",2,"2",44458644,NA,NA,158.41,2,3,0,0,1,1,1,1,0,1
     "solcap_snp_c1_8490",2,"2",44698531,NA,NA,160.85,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_43350",2,"2",44773146,NA,NA,162.25,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_43348",2,"2",44773305,NA,NA,163.47,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_12771",2,"2",44810386,NA,NA,164.70,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_43408",2,"2",44944594,NA,NA,164.70,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_12509",2,"2",45147157,NA,NA,165.43,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_42570",2,"2",45147640,NA,NA,165.43,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_14981",2,"2",45458650,NA,NA,168.41,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c1_4826",2,"2",45458875,NA,NA,168.42,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_4847",2,"2",45616677,NA,NA,168.43,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_15018",2,"2",45618297,NA,NA,170.53,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c1_4849",2,"2",45618958,NA,NA,170.88,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_15041",2,"2",45652545,NA,NA,172.61,2,3,0,0,1,1,1,1,0,1
     "solcap_snp_c2_15042",2,"2",45652553,NA,NA,175.68,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_15046",2,"2",45652811,NA,NA,175.68,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_15047",2,"2",45652877,NA,NA,176.03,1,1,0,1,0,0,0,1,0,0
     "solcap_snp_c2_15048",2,"2",45652958,NA,NA,176.28,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_15065",2,"2",45694316,NA,NA,176.45,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c1_4860",2,"2",45695631,NA,NA,176.60,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_15066",2,"2",45695637,NA,NA,176.76,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_4873",2,"2",45744372,NA,NA,176.88,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_4881",2,"2",45756458,NA,NA,176.88,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_7873",2,"2",46195290,NA,NA,177.44,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_7872",2,"2",46195303,NA,NA,178.19,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_7867",2,"2",46196437,NA,NA,179.89,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c1_7848",2,"2",46291502,NA,NA,179.89,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c1_7834",2,"2",46384191,NA,NA,181.66,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_24869",2,"2",46387342,NA,NA,182.20,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_47211",2,"2",46940997,NA,NA,182.20,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_47197",2,"2",47137310,NA,NA,184.36,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_47199",2,"2",47137738,NA,NA,184.36,3,3,1,0,1,1,1,0,1,1
     "solcap_snp_c2_47200",2,"2",47137863,NA,NA,187.30,2,0,0,0,1,1,0,0,0,0
     "solcap_snp_c2_47201",2,"2",47141179,NA,NA,188.15,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_10607",2,"2",47182635,NA,NA,189.23,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_10593",2,"2",47302272,NA,NA,193.87,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_35686",2,"2",47323948,NA,NA,193.87,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35687",2,"2",47324096,NA,NA,193.87,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35690",2,"2",47324235,NA,NA,193.87,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_35691",2,"2",47324287,NA,NA,194.70,0,3,0,0,0,0,1,1,0,1
     "solcap_snp_c2_35692",2,"2",47325069,NA,NA,194.70,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_35697",2,"2",47325513,NA,NA,195.66,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_35700",2,"2",47326506,NA,NA,196.63,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_35701",2,"2",47327334,NA,NA,196.63,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_35702",2,"2",47327423,NA,NA,196.63,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_35706",2,"2",47327566,NA,NA,197.84,1,1,0,1,0,0,0,1,0,0
     "solcap_snp_c1_11458",2,"2",47625835,NA,NA,200.53,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c1_11459",2,"2",47625847,NA,NA,201.80,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_38551",2,"2",47627255,NA,NA,201.81,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_38552",2,"2",47627384,NA,NA,201.81,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_38553",2,"2",47627420,NA,NA,201.95,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_38555",2,"2",47627603,NA,NA,202.72,1,2,0,1,0,0,1,0,0,1
     "solcap_snp_c1_5931",2,"2",48498256,NA,NA,206.31,2,3,1,1,0,0,1,0,1,1
     "solcap_snp_c1_5895",2,"2",48565009,NA,NA,206.32,1,1,1,0,0,0,0,0,1,0
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.001 0.005
     Iter: 2 0.024 0.000 0.001 0.007
     Iter: 3 0.028 0.000 0.000 0.008
     Iter: 4 0.030 0.000 0.000 0.008
     Iter: 5 0.030 0.000 0.000 0.008
     Iter: 6 0.031 0.000 0.000 0.008
     Iter: 7 0.031 0.000 0.000 0.008
     Iter: 8 0.031 0.000 0.000 0.008
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
    
     Linkage group 1 ...
     INFO: Going singlemode. Using one CPU for calculation.
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
    
     Linkage group 1 ...
     trying URL 'https://github.com/mmollina/MAPpoly_vignettes/raw/master/data/sweet_sample_ch3.vcf.gz'
     Content type 'text/plain; charset=utf-8' length 1416917 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading data...
     Scanning file to determine attributes.
     File attributes:
     meta lines: 8
     header_line: 9
     variant count: 200
     column count: 326
    
     Meta line 8 read in.
     All meta lines processed.
     gt matrix initialized.
     Character matrix gt created.
     Character matrix gt rows: 200
     Character matrix gt cols: 326
     skip: 0
     nrows: 200
     row_num: 0
    
     Processed variant: 200
     All variants processed
     Processing genotypes...Done!
     Selected ploidy: 6
     Done!
     Read the following data:
     Ploidy level: 6
     No. individuals: 315
     No. markers: 167
     No. informative markers: 167 (100%)
     This dataset contains chromosome information.
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     This is an object of class 'mappoly.data'
     Ploidy level: 6
     No. individuals: 315
     No. markers: 164
     Missing data under prob. threshold: 6.01%
     Redundant markers: 1.8%
    
     No. markers per chromosome: not available
     ----------
     No. of markers per dosage combination in both parents:
     P1 P2 freq
     0 1 50
     0 2 8
     0 3 4
     0 4 1
     1 0 26
     1 1 12
     1 2 9
     1 3 4
     1 4 1
     2 0 3
     2 1 10
     2 2 7
     2 3 7
     2 4 4
     3 0 3
     3 1 3
     3 2 7
     3 3 1
     4 0 1
     4 1 2
     4 2 1
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/SolCAP_dosage'
     Content type 'text/plain; charset=utf-8' length 1445956 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 160
     No. markers: 4017
     No. informative markers: 4017 (100%)
     ...
    
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/hexa_sample'
     Content type 'text/plain; charset=utf-8' length 142904 bytes (139 KB)
     ==================================================
     downloaded 139 KB
    
     Reading the following data:
     Ploidy level: 6
     No. individuals: 50
     No. markers: 100
     No. informative markers: 71 (71%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/tetra_solcap.csv'
     Content type 'text/plain; charset=utf-8' length 1448564 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 160
     No. markers: 4017
     No. informative markers: 4017 (100%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Done with filtering.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/fitpoly.dat'
     Content type 'text/plain; charset=utf-8' length 3563386 bytes (3.4 MB)
     ==================================================
     downloaded 3.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 150
     No. markers: 145
     No. informative markers: 138 (95.2%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     This is an object of class 'mappoly.data'
     Ploidy level: 4
     No. individuals: 150
     No. markers: 138
     Missing data: 3.89%
    
     No. markers per chromosome: not available
     ----------
     No. of markers per dosage combination in both parents:
     P1 P2 freq
     0 1 18
     0 2 24
     1 0 18
     1 1 19
     1 2 10
     1 3 3
     2 0 13
     2 1 6
     2 2 15
     2 3 2
     3 1 1
     3 2 5
     3 3 2
     3 4 1
     4 2 1
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007
     Iter: 1 0.031 0.000 0.000 0.008
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 20
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.002 0.006 0.006 0.007 0.006 0.011 0.008 0.004 0.003 0.001 0.004 0.001 0.003 0.007 0.009 0.009 0.000
     Iter: 2 0.024 0.000 0.001 0.007 0.007 0.009 0.006 0.014 0.010 0.004 0.003 0.001 0.004 0.001 0.004 0.009 0.013 0.016 0.000
     Iter: 3 0.028 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.001 0.004 0.009 0.016 0.020 0.000
     Iter: 4 0.029 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.004 0.008 0.018 0.024 0.000
     Iter: 5 0.030 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.008 0.020 0.027 0.000
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.007 0.021 0.029 0.000
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.006 0.021 0.031 0.000
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.005 0.022 0.032 0.000
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.004 0.022 0.033 0.000
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.004 0.022 0.034 0.000
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.035 0.000
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.035 0.000
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.036 0.000
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.036 0.000
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.001 0.024 0.037 0.000
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.001 0.024 0.037 0.000
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.037 0.000
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.037 0.000
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.038 0.000
     Iter: 23 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.038 0.000
     INFO: Going singlemode. Using one CPU for calculation.
     2 submaps found ...
     adding block 2 of 2
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
    
     M_1
     ----------------------------------
     dosage P1: 1
     dosage P2: 2
     ----
     dosage distribution
     0 1 2 3 mis
     23 120 126 31 0
     ----
     expected polysomic segregation
     0 1 2 3 4 5 6
     0.1 0.4 0.4 0.1 0.0 0.0 0.0
     ----------------------------------
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.017 0.010
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.029 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010
     Iter: 1 0.030 0.000 0.000 0.007 0.007 0.009 0.006 0.017 0.010
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.006 0.006 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.014
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.012
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.010
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.010
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.009
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.009
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 23 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 24 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Updating map 1
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 127 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test-cahe_twopts.R:8:3): compute genotype counts correctly ───────────
     Error in `get_cache_two_pts_from_web(ploidy = 4)`: Cache file not found. Try to use get.from.web = FALSE
     Backtrace:
     ▆
     1. └─mappoly::get_cache_two_pts_from_web(ploidy = 4) at test-cahe_twopts.R:8:2
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 127 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.3.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [83s/380s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > if(requireNamespace("testthat", quietly = TRUE)){
     + library(testthat)
     + library(mappoly)
     + test_check("mappoly")
     + }
     =====================================================
     MAPpoly Package [Version 0.3.02022-01-11 09:22:41 UTC]
     More information: https://github.com/mmollina/MAPpoly
     =====================================================
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     INFO: Going singlemode. Using one CPU.
     Stress: 0.30318
     Mean Nearest Neighbour Fit: 6.18154INFO: Using 2 CPUs for calculation.
     INFO: Done with 2701 pairs of markers
     INFO: Calculation took: 10.57 seconds
     INFO: Using 2 CPUs for calculation.
     INFO: Done with 2701 pairs of markers
     INFO: Calculation took: 11.56 seconds
     Going RcppParallel mode.
     ...
     Done with pairwise computation.
     ~~~~~~~
     Reorganizing results
     ...
     Caching the following dosage combination:
     P.k P.k+1 Q.k Q.k+1
     Conf.1 3 0 2 1
     Conf.2 3 3 2 2
     Conf.3 3 4 2 3
     Conf.4 4 0 3 1
     Conf.5 4 3 3 2
     Conf.6 4 4 3 3
     INFO: Going singlemode. Using one Core/CPU/PC for calculation.
     INFO: Done with 6 phase configurations
     INFO: Calculation took: 0.611 seconds
     This is an object of class 'cache.info'
     -----------------------------------------------------
     Ploidy level: 4
     No. marker combinations: 625
     -----------------------------------------------------
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
     Ploidy level:4
     Number of individuals:160
     ..................................................
     ..................................................
     ..................................................
     ..........
     Ploidy level:4
     Number of individuals:160
     ..................................................
     ..................................................
     ..................................................
     ..........
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     This is an object of class 'mappoly.map'
     Ploidy level: 4
     No. individuals: 160
     No. markers: 5
     No. linkage phases: 1
    
     ---------------------------------------------
     Linkage phase configuration: 1
     log-likelihood: -123.7037
     LOD: 0
    
     a b c d e f g h
     solcap_snp_c2_4408 o o o o o o o | 0.0
     solcap_snp_c2_21332 o o o | o o | | 0.7
     solcap_snp_c2_21314 o o o o o o o | 0.8
     solcap_snp_c2_4437 o o o | o o | | 0.9
     solcap_snp_c2_6674 | | | | | | | o 0.9
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     Number of markers: 5
     4 markers...
     • Trying sequence: 1 2 3 4 :
     1 phase(s): .
     5/5:(100%) 7: 1 ph (1/1) -- tail: 4 |||| |||•
     Markers in the initial sequence: 5
     Mapped markers : 5 (100%)
     Number of markers: 5
     4 markers...
     • Trying sequence: 1 2 3 4 :
     1 phase(s): .
     5/5:(100%) 7: 1 ph (1/1) -- tail: 4 |||| |||•
     Markers in the initial sequence: 5
     Mapped markers : 5 (100%)
     Ploidy level: 4
     Rec. Frac. Limit: 0.5
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.019 0.007 0.012 0.007
     Iter: 2 0.028 0.006 0.015 0.008
     Iter: 3 0.032 0.005 0.016 0.009
     Iter: 4 0.034 0.005 0.017 0.010
     Iter: 5 0.036 0.004 0.017 0.011
     Iter: 6 0.036 0.004 0.017 0.011
     Iter: 7 0.037 0.003 0.017 0.012
     Iter: 8 0.037 0.003 0.017 0.013
     Iter: 9 0.037 0.003 0.016 0.013
     Iter: 10 0.037 0.002 0.016 0.014
     Iter: 11 0.037 0.002 0.016 0.014
     Iter: 12 0.037 0.002 0.016 0.014
     Iter: 13 0.037 0.002 0.016 0.015
     Iter: 14 0.038 0.002 0.016 0.015
     Iter: 15 0.038 0.002 0.016 0.015
     Iter: 16 0.038 0.002 0.016 0.015
     Iter: 17 0.038 0.002 0.016 0.016
     Iter: 18 0.038 0.002 0.016 0.016
     Iter: 19 0.038 0.002 0.016 0.016
     Iter: 20 0.038 0.002 0.016 0.016
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.001 0.005
     Iter: 2 0.024 0.000 0.001 0.007
     Iter: 3 0.028 0.000 0.000 0.008
     Iter: 4 0.030 0.000 0.000 0.008
     Iter: 5 0.030 0.000 0.000 0.008
     Iter: 6 0.031 0.000 0.000 0.008
     Iter: 7 0.031 0.000 0.000 0.008
     Iter: 8 0.031 0.000 0.000 0.008
     "Marker Name","LG","Ref Chrom","Ref Position","Ref Allele","Alt Allele","Map Position","Dose in P1","Dose in P2","ph.P.a","ph.P.b","ph.P.c","ph.P.d","ph.Q.e","ph.Q.f","ph.Q.g","ph.Q.h"
     "solcap_snp_c2_51460",1,"1", 151147,NA,NA, 0.00,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_36608",1,"1", 251032,NA,NA, 3.20,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_36615",1,"1", 252977,NA,NA, 3.21,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_36658",1,"1", 269300,NA,NA, 3.22,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_10930",1,"1", 309242,NA,NA, 3.92,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_36629",1,"1", 433701,NA,NA, 4.62,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_10915",1,"1", 481195,NA,NA, 5.56,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c1_10918",1,"1", 496966,NA,NA, 6.18,1,2,0,1,0,0,0,1,1,0
     "solcap_snp_c2_36650",1,"1", 507322,NA,NA, 7.67,1,2,0,1,0,0,0,1,1,0
     "solcap_snp_c2_36643",1,"1", 508489,NA,NA, 8.71,2,2,0,0,1,1,1,0,0,1
     "solcap_snp_c2_36660",1,"1", 534726,NA,NA, 9.12,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_36664",1,"1", 535354,NA,NA, 9.40,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c2_36686",1,"1", 601257,NA,NA, 9.41,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_54803",1,"1", 811809,NA,NA, 9.92,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c2_54800",1,"1", 813297,NA,NA, 9.93,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c2_54797",1,"1", 817305,NA,NA, 10.46,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_56714",1,"1", 931273,NA,NA, 10.47,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_6865",1,"1", 1513756,NA,NA, 12.72,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_6683",1,"1", 1828357,NA,NA, 15.31,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c1_2417",1,"1", 1838764,NA,NA, 15.32,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_6713",1,"1", 2068205,NA,NA, 15.58,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21098",1,"1", 2589396,NA,NA, 17.78,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21100",1,"1", 2591241,NA,NA, 19.16,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21233",1,"1", 2956217,NA,NA, 21.10,2,1,0,1,0,1,0,1,0,0
     "solcap_snp_c1_6704",1,"1", 2957498,NA,NA, 21.20,1,2,0,0,1,0,0,1,1,0
     "solcap_snp_c2_21236",1,"1", 2958510,NA,NA, 22.07,3,2,0,1,1,1,0,1,1,0
     "solcap_snp_c1_6123",1,"1", 3296081,NA,NA, 25.79,2,2,1,0,1,0,0,1,1,0
     "solcap_snp_c1_6114",1,"1", 3693321,NA,NA, 25.97,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_6109",1,"1", 3716835,NA,NA, 26.67,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_51791",1,"1", 4309511,NA,NA, 31.96,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_49938",1,"1", 4597936,NA,NA, 31.97,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_56125",1,"1", 5291666,NA,NA, 34.56,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_45058",1,"1", 5347412,NA,NA, 35.15,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_45071",1,"1", 5386765,NA,NA, 36.19,3,1,1,1,0,1,1,0,0,0
     "solcap_snp_c2_45064",1,"1", 5502148,NA,NA, 36.69,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_13289",1,"1", 5504921,NA,NA, 36.70,2,3,1,0,0,1,0,1,1,1
     "solcap_snp_c1_13293",1,"1", 5505413,NA,NA, 36.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_27877",1,"1", 6071274,NA,NA, 38.46,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_27878",1,"1", 6071298,NA,NA, 38.47,1,1,0,0,0,1,1,0,0,0
     "solcap_snp_c2_27882",1,"1", 6071676,NA,NA, 38.73,3,1,0,1,1,1,1,0,0,0
     "solcap_snp_c2_27884",1,"1", 6071778,NA,NA, 38.74,3,1,0,1,1,1,1,0,0,0
     "solcap_snp_c2_27885",1,"1", 6071817,NA,NA, 39.13,0,3,0,0,0,0,0,1,1,1
     "solcap_snp_c2_27903",1,"1", 6295642,NA,NA, 40.12,2,3,0,1,0,1,0,1,1,1
     "solcap_snp_c2_27918",1,"1", 6587772,NA,NA, 40.56,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_48155",1,"1", 7165330,NA,NA, 41.98,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_48154",1,"1", 7165840,NA,NA, 42.33,2,3,0,1,0,1,0,1,1,1
     "solcap_snp_c2_50011",1,"1", 7446981,NA,NA, 42.34,2,3,1,0,1,0,0,1,1,1
     "solcap_snp_c1_16312",1,"1", 7641280,NA,NA, 43.72,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52709",1,"1", 8645609,NA,NA, 44.63,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52712",1,"1", 8645693,NA,NA, 44.64,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52705",1,"1", 8653609,NA,NA, 45.12,2,1,0,1,0,1,0,1,0,0
     "solcap_snp_c2_48549",1,"1",10570936,NA,NA, 52.54,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_48563",1,"1",10573573,NA,NA, 52.55,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_55639",1,"1",11235975,NA,NA, 52.56,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_56356",1,"1",11737675,NA,NA, 52.57,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_56359",1,"1",11742617,NA,NA, 52.81,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_57284",1,"1",11774518,NA,NA, 53.18,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_45637",1,"1",12022263,NA,NA, 53.55,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_55008",1,"1",12994177,NA,NA, 57.69,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_53521",1,"1",13266849,NA,NA, 57.70,2,2,0,1,0,1,0,0,1,1
     "solcap_snp_c2_43984",1,"1",13369857,NA,NA, 57.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_12938",1,"1",13392343,NA,NA, 58.21,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_43970",1,"1",13545289,NA,NA, 59.61,1,1,0,1,0,0,0,0,1,0
     "solcap_snp_c2_43973",1,"1",13547044,NA,NA, 60.07,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c1_8908",1,"1",13656016,NA,NA, 60.91,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_54355",1,"1",13740719,NA,NA, 63.95,2,2,1,0,1,0,0,1,0,1
     "solcap_snp_c2_54353",1,"1",13747285,NA,NA, 66.18,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_49867",1,"1",16399117,NA,NA, 66.19,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_48568",1,"1",17370536,NA,NA, 66.20,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c1_8593",1,"1",17664021,NA,NA, 66.21,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_53759",1,"1",18753871,NA,NA, 66.22,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_56842",1,"1",18925684,NA,NA, 66.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c1_16421",1,"1",18926984,NA,NA, 66.59,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_14663",1,"1",19664067,NA,NA, 66.71,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_49326",1,"1",20549734,NA,NA, 68.28,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c1_5477",1,"1",23657080,NA,NA, 68.29,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_43643",1,"1",29180891,NA,NA, 69.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_22549",1,"1",29678234,NA,NA, 69.24,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_22546",1,"1",29679750,NA,NA, 69.25,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_7136",1,"1",30125081,NA,NA, 69.59,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_11066",1,"1",32091982,NA,NA, 69.93,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_9378",1,"1",34098178,NA,NA, 70.23,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_27683",1,"1",37067385,NA,NA, 70.27,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_27677",1,"1",37071329,NA,NA, 70.59,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42829",1,"1",38478335,NA,NA, 71.26,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_15714",1,"1",39325633,NA,NA, 71.51,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_45395",1,"1",39529256,NA,NA, 71.81,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_49732",1,"1",41859322,NA,NA, 73.88,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_14648",1,"1",41947283,NA,NA, 73.89,4,1,1,1,1,1,0,1,0,0
     "solcap_snp_c1_14654",1,"1",41979022,NA,NA, 73.90,4,1,1,1,1,1,0,1,0,0
     "solcap_snp_c2_32111",1,"1",42197632,NA,NA, 73.91,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_32112",1,"1",42197668,NA,NA, 74.94,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_50028",1,"1",43180567,NA,NA, 76.56,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_50023",1,"1",43196126,NA,NA, 77.18,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_49042",1,"1",43330828,NA,NA, 78.19,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_16169",1,"1",44194024,NA,NA, 81.89,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_14248",1,"1",44696488,NA,NA, 81.90,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c1_14249",1,"1",44696500,NA,NA, 82.40,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_14259",1,"1",44700858,NA,NA, 82.41,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_14261",1,"1",44702300,NA,NA, 82.42,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c2_53708",1,"1",44890351,NA,NA, 83.08,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_40131",1,"1",45751390,NA,NA, 83.09,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_54811",1,"1",46271054,NA,NA, 83.10,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_15855",1,"1",46323471,NA,NA, 83.11,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_35220",1,"1",47299682,NA,NA, 83.12,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_35218",1,"1",47300005,NA,NA, 83.13,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_35601",1,"1",50791085,NA,NA, 85.14,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_694",1,"1",51290105,NA,NA, 85.74,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_686",1,"1",51324458,NA,NA, 85.80,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c2_57898",1,"1",51736618,NA,NA, 85.81,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_880",1,"1",54480981,NA,NA, 86.14,4,3,1,1,1,1,1,1,1,0
     "solcap_snp_c2_55113",1,"1",54580381,NA,NA, 86.15,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_2874",1,"1",55163851,NA,NA, 86.16,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_55621",1,"1",55427211,NA,NA, 86.17,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_55618",1,"1",55427602,NA,NA, 86.35,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c1_14633",1,"1",57931788,NA,NA, 91.38,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_2721",1,"1",58197548,NA,NA, 91.39,1,1,0,0,0,1,1,0,0,0
     "solcap_snp_c2_2653",1,"1",58737622,NA,NA, 92.93,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_2591",1,"1",58985511,NA,NA, 93.92,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_13430",1,"1",59363361,NA,NA, 95.09,1,3,0,1,0,0,1,0,1,1
     "solcap_snp_c2_46523",1,"1",59973949,NA,NA, 95.82,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_46521",1,"1",59974282,NA,NA, 95.83,2,3,1,0,1,0,1,1,1,0
     "solcap_snp_c2_46520",1,"1",59974316,NA,NA, 95.84,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_53347",1,"1",60026944,NA,NA, 96.47,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_35511",1,"1",60433785,NA,NA, 96.48,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35518",1,"1",60512480,NA,NA, 96.49,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35520",1,"1",60513199,NA,NA, 96.50,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35536",1,"1",60515867,NA,NA, 97.95,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_35537",1,"1",60516874,NA,NA, 97.96,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_43926",1,"1",60887837,NA,NA, 98.27,2,2,0,1,0,1,1,0,0,1
     "solcap_snp_c2_56267",1,"1",60919490,NA,NA, 99.07,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c2_20798",1,"1",60951573,NA,NA, 99.08,2,2,1,1,0,0,0,1,1,0
     "solcap_snp_c2_20799",1,"1",60951606,NA,NA, 99.29,2,2,0,0,1,1,1,0,0,1
     "solcap_snp_c2_20803",1,"1",60987155,NA,NA, 99.52,1,2,0,0,0,1,1,0,0,1
     "solcap_snp_c2_20890",1,"1",61310805,NA,NA,101.03,3,3,1,1,1,0,1,1,1,0
     "solcap_snp_c2_50903",1,"1",61774492,NA,NA,101.77,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_38428",1,"1",62058660,NA,NA,102.74,1,1,0,0,0,1,0,0,0,1
     "solcap_snp_c2_38406",1,"1",62144916,NA,NA,103.16,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_38404",1,"1",62148178,NA,NA,103.17,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c2_38448",1,"1",62289476,NA,NA,104.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_12106",1,"1",62802674,NA,NA,106.27,1,3,0,0,0,1,1,0,1,1
     "solcap_snp_c2_41337",1,"1",62930793,NA,NA,106.84,1,3,0,0,0,1,1,0,1,1
     "solcap_snp_c2_32359",1,"1",63208419,NA,NA,108.73,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_9679",1,"1",63338027,NA,NA,110.16,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_12057",1,"1",63596472,NA,NA,111.12,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_13686",1,"1",64120988,NA,NA,113.01,2,3,0,0,1,1,1,0,1,1
     "solcap_snp_c2_46195",1,"1",64259858,NA,NA,113.66,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_13751",1,"1",64614114,NA,NA,113.95,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_4415",1,"1",65036984,NA,NA,116.70,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c2_13675",1,"1",65036993,NA,NA,116.94,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_13676",1,"1",65054301,NA,NA,116.95,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_13671",1,"1",65062849,NA,NA,116.96,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c2_13653",1,"1",65270150,NA,NA,117.37,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c2_13650",1,"1",65277543,NA,NA,117.38,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_4744",1,"1",65472678,NA,NA,118.20,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_14467",1,"1",65694581,NA,NA,118.81,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14470",1,"1",65697018,NA,NA,118.83,2,4,1,0,0,1,1,1,1,1
     "solcap_snp_c1_4706",1,"1",65780052,NA,NA,119.64,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14487",1,"1",65780861,NA,NA,119.65,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14489",1,"1",65781907,NA,NA,119.66,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14491",1,"1",65782311,NA,NA,119.69,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_14492",1,"1",65782372,NA,NA,119.70,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_14493",1,"1",65782860,NA,NA,120.27,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_4745",1,"1",66094082,NA,NA,123.09,2,2,1,0,0,1,1,1,0,0
     "solcap_snp_c1_4748",1,"1",66259325,NA,NA,123.10,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14589",1,"1",66283156,NA,NA,123.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_37564",1,"1",66307265,NA,NA,123.24,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_14595",1,"1",66307870,NA,NA,123.66,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_37566",1,"1",66307870,NA,NA,123.67,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_4752",1,"1",66336597,NA,NA,124.20,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14608",1,"1",66349497,NA,NA,124.47,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_4757",1,"1",66354237,NA,NA,124.83,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_4763",1,"1",66376115,NA,NA,124.84,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c1_5150",1,"1",66675718,NA,NA,127.51,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_58099",1,"1",66845540,NA,NA,127.69,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_5145",1,"1",66904071,NA,NA,127.70,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_20569",1,"1",67013419,NA,NA,132.36,3,1,1,1,1,0,0,0,1,0
     "solcap_snp_c2_20501",1,"1",67211402,NA,NA,136.36,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c2_20502",1,"1",67221811,NA,NA,137.02,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c2_20505",1,"1",67223365,NA,NA,138.09,3,2,0,1,1,1,0,0,1,1
     "solcap_snp_c2_20506",1,"1",67223618,NA,NA,139.27,3,3,0,1,1,1,1,0,1,1
     "solcap_snp_c2_20508",1,"1",67224636,NA,NA,139.92,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_20513",1,"1",67277917,NA,NA,140.32,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_20521",1,"1",67293276,NA,NA,140.85,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_20522",1,"1",67294203,NA,NA,141.34,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_6501",1,"1",67459562,NA,NA,142.30,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_6518",1,"1",67605601,NA,NA,142.31,2,2,0,1,0,1,0,0,1,1
     "solcap_snp_c2_13766",1,"1",67896690,NA,NA,142.32,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_52492",1,"1",67969508,NA,NA,143.43,3,2,1,1,0,1,0,0,1,1
     "solcap_snp_c2_52484",1,"1",68069976,NA,NA,144.07,1,2,0,0,1,0,1,1,0,0
     "solcap_snp_c2_49451",1,"1",68416146,NA,NA,145.42,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_14044",1,"1",68529607,NA,NA,146.51,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_51055",1,"1",68950490,NA,NA,147.79,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c1_11769",1,"1",69200071,NA,NA,148.59,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_39834",1,"1",69381232,NA,NA,149.22,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_17592",1,"1",69809943,NA,NA,150.28,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_17529",1,"1",69902111,NA,NA,150.29,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_17531",1,"1",70016341,NA,NA,151.13,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_17537",1,"1",70097616,NA,NA,151.14,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c1_15579",1,"1",70341165,NA,NA,151.68,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c1_15580",1,"1",70341195,NA,NA,151.91,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c2_53380",1,"1",70371798,NA,NA,152.63,3,2,0,1,1,1,0,0,1,1
     "solcap_snp_c2_53381",1,"1",70372029,NA,NA,153.40,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c2_17191",1,"1",70474751,NA,NA,153.41,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_5657",1,"1",70560319,NA,NA,154.13,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c1_5656",1,"1",70562884,NA,NA,154.14,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_5653",1,"1",70697401,NA,NA,154.15,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_3860",1,"1",71009488,NA,NA,155.37,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c1_3863",1,"1",71009686,NA,NA,156.05,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_12076",1,"1",71090664,NA,NA,156.55,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_3867",1,"1",71239298,NA,NA,157.43,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_3868",1,"1",71239559,NA,NA,157.65,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_3876",1,"1",71278255,NA,NA,158.09,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_12106",1,"1",71298195,NA,NA,158.31,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_3894",1,"1",71421320,NA,NA,158.74,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_12126",1,"1",71450592,NA,NA,159.39,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_12216",1,"1",72051429,NA,NA,160.94,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_12217",1,"1",72051456,NA,NA,160.97,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_3848",1,"1",72108418,NA,NA,160.98,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_3851",1,"1",72112064,NA,NA,160.99,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_9565",1,"1",72320561,NA,NA,162.31,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_9566",1,"1",72320582,NA,NA,162.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_9573",1,"1",72504567,NA,NA,162.33,2,2,0,1,1,0,0,0,1,1
     "solcap_snp_c2_31820",1,"1",72528671,NA,NA,163.44,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_31821",1,"1",72531263,NA,NA,163.45,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_9583",1,"1",72540600,NA,NA,163.66,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c1_9587",1,"1",72541075,NA,NA,163.67,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_14274",1,"1",74061621,NA,NA,166.55,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c1_4617",1,"1",74355434,NA,NA,168.09,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_14365",1,"1",74688262,NA,NA,168.11,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14366",1,"1",74688318,NA,NA,168.54,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c1_14931",1,"1",75007319,NA,NA,168.55,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_16369",1,"1",75164058,NA,NA,169.98,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c1_5267",1,"1",75333553,NA,NA,170.01,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_5281",1,"1",75441912,NA,NA,170.02,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_5286",1,"1",75477570,NA,NA,170.90,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_16424",1,"1",75478258,NA,NA,171.43,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_16425",1,"1",75485276,NA,NA,171.73,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_16466",1,"1",75749019,NA,NA,171.74,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c1_5346",1,"1",75789912,NA,NA,172.18,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_16435",1,"1",76304406,NA,NA,172.61,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c2_2509",1,"1",76406745,NA,NA,172.62,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_2291",1,"1",76480645,NA,NA,173.91,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_641",1,"1",76511147,NA,NA,173.93,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_2420",1,"1",76953005,NA,NA,175.04,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_2423",1,"1",76958677,NA,NA,175.41,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_2424",1,"1",76960116,NA,NA,176.33,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_2427",1,"1",76960344,NA,NA,177.73,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c2_2450",1,"1",77056087,NA,NA,177.96,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2463",1,"1",77190863,NA,NA,178.95,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2464",1,"1",77190891,NA,NA,178.96,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2466",1,"1",77191250,NA,NA,179.19,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2505",1,"1",77350779,NA,NA,179.67,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_2508",1,"1",77353050,NA,NA,180.18,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_758",1,"1",77526728,NA,NA,180.52,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_2201",1,"1",77738922,NA,NA,180.88,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_601",1,"1",78168030,NA,NA,182.58,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_607",1,"1",78176086,NA,NA,182.59,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2299",1,"1",78192398,NA,NA,183.05,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_2354",1,"1",78430745,NA,NA,183.73,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_50486",1,"1",78756800,NA,NA,184.18,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50484",1,"1",78757017,NA,NA,184.41,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50483",1,"1",78757327,NA,NA,184.64,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50502",1,"1",78809381,NA,NA,184.88,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c1_15872",1,"1",78928170,NA,NA,185.35,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_7007",1,"1",79083850,NA,NA,189.67,2,2,1,0,1,0,0,1,1,0
     "solcap_snp_c1_2484",1,"1",79157311,NA,NA,193.43,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_7094",1,"1",79187093,NA,NA,193.46,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_7193",1,"1",79391798,NA,NA,193.94,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_7208",1,"1",79456001,NA,NA,197.09,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c1_2519",1,"1",79487369,NA,NA,197.10,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c1_2520",1,"1",79487485,NA,NA,197.40,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_7241",1,"1",79678600,NA,NA,197.59,3,3,1,1,0,1,1,0,1,1
     "solcap_snp_c2_7242",1,"1",79679061,NA,NA,197.60,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_7245",1,"1",79679433,NA,NA,197.96,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_7246",1,"1",79679919,NA,NA,198.32,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c1_2531",1,"1",79711129,NA,NA,198.33,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_7328",1,"1",79955769,NA,NA,199.81,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_6990",1,"1",80077222,NA,NA,200.92,2,3,1,0,0,1,0,1,1,1
     "solcap_snp_c1_2458",1,"1",80121157,NA,NA,200.93,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_7053",1,"1",80228512,NA,NA,202.00,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7055",1,"1",80229751,NA,NA,203.13,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7056",1,"1",80229823,NA,NA,203.59,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_7061",1,"1",80230621,NA,NA,204.94,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7062",1,"1",80230636,NA,NA,204.95,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c1_1853",1,"1",80429124,NA,NA,205.22,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_5091",1,"1",80558977,NA,NA,206.13,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_5077",1,"1",80591992,NA,NA,207.68,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_5078",1,"1",80592039,NA,NA,208.01,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_5039",1,"1",80669402,NA,NA,209.26,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_9727",1,"1",80833354,NA,NA,209.27,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_9726",1,"1",80833555,NA,NA,209.28,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_9722",1,"1",80835882,NA,NA,209.91,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_9988",1,"1",81013079,NA,NA,212.06,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_9925",1,"1",81410356,NA,NA,212.44,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_9892",1,"1",81567397,NA,NA,215.81,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_9864",1,"1",81615881,NA,NA,215.82,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c1_3275",1,"1",81750527,NA,NA,217.23,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_3255",1,"1",81795335,NA,NA,217.88,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c1_3241",1,"1",81924813,NA,NA,219.27,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_3234",1,"1",81927346,NA,NA,219.38,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_47360",1,"1",82220028,NA,NA,221.34,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4896",1,"1",82628961,NA,NA,222.55,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_4799",1,"1",82927941,NA,NA,222.86,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_1638",1,"1",82935846,NA,NA,222.87,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_1653",1,"1",83012188,NA,NA,225.35,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c1_1683",1,"1",83059366,NA,NA,226.88,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4844",1,"1",83060466,NA,NA,227.75,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c2_4845",1,"1",83060720,NA,NA,229.69,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4860",1,"1",83130390,NA,NA,229.71,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_4864",1,"1",83138355,NA,NA,230.11,2,4,0,1,0,1,1,1,1,1
     "solcap_snp_c2_4875",1,"1",83177618,NA,NA,231.71,3,1,1,1,1,0,1,0,0,0
     "solcap_snp_c2_4884",1,"1",83186994,NA,NA,232.67,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_4885",1,"1",83187000,NA,NA,232.90,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_4898",1,"1",83283573,NA,NA,232.91,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4904",1,"1",83416355,NA,NA,234.34,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4907",1,"1",83418574,NA,NA,236.34,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4910",1,"1",83419340,NA,NA,237.80,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_1737",1,"1",83602469,NA,NA,238.45,2,3,0,1,0,1,1,0,1,1
     "solcap_snp_c1_1739",1,"1",83608625,NA,NA,240.68,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_4614",1,"1",83843457,NA,NA,240.69,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_4664",1,"1",84062694,NA,NA,242.21,1,3,0,0,0,1,0,1,1,1
     "solcap_snp_c2_4708",1,"1",84214693,NA,NA,244.20,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_4713",1,"1",84217673,NA,NA,244.21,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_36495",1,"1",84457206,NA,NA,244.46,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_34546",1,"1",84727952,NA,NA,246.10,1,3,0,0,0,1,0,1,1,1
     "solcap_snp_c1_10354",1,"1",84979069,NA,NA,251.03,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_22",1,"1",85243830,NA,NA,251.60,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_24",1,"1",85323495,NA,NA,255.50,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_13385",1,"1",85715515,NA,NA,256.96,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_46448",1,"1",85760106,NA,NA,256.97,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_53075",1,"1",85902499,NA,NA,257.70,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_42943",1,"1",85953353,NA,NA,258.40,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_49917",1,"1",86090288,NA,NA,258.41,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_49911",1,"1",86095463,NA,NA,258.42,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_49910",1,"1",86095890,NA,NA,258.43,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14839",1,"1",86328984,NA,NA,260.84,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14707",1,"1",86355213,NA,NA,260.85,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14708",1,"1",86356234,NA,NA,262.85,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14709",1,"1",86356378,NA,NA,262.86,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_4796",1,"1",86388041,NA,NA,263.11,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14730",1,"1",86441357,NA,NA,266.54,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14733",1,"1",86527670,NA,NA,267.31,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_4799",1,"1",86663770,NA,NA,269.34,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14761",1,"1",86750111,NA,NA,270.26,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14762",1,"1",86750599,NA,NA,270.54,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14763",1,"1",86847560,NA,NA,270.82,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14764",1,"1",86847664,NA,NA,271.20,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14772",1,"1",86877778,NA,NA,271.58,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14779",1,"1",86887803,NA,NA,274.05,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_4803",1,"1",86942483,NA,NA,276.39,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14827",1,"1",87096629,NA,NA,277.06,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14840",1,"1",87161581,NA,NA,278.23,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_14841",1,"1",87161695,NA,NA,279.54,3,3,1,0,1,1,0,1,1,1
     "solcap_snp_c2_14848",1,"1",87196823,NA,NA,280.06,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c2_37836",1,"1",87392825,NA,NA,282.11,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_37820",1,"1",87463711,NA,NA,282.12,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_11288",1,"1",87558384,NA,NA,282.13,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_11308",1,"1",87663528,NA,NA,287.31,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_37850",1,"1",87731594,NA,NA,287.32,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_37816",1,"1",87746020,NA,NA,288.43,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_9428",1,"1",87944667,NA,NA,298.18,3,1,1,1,1,0,0,1,0,0
     "solcap_snp_c1_9430",1,"1",87965033,NA,NA,302.34,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_22105",1,"1",88057376,NA,NA,306.51,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_9413",1,"1",88294049,NA,NA,309.12,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_9406",1,"1",88347489,NA,NA,309.94,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_30963",1,"1",88362769,NA,NA,313.20,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_30961",1,"1",88389459,NA,NA,313.21,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_9397",1,"1",88409394,NA,NA,314.43,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_9392",1,"1",88434818,NA,NA,314.44,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_30958",1,"1",88451845,NA,NA,316.36,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_30956",1,"1",88452032,NA,NA,316.37,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_30955",1,"1",88452236,NA,NA,316.38,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_1504",2,"2", 4479289,NA,NA, 0.00,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_4344",2,"2", 4884993,NA,NA, 0.49,0,3,0,0,0,0,1,1,1,0
     "solcap_snp_c2_4354",2,"2", 5159401,NA,NA, 0.65,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_48725",2,"2", 5510874,NA,NA, 0.65,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_3750",2,"2", 6090174,NA,NA, 1.63,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_11591",2,"2", 6647886,NA,NA, 2.61,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_3747",2,"2", 7050814,NA,NA, 2.82,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_4515",2,"2", 8246308,NA,NA, 3.03,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_14690",2,"2", 8398966,NA,NA, 3.03,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_14648",2,"2", 8799627,NA,NA, 3.47,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c1_4792",2,"2", 8802985,NA,NA, 4.42,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_14645",2,"2", 9338437,NA,NA, 5.05,2,0,0,0,1,1,0,0,0,0
     "solcap_snp_c2_730",2,"2",12188889,NA,NA, 5.70,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_41887",2,"2",15292858,NA,NA, 6.44,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_47096",2,"2",16846846,NA,NA, 8.89,0,3,0,0,0,0,0,1,1,1
     "solcap_snp_c2_17387",2,"2",20193366,NA,NA, 9.64,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_17427",2,"2",20681191,NA,NA, 11.77,3,0,1,1,1,0,0,0,0,0
     "solcap_snp_c2_17428",2,"2",20681220,NA,NA, 12.45,1,3,0,0,0,1,1,1,0,1
     "solcap_snp_c1_5739",2,"2",20681710,NA,NA, 13.09,3,0,1,1,1,0,0,0,0,0
     "solcap_snp_c1_11344",2,"2",21725517,NA,NA, 18.09,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_38022",2,"2",22006999,NA,NA, 18.88,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_32421",2,"2",22621554,NA,NA, 21.89,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_9719",2,"2",22749359,NA,NA, 22.13,0,3,0,0,0,0,1,1,0,1
     "solcap_snp_c2_39705",2,"2",23426100,NA,NA, 25.47,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_39677",2,"2",23550342,NA,NA, 26.12,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_37256",2,"2",23737215,NA,NA, 27.42,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_11122",2,"2",23799802,NA,NA, 27.43,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_33996",2,"2",24149138,NA,NA, 30.38,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_53818",2,"2",24744880,NA,NA, 30.38,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_15402",2,"2",24899862,NA,NA, 31.49,4,1,1,1,1,1,0,0,1,0
     "solcap_snp_c2_52630",2,"2",24910552,NA,NA, 34.48,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_21752",2,"2",25050163,NA,NA, 36.52,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_6841",2,"2",25051854,NA,NA, 37.05,4,1,1,1,1,1,0,0,1,0
     "solcap_snp_c2_21746",2,"2",25072703,NA,NA, 37.40,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_21722",2,"2",25322160,NA,NA, 38.34,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_21717",2,"2",25423184,NA,NA, 40.23,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c1_9369",2,"2",26798985,NA,NA, 42.18,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_45392",2,"2",27065211,NA,NA, 42.79,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_45307",2,"2",27086772,NA,NA, 43.77,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_45310",2,"2",27088140,NA,NA, 43.93,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_45311",2,"2",27088340,NA,NA, 44.25,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_13459",2,"2",27143875,NA,NA, 45.22,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13465",2,"2",27190187,NA,NA, 45.92,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_12339",2,"2",27411139,NA,NA, 45.94,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_12345",2,"2",27412322,NA,NA, 46.50,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_12305",2,"2",27458950,NA,NA, 46.91,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_12310",2,"2",27553365,NA,NA, 47.61,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_41980",2,"2",27557427,NA,NA, 48.15,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_12330",2,"2",27618598,NA,NA, 48.15,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42059",2,"2",27676633,NA,NA, 48.15,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_38940",2,"2",27856761,NA,NA, 48.63,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_38938",2,"2",27860023,NA,NA, 49.54,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_38936",2,"2",27860101,NA,NA, 49.88,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_11556",2,"2",28039994,NA,NA, 50.06,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_38952",2,"2",28230312,NA,NA, 52.01,4,1,1,1,1,1,0,0,0,1
     "solcap_snp_c2_19692",2,"2",28745987,NA,NA, 54.82,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_5091",2,"2",28830938,NA,NA, 55.63,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_5088",2,"2",28832209,NA,NA, 55.63,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_15749",2,"2",28938673,NA,NA, 56.86,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_48238",2,"2",29093635,NA,NA, 56.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_48237",2,"2",29093750,NA,NA, 56.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_14280",2,"2",29136032,NA,NA, 56.86,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_48195",2,"2",29136966,NA,NA, 58.21,3,1,1,0,1,1,1,0,0,0
     "solcap_snp_c1_14293",2,"2",29163304,NA,NA, 59.03,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_39155",2,"2",29312895,NA,NA, 59.03,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_39135",2,"2",29416066,NA,NA, 61.45,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_51113",2,"2",29665174,NA,NA, 61.69,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13912",2,"2",29883519,NA,NA, 63.21,1,2,0,1,0,0,0,1,0,1
     "solcap_snp_c2_46903",2,"2",29922714,NA,NA, 63.51,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_46904",2,"2",29922763,NA,NA, 63.51,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13929",2,"2",29928927,NA,NA, 63.80,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_46909",2,"2",29929969,NA,NA, 64.06,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_13910",2,"2",29990872,NA,NA, 64.32,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_13911",2,"2",30022458,NA,NA, 64.32,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_46885",2,"2",30044742,NA,NA, 64.33,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_46887",2,"2",30044882,NA,NA, 64.33,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_46898",2,"2",30147247,NA,NA, 64.62,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_7469",2,"2",30364207,NA,NA, 65.87,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_7412",2,"2",30401330,NA,NA, 66.50,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_7430",2,"2",30480570,NA,NA, 67.07,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_23170",2,"2",30785563,NA,NA, 68.54,1,3,0,1,0,0,1,0,1,1
     "solcap_snp_c2_23188",2,"2",31021446,NA,NA, 69.23,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_23192",2,"2",31060240,NA,NA, 70.07,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_54732",2,"2",31205330,NA,NA, 70.53,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_41534",2,"2",31571193,NA,NA, 71.69,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_13236",2,"2",31663185,NA,NA, 71.70,3,1,1,0,1,1,0,1,0,0
     "solcap_snp_c1_13233",2,"2",31714504,NA,NA, 71.70,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_39191",2,"2",32084708,NA,NA, 72.91,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c1_11581",2,"2",32220207,NA,NA, 74.63,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44771",2,"2",32647466,NA,NA, 75.14,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_44774",2,"2",32668501,NA,NA, 75.61,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44776",2,"2",32669850,NA,NA, 75.61,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44778",2,"2",32671297,NA,NA, 75.82,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44768",2,"2",32806437,NA,NA, 76.46,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_44769",2,"2",32820718,NA,NA, 76.70,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_44770",2,"2",32822882,NA,NA, 76.70,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_13051",2,"2",33076397,NA,NA, 76.70,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c1_4192",2,"2",33204619,NA,NA, 78.22,2,1,0,0,1,1,0,1,0,0
     "solcap_snp_c2_51998",2,"2",33270668,NA,NA, 78.76,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_51985",2,"2",33352028,NA,NA, 80.22,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_51990",2,"2",33357450,NA,NA, 80.23,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_48784",2,"2",33668370,NA,NA, 82.72,3,3,1,1,1,0,0,1,1,1
     "solcap_snp_c2_47037",2,"2",33978883,NA,NA, 85.33,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c1_12264",2,"2",34171806,NA,NA, 86.01,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_33141",2,"2",34594739,NA,NA, 88.89,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_33108",2,"2",34739225,NA,NA, 88.90,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_40155",2,"2",35112346,NA,NA, 90.03,2,3,0,0,1,1,1,1,1,0
     "solcap_snp_c2_50570",2,"2",35399177,NA,NA, 91.75,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_50394",2,"2",35549597,NA,NA, 92.94,2,1,1,1,0,0,0,0,0,1
     "solcap_snp_c2_50391",2,"2",35579108,NA,NA, 93.63,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_50412",2,"2",35600542,NA,NA, 93.63,4,3,1,1,1,1,1,1,1,0
     "solcap_snp_c2_50405",2,"2",35657756,NA,NA, 94.17,1,3,0,0,1,0,1,1,1,0
     "solcap_snp_c2_27433",2,"2",35990927,NA,NA, 94.67,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_27437",2,"2",36019472,NA,NA, 94.67,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_17973",2,"2",36229730,NA,NA, 95.07,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_17954",2,"2",36329410,NA,NA, 96.17,2,2,1,0,0,1,1,0,1,0
     "solcap_snp_c2_17938",2,"2",36364347,NA,NA, 96.74,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17937",2,"2",36364435,NA,NA, 96.99,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17935",2,"2",36364609,NA,NA, 97.09,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17932",2,"2",36364767,NA,NA, 97.18,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17930",2,"2",36364901,NA,NA, 97.18,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17926",2,"2",36365501,NA,NA, 97.38,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17925",2,"2",36365552,NA,NA, 97.79,2,2,0,1,1,0,0,1,0,1
     "solcap_snp_c2_17922",2,"2",36374598,NA,NA, 98.62,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17921",2,"2",36375406,NA,NA, 98.62,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17914",2,"2",36422560,NA,NA,100.07,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_17901",2,"2",36454929,NA,NA,101.33,2,1,1,0,0,1,1,0,0,0
     "solcap_snp_c2_17900",2,"2",36455067,NA,NA,101.95,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17899",2,"2",36455154,NA,NA,101.96,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17897",2,"2",36455571,NA,NA,101.96,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_17896",2,"2",36455607,NA,NA,101.96,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17895",2,"2",36455817,NA,NA,103.63,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_17816",2,"2",36728687,NA,NA,103.78,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_17809",2,"2",36799097,NA,NA,103.79,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_5846",2,"2",36959231,NA,NA,104.26,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_5845",2,"2",36959234,NA,NA,105.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_49495",2,"2",37017828,NA,NA,105.32,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c2_42169",2,"2",37438591,NA,NA,105.32,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_42172",2,"2",37439183,NA,NA,105.33,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c1_16170",2,"2",37474563,NA,NA,105.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_55632",2,"2",37474656,NA,NA,105.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_16171",2,"2",37475069,NA,NA,105.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_12373",2,"2",37530401,NA,NA,105.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_12382",2,"2",37654438,NA,NA,105.83,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_42241",2,"2",37676252,NA,NA,106.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35211",2,"2",37831945,NA,NA,106.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_10494",2,"2",37845965,NA,NA,106.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_10492",2,"2",37890758,NA,NA,106.83,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_10491",2,"2",37903554,NA,NA,107.24,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_35165",2,"2",37982943,NA,NA,108.38,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35139",2,"2",38046886,NA,NA,108.38,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_35113",2,"2",38121156,NA,NA,108.80,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_15466",2,"2",38386450,NA,NA,109.46,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53037",2,"2",38688112,NA,NA,109.46,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53036",2,"2",38688195,NA,NA,109.47,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53034",2,"2",38688354,NA,NA,109.47,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53033",2,"2",38688468,NA,NA,109.88,2,1,1,0,0,1,0,1,0,0
     "solcap_snp_c1_11955",2,"2",38837510,NA,NA,112.32,2,1,1,1,0,0,0,1,0,0
     "solcap_snp_c2_40635",2,"2",39073404,NA,NA,113.50,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_40638",2,"2",39073700,NA,NA,115.75,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42132",2,"2",39144989,NA,NA,115.75,1,3,0,0,1,0,1,0,1,1
     "solcap_snp_c2_42133",2,"2",39144999,NA,NA,115.75,1,3,0,0,1,0,1,0,1,1
     "solcap_snp_c2_42126",2,"2",39369111,NA,NA,115.80,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_42127",2,"2",39369213,NA,NA,115.80,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c1_8113",2,"2",39934151,NA,NA,120.10,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_8118",2,"2",39940655,NA,NA,120.12,2,3,0,0,1,1,1,0,1,1
     "solcap_snp_c1_8125",2,"2",39970010,NA,NA,120.19,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_25892",2,"2",40044441,NA,NA,122.61,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_25896",2,"2",40132579,NA,NA,122.66,3,3,1,0,1,1,1,0,1,1
     "solcap_snp_c2_25897",2,"2",40132705,NA,NA,122.66,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_25179",2,"2",40294633,NA,NA,123.40,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_7964",2,"2",40294982,NA,NA,126.16,3,3,1,1,1,0,1,1,0,1
     "solcap_snp_c2_7555",2,"2",41356969,NA,NA,128.16,0,2,0,0,0,0,0,1,1,0
     "solcap_snp_c2_7558",2,"2",41357718,NA,NA,128.59,0,2,0,0,0,0,0,1,1,0
     "solcap_snp_c2_7559",2,"2",41357748,NA,NA,128.59,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_7565",2,"2",41368149,NA,NA,129.00,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c1_2632",2,"2",41745246,NA,NA,130.15,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_2640",2,"2",41814961,NA,NA,130.65,2,3,0,0,1,1,1,1,1,0
     "solcap_snp_c1_2641",2,"2",41814973,NA,NA,131.72,2,1,0,0,1,1,1,0,0,0
     "solcap_snp_c1_2656",2,"2",41911152,NA,NA,133.37,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c1_2574",2,"2",42014614,NA,NA,133.68,2,3,1,1,0,0,0,1,1,1
     "solcap_snp_c2_7401",2,"2",42083055,NA,NA,136.14,3,3,0,1,1,1,1,0,1,1
     "solcap_snp_c2_7422",2,"2",42178610,NA,NA,137.92,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c1_2587",2,"2",42179852,NA,NA,138.59,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_7426",2,"2",42180225,NA,NA,139.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_57421",2,"2",42320846,NA,NA,141.09,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_16540",2,"2",42320852,NA,NA,141.19,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_15746",2,"2",42346419,NA,NA,142.45,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_22939",2,"2",42474531,NA,NA,144.58,2,1,1,1,0,0,0,0,0,1
     "solcap_snp_c1_7346",2,"2",42597250,NA,NA,146.12,2,2,1,1,0,0,1,0,0,1
     "solcap_snp_c2_22853",2,"2",42733575,NA,NA,146.95,3,2,0,1,1,1,0,1,1,0
     "solcap_snp_c1_7325",2,"2",42764357,NA,NA,147.64,1,1,1,0,0,0,0,0,0,1
     "solcap_snp_c2_27216",2,"2",43804789,NA,NA,152.13,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_27372",2,"2",44159308,NA,NA,155.23,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_27270",2,"2",44458161,NA,NA,155.71,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_27269",2,"2",44458317,NA,NA,155.71,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_27271",2,"2",44458644,NA,NA,158.41,2,3,0,0,1,1,1,1,0,1
     "solcap_snp_c1_8490",2,"2",44698531,NA,NA,160.85,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_43350",2,"2",44773146,NA,NA,162.25,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_43348",2,"2",44773305,NA,NA,163.47,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_12771",2,"2",44810386,NA,NA,164.70,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_43408",2,"2",44944594,NA,NA,164.70,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_12509",2,"2",45147157,NA,NA,165.43,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_42570",2,"2",45147640,NA,NA,165.43,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_14981",2,"2",45458650,NA,NA,168.41,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c1_4826",2,"2",45458875,NA,NA,168.42,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_4847",2,"2",45616677,NA,NA,168.43,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_15018",2,"2",45618297,NA,NA,170.53,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c1_4849",2,"2",45618958,NA,NA,170.88,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_15041",2,"2",45652545,NA,NA,172.61,2,3,0,0,1,1,1,1,0,1
     "solcap_snp_c2_15042",2,"2",45652553,NA,NA,175.68,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_15046",2,"2",45652811,NA,NA,175.68,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_15047",2,"2",45652877,NA,NA,176.03,1,1,0,1,0,0,0,1,0,0
     "solcap_snp_c2_15048",2,"2",45652958,NA,NA,176.28,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_15065",2,"2",45694316,NA,NA,176.45,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c1_4860",2,"2",45695631,NA,NA,176.60,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_15066",2,"2",45695637,NA,NA,176.76,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_4873",2,"2",45744372,NA,NA,176.88,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_4881",2,"2",45756458,NA,NA,176.88,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_7873",2,"2",46195290,NA,NA,177.44,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_7872",2,"2",46195303,NA,NA,178.19,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_7867",2,"2",46196437,NA,NA,179.89,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c1_7848",2,"2",46291502,NA,NA,179.89,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c1_7834",2,"2",46384191,NA,NA,181.66,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_24869",2,"2",46387342,NA,NA,182.20,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_47211",2,"2",46940997,NA,NA,182.20,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_47197",2,"2",47137310,NA,NA,184.36,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_47199",2,"2",47137738,NA,NA,184.36,3,3,1,0,1,1,1,0,1,1
     "solcap_snp_c2_47200",2,"2",47137863,NA,NA,187.30,2,0,0,0,1,1,0,0,0,0
     "solcap_snp_c2_47201",2,"2",47141179,NA,NA,188.15,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_10607",2,"2",47182635,NA,NA,189.23,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_10593",2,"2",47302272,NA,NA,193.87,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_35686",2,"2",47323948,NA,NA,193.87,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35687",2,"2",47324096,NA,NA,193.87,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35690",2,"2",47324235,NA,NA,193.87,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_35691",2,"2",47324287,NA,NA,194.70,0,3,0,0,0,0,1,1,0,1
     "solcap_snp_c2_35692",2,"2",47325069,NA,NA,194.70,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_35697",2,"2",47325513,NA,NA,195.66,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_35700",2,"2",47326506,NA,NA,196.63,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_35701",2,"2",47327334,NA,NA,196.63,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_35702",2,"2",47327423,NA,NA,196.63,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_35706",2,"2",47327566,NA,NA,197.84,1,1,0,1,0,0,0,1,0,0
     "solcap_snp_c1_11458",2,"2",47625835,NA,NA,200.53,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c1_11459",2,"2",47625847,NA,NA,201.80,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_38551",2,"2",47627255,NA,NA,201.81,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_38552",2,"2",47627384,NA,NA,201.81,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_38553",2,"2",47627420,NA,NA,201.95,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_38555",2,"2",47627603,NA,NA,202.72,1,2,0,1,0,0,1,0,0,1
     "solcap_snp_c1_5931",2,"2",48498256,NA,NA,206.31,2,3,1,1,0,0,1,0,1,1
     "solcap_snp_c1_5895",2,"2",48565009,NA,NA,206.32,1,1,1,0,0,0,0,0,1,0
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.001 0.005
     Iter: 2 0.024 0.000 0.001 0.007
     Iter: 3 0.028 0.000 0.000 0.008
     Iter: 4 0.030 0.000 0.000 0.008
     Iter: 5 0.030 0.000 0.000 0.008
     Iter: 6 0.031 0.000 0.000 0.008
     Iter: 7 0.031 0.000 0.000 0.008
     Iter: 8 0.031 0.000 0.000 0.008
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
    
     Linkage group 1 ...
     INFO: Going singlemode. Using one CPU for calculation.
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
    
     Linkage group 1 ...
     trying URL 'https://github.com/mmollina/MAPpoly_vignettes/raw/master/data/sweet_sample_ch3.vcf.gz'
     Content type 'text/plain; charset=utf-8' length 1416917 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading data...
     Scanning file to determine attributes.
     File attributes:
     meta lines: 8
     header_line: 9
     variant count: 200
     column count: 326
    
     Meta line 8 read in.
     All meta lines processed.
     gt matrix initialized.
     Character matrix gt created.
     Character matrix gt rows: 200
     Character matrix gt cols: 326
     skip: 0
     nrows: 200
     row_num: 0
    
     Processed variant: 200
     All variants processed
     Processing genotypes...Done!
     Selected ploidy: 6
     Done!
     Read the following data:
     Ploidy level: 6
     No. individuals: 315
     No. markers: 167
     No. informative markers: 167 (100%)
     This dataset contains chromosome information.
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     This is an object of class 'mappoly.data'
     Ploidy level: 6
     No. individuals: 315
     No. markers: 164
     Missing data under prob. threshold: 6.01%
     Redundant markers: 1.8%
    
     No. markers per chromosome: not available
     ----------
     No. of markers per dosage combination in both parents:
     P1 P2 freq
     0 1 50
     0 2 8
     0 3 4
     0 4 1
     1 0 26
     1 1 12
     1 2 9
     1 3 4
     1 4 1
     2 0 3
     2 1 10
     2 2 7
     2 3 7
     2 4 4
     3 0 3
     3 1 3
     3 2 7
     3 3 1
     4 0 1
     4 1 2
     4 2 1
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/SolCAP_dosage'
     Content type 'text/plain; charset=utf-8' length 1445956 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 160
     No. markers: 4017
     No. informative markers: 4017 (100%)
     ...
    
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/hexa_sample'
     Content type 'text/plain; charset=utf-8' length 142904 bytes (139 KB)
     ==================================================
     downloaded 139 KB
    
     Reading the following data:
     Ploidy level: 6
     No. individuals: 50
     No. markers: 100
     No. informative markers: 71 (71%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/tetra_solcap.csv'
     Content type 'text/plain; charset=utf-8' length 1448564 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 160
     No. markers: 4017
     No. informative markers: 4017 (100%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Done with filtering.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/fitpoly.dat'
     Content type 'text/plain; charset=utf-8' length 3563386 bytes (3.4 MB)
     ==================================================
     downloaded 3.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 150
     No. markers: 145
     No. informative markers: 138 (95.2%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     This is an object of class 'mappoly.data'
     Ploidy level: 4
     No. individuals: 150
     No. markers: 138
     Missing data: 3.89%
    
     No. markers per chromosome: not available
     ----------
     No. of markers per dosage combination in both parents:
     P1 P2 freq
     0 1 18
     0 2 24
     1 0 18
     1 1 19
     1 2 10
     1 3 3
     2 0 13
     2 1 6
     2 2 15
     2 3 2
     3 1 1
     3 2 5
     3 3 2
     3 4 1
     4 2 1
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007
     Iter: 1 0.031 0.000 0.000 0.008
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 20
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.002 0.006 0.006 0.007 0.006 0.011 0.008 0.004 0.003 0.001 0.004 0.001 0.003 0.007 0.009 0.009 0.000
     Iter: 2 0.024 0.000 0.001 0.007 0.007 0.009 0.006 0.014 0.010 0.004 0.003 0.001 0.004 0.001 0.004 0.009 0.013 0.016 0.000
     Iter: 3 0.028 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.001 0.004 0.009 0.016 0.020 0.000
     Iter: 4 0.029 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.004 0.008 0.018 0.024 0.000
     Iter: 5 0.030 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.008 0.020 0.027 0.000
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.007 0.021 0.029 0.000
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.006 0.021 0.031 0.000
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.005 0.022 0.032 0.000
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.004 0.022 0.033 0.000
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.004 0.022 0.034 0.000
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.035 0.000
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.035 0.000
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.036 0.000
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.036 0.000
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.001 0.024 0.037 0.000
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.001 0.024 0.037 0.000
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.037 0.000
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.037 0.000
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.038 0.000
     Iter: 23 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.038 0.000
     INFO: Going singlemode. Using one CPU for calculation.
     2 submaps found ...
     adding block 2 of 2
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
    
     M_1
     ----------------------------------
     dosage P1: 1
     dosage P2: 2
     ----
     dosage distribution
     0 1 2 3 mis
     23 120 126 31 0
     ----
     expected polysomic segregation
     0 1 2 3 4 5 6
     0.1 0.4 0.4 0.1 0.0 0.0 0.0
     ----------------------------------
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.017 0.010
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.029 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010
     Iter: 1 0.030 0.000 0.000 0.007 0.007 0.009 0.006 0.017 0.010
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.006 0.006 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.014
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.012
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.010
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.010
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.009
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.009
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 23 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 24 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Updating map 1
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 127 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test-cahe_twopts.R:8:3): compute genotype counts correctly ───────────
     Error in `get_cache_two_pts_from_web(ploidy = 4)`: Cache file not found. Try to use get.from.web = FALSE
     Backtrace:
     ▆
     1. └─mappoly::get_cache_two_pts_from_web(ploidy = 4) at test-cahe_twopts.R:8:2
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 127 ]
     Error: Test failures
     Execution halted
Flavor: r-patched-linux-x86_64

Version: 0.3.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [83s/382s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > if(requireNamespace("testthat", quietly = TRUE)){
     + library(testthat)
     + library(mappoly)
     + test_check("mappoly")
     + }
     =====================================================
     MAPpoly Package [Version 0.3.02022-01-11 09:22:41 UTC]
     More information: https://github.com/mmollina/MAPpoly
     =====================================================
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     INFO: Going singlemode. Using one CPU.
     Stress: 0.30318
     Mean Nearest Neighbour Fit: 6.18154INFO: Using 2 CPUs for calculation.
     INFO: Done with 2701 pairs of markers
     INFO: Calculation took: 11.802 seconds
     INFO: Using 2 CPUs for calculation.
     INFO: Done with 2701 pairs of markers
     INFO: Calculation took: 10.91 seconds
     Going RcppParallel mode.
     ...
     Done with pairwise computation.
     ~~~~~~~
     Reorganizing results
     ...
     Caching the following dosage combination:
     P.k P.k+1 Q.k Q.k+1
     Conf.1 3 0 2 1
     Conf.2 3 3 2 2
     Conf.3 3 4 2 3
     Conf.4 4 0 3 1
     Conf.5 4 3 3 2
     Conf.6 4 4 3 3
     INFO: Going singlemode. Using one Core/CPU/PC for calculation.
     INFO: Done with 6 phase configurations
     INFO: Calculation took: 0.567 seconds
     This is an object of class 'cache.info'
     -----------------------------------------------------
     Ploidy level: 4
     No. marker combinations: 625
     -----------------------------------------------------
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
     Ploidy level:4
     Number of individuals:160
     ..................................................
     ..................................................
     ..................................................
     ..........
     Ploidy level:4
     Number of individuals:160
     ..................................................
     ..................................................
     ..................................................
     ..........
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     This is an object of class 'mappoly.map'
     Ploidy level: 4
     No. individuals: 160
     No. markers: 5
     No. linkage phases: 1
    
     ---------------------------------------------
     Linkage phase configuration: 1
     log-likelihood: -123.7037
     LOD: 0
    
     a b c d e f g h
     solcap_snp_c2_4408 o o o o o o o | 0.0
     solcap_snp_c2_21332 o o o | o o | | 0.7
     solcap_snp_c2_21314 o o o o o o o | 0.8
     solcap_snp_c2_4437 o o o | o o | | 0.9
     solcap_snp_c2_6674 | | | | | | | o 0.9
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     Number of markers: 5
     4 markers...
     • Trying sequence: 1 2 3 4 :
     1 phase(s): .
     5/5:(100%) 7: 1 ph (1/1) -- tail: 4 |||| |||•
     Markers in the initial sequence: 5
     Mapped markers : 5 (100%)
     Number of markers: 5
     4 markers...
     • Trying sequence: 1 2 3 4 :
     1 phase(s): .
     5/5:(100%) 7: 1 ph (1/1) -- tail: 4 |||| |||•
     Markers in the initial sequence: 5
     Mapped markers : 5 (100%)
     Ploidy level: 4
     Rec. Frac. Limit: 0.5
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.019 0.007 0.012 0.007
     Iter: 2 0.028 0.006 0.015 0.008
     Iter: 3 0.032 0.005 0.016 0.009
     Iter: 4 0.034 0.005 0.017 0.010
     Iter: 5 0.036 0.004 0.017 0.011
     Iter: 6 0.036 0.004 0.017 0.011
     Iter: 7 0.037 0.003 0.017 0.012
     Iter: 8 0.037 0.003 0.017 0.013
     Iter: 9 0.037 0.003 0.016 0.013
     Iter: 10 0.037 0.002 0.016 0.014
     Iter: 11 0.037 0.002 0.016 0.014
     Iter: 12 0.037 0.002 0.016 0.014
     Iter: 13 0.037 0.002 0.016 0.015
     Iter: 14 0.038 0.002 0.016 0.015
     Iter: 15 0.038 0.002 0.016 0.015
     Iter: 16 0.038 0.002 0.016 0.015
     Iter: 17 0.038 0.002 0.016 0.016
     Iter: 18 0.038 0.002 0.016 0.016
     Iter: 19 0.038 0.002 0.016 0.016
     Iter: 20 0.038 0.002 0.016 0.016
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.001 0.005
     Iter: 2 0.024 0.000 0.001 0.007
     Iter: 3 0.028 0.000 0.000 0.008
     Iter: 4 0.030 0.000 0.000 0.008
     Iter: 5 0.030 0.000 0.000 0.008
     Iter: 6 0.031 0.000 0.000 0.008
     Iter: 7 0.031 0.000 0.000 0.008
     Iter: 8 0.031 0.000 0.000 0.008
     "Marker Name","LG","Ref Chrom","Ref Position","Ref Allele","Alt Allele","Map Position","Dose in P1","Dose in P2","ph.P.a","ph.P.b","ph.P.c","ph.P.d","ph.Q.e","ph.Q.f","ph.Q.g","ph.Q.h"
     "solcap_snp_c2_51460",1,"1", 151147,NA,NA, 0.00,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_36608",1,"1", 251032,NA,NA, 3.20,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_36615",1,"1", 252977,NA,NA, 3.21,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_36658",1,"1", 269300,NA,NA, 3.22,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_10930",1,"1", 309242,NA,NA, 3.92,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_36629",1,"1", 433701,NA,NA, 4.62,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_10915",1,"1", 481195,NA,NA, 5.56,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c1_10918",1,"1", 496966,NA,NA, 6.18,1,2,0,1,0,0,0,1,1,0
     "solcap_snp_c2_36650",1,"1", 507322,NA,NA, 7.67,1,2,0,1,0,0,0,1,1,0
     "solcap_snp_c2_36643",1,"1", 508489,NA,NA, 8.71,2,2,0,0,1,1,1,0,0,1
     "solcap_snp_c2_36660",1,"1", 534726,NA,NA, 9.12,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_36664",1,"1", 535354,NA,NA, 9.40,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c2_36686",1,"1", 601257,NA,NA, 9.41,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_54803",1,"1", 811809,NA,NA, 9.92,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c2_54800",1,"1", 813297,NA,NA, 9.93,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c2_54797",1,"1", 817305,NA,NA, 10.46,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_56714",1,"1", 931273,NA,NA, 10.47,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_6865",1,"1", 1513756,NA,NA, 12.72,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_6683",1,"1", 1828357,NA,NA, 15.31,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c1_2417",1,"1", 1838764,NA,NA, 15.32,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_6713",1,"1", 2068205,NA,NA, 15.58,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21098",1,"1", 2589396,NA,NA, 17.78,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21100",1,"1", 2591241,NA,NA, 19.16,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21233",1,"1", 2956217,NA,NA, 21.10,2,1,0,1,0,1,0,1,0,0
     "solcap_snp_c1_6704",1,"1", 2957498,NA,NA, 21.20,1,2,0,0,1,0,0,1,1,0
     "solcap_snp_c2_21236",1,"1", 2958510,NA,NA, 22.07,3,2,0,1,1,1,0,1,1,0
     "solcap_snp_c1_6123",1,"1", 3296081,NA,NA, 25.79,2,2,1,0,1,0,0,1,1,0
     "solcap_snp_c1_6114",1,"1", 3693321,NA,NA, 25.97,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_6109",1,"1", 3716835,NA,NA, 26.67,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_51791",1,"1", 4309511,NA,NA, 31.96,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_49938",1,"1", 4597936,NA,NA, 31.97,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_56125",1,"1", 5291666,NA,NA, 34.56,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_45058",1,"1", 5347412,NA,NA, 35.15,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_45071",1,"1", 5386765,NA,NA, 36.19,3,1,1,1,0,1,1,0,0,0
     "solcap_snp_c2_45064",1,"1", 5502148,NA,NA, 36.69,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_13289",1,"1", 5504921,NA,NA, 36.70,2,3,1,0,0,1,0,1,1,1
     "solcap_snp_c1_13293",1,"1", 5505413,NA,NA, 36.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_27877",1,"1", 6071274,NA,NA, 38.46,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_27878",1,"1", 6071298,NA,NA, 38.47,1,1,0,0,0,1,1,0,0,0
     "solcap_snp_c2_27882",1,"1", 6071676,NA,NA, 38.73,3,1,0,1,1,1,1,0,0,0
     "solcap_snp_c2_27884",1,"1", 6071778,NA,NA, 38.74,3,1,0,1,1,1,1,0,0,0
     "solcap_snp_c2_27885",1,"1", 6071817,NA,NA, 39.13,0,3,0,0,0,0,0,1,1,1
     "solcap_snp_c2_27903",1,"1", 6295642,NA,NA, 40.12,2,3,0,1,0,1,0,1,1,1
     "solcap_snp_c2_27918",1,"1", 6587772,NA,NA, 40.56,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_48155",1,"1", 7165330,NA,NA, 41.98,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_48154",1,"1", 7165840,NA,NA, 42.33,2,3,0,1,0,1,0,1,1,1
     "solcap_snp_c2_50011",1,"1", 7446981,NA,NA, 42.34,2,3,1,0,1,0,0,1,1,1
     "solcap_snp_c1_16312",1,"1", 7641280,NA,NA, 43.72,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52709",1,"1", 8645609,NA,NA, 44.63,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52712",1,"1", 8645693,NA,NA, 44.64,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52705",1,"1", 8653609,NA,NA, 45.12,2,1,0,1,0,1,0,1,0,0
     "solcap_snp_c2_48549",1,"1",10570936,NA,NA, 52.54,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_48563",1,"1",10573573,NA,NA, 52.55,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_55639",1,"1",11235975,NA,NA, 52.56,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_56356",1,"1",11737675,NA,NA, 52.57,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_56359",1,"1",11742617,NA,NA, 52.81,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_57284",1,"1",11774518,NA,NA, 53.18,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_45637",1,"1",12022263,NA,NA, 53.55,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_55008",1,"1",12994177,NA,NA, 57.69,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_53521",1,"1",13266849,NA,NA, 57.70,2,2,0,1,0,1,0,0,1,1
     "solcap_snp_c2_43984",1,"1",13369857,NA,NA, 57.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_12938",1,"1",13392343,NA,NA, 58.21,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_43970",1,"1",13545289,NA,NA, 59.61,1,1,0,1,0,0,0,0,1,0
     "solcap_snp_c2_43973",1,"1",13547044,NA,NA, 60.07,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c1_8908",1,"1",13656016,NA,NA, 60.91,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_54355",1,"1",13740719,NA,NA, 63.95,2,2,1,0,1,0,0,1,0,1
     "solcap_snp_c2_54353",1,"1",13747285,NA,NA, 66.18,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_49867",1,"1",16399117,NA,NA, 66.19,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_48568",1,"1",17370536,NA,NA, 66.20,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c1_8593",1,"1",17664021,NA,NA, 66.21,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_53759",1,"1",18753871,NA,NA, 66.22,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_56842",1,"1",18925684,NA,NA, 66.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c1_16421",1,"1",18926984,NA,NA, 66.59,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_14663",1,"1",19664067,NA,NA, 66.71,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_49326",1,"1",20549734,NA,NA, 68.28,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c1_5477",1,"1",23657080,NA,NA, 68.29,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_43643",1,"1",29180891,NA,NA, 69.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_22549",1,"1",29678234,NA,NA, 69.24,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_22546",1,"1",29679750,NA,NA, 69.25,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_7136",1,"1",30125081,NA,NA, 69.59,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_11066",1,"1",32091982,NA,NA, 69.93,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_9378",1,"1",34098178,NA,NA, 70.23,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_27683",1,"1",37067385,NA,NA, 70.27,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_27677",1,"1",37071329,NA,NA, 70.59,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42829",1,"1",38478335,NA,NA, 71.26,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_15714",1,"1",39325633,NA,NA, 71.51,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_45395",1,"1",39529256,NA,NA, 71.81,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_49732",1,"1",41859322,NA,NA, 73.88,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_14648",1,"1",41947283,NA,NA, 73.89,4,1,1,1,1,1,0,1,0,0
     "solcap_snp_c1_14654",1,"1",41979022,NA,NA, 73.90,4,1,1,1,1,1,0,1,0,0
     "solcap_snp_c2_32111",1,"1",42197632,NA,NA, 73.91,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_32112",1,"1",42197668,NA,NA, 74.94,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_50028",1,"1",43180567,NA,NA, 76.56,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_50023",1,"1",43196126,NA,NA, 77.18,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_49042",1,"1",43330828,NA,NA, 78.19,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_16169",1,"1",44194024,NA,NA, 81.89,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_14248",1,"1",44696488,NA,NA, 81.90,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c1_14249",1,"1",44696500,NA,NA, 82.40,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_14259",1,"1",44700858,NA,NA, 82.41,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_14261",1,"1",44702300,NA,NA, 82.42,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c2_53708",1,"1",44890351,NA,NA, 83.08,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_40131",1,"1",45751390,NA,NA, 83.09,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_54811",1,"1",46271054,NA,NA, 83.10,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_15855",1,"1",46323471,NA,NA, 83.11,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_35220",1,"1",47299682,NA,NA, 83.12,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_35218",1,"1",47300005,NA,NA, 83.13,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_35601",1,"1",50791085,NA,NA, 85.14,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_694",1,"1",51290105,NA,NA, 85.74,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_686",1,"1",51324458,NA,NA, 85.80,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c2_57898",1,"1",51736618,NA,NA, 85.81,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_880",1,"1",54480981,NA,NA, 86.14,4,3,1,1,1,1,1,1,1,0
     "solcap_snp_c2_55113",1,"1",54580381,NA,NA, 86.15,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_2874",1,"1",55163851,NA,NA, 86.16,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_55621",1,"1",55427211,NA,NA, 86.17,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_55618",1,"1",55427602,NA,NA, 86.35,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c1_14633",1,"1",57931788,NA,NA, 91.38,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_2721",1,"1",58197548,NA,NA, 91.39,1,1,0,0,0,1,1,0,0,0
     "solcap_snp_c2_2653",1,"1",58737622,NA,NA, 92.93,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_2591",1,"1",58985511,NA,NA, 93.92,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_13430",1,"1",59363361,NA,NA, 95.09,1,3,0,1,0,0,1,0,1,1
     "solcap_snp_c2_46523",1,"1",59973949,NA,NA, 95.82,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_46521",1,"1",59974282,NA,NA, 95.83,2,3,1,0,1,0,1,1,1,0
     "solcap_snp_c2_46520",1,"1",59974316,NA,NA, 95.84,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_53347",1,"1",60026944,NA,NA, 96.47,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_35511",1,"1",60433785,NA,NA, 96.48,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35518",1,"1",60512480,NA,NA, 96.49,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35520",1,"1",60513199,NA,NA, 96.50,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35536",1,"1",60515867,NA,NA, 97.95,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_35537",1,"1",60516874,NA,NA, 97.96,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_43926",1,"1",60887837,NA,NA, 98.27,2,2,0,1,0,1,1,0,0,1
     "solcap_snp_c2_56267",1,"1",60919490,NA,NA, 99.07,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c2_20798",1,"1",60951573,NA,NA, 99.08,2,2,1,1,0,0,0,1,1,0
     "solcap_snp_c2_20799",1,"1",60951606,NA,NA, 99.29,2,2,0,0,1,1,1,0,0,1
     "solcap_snp_c2_20803",1,"1",60987155,NA,NA, 99.52,1,2,0,0,0,1,1,0,0,1
     "solcap_snp_c2_20890",1,"1",61310805,NA,NA,101.03,3,3,1,1,1,0,1,1,1,0
     "solcap_snp_c2_50903",1,"1",61774492,NA,NA,101.77,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_38428",1,"1",62058660,NA,NA,102.74,1,1,0,0,0,1,0,0,0,1
     "solcap_snp_c2_38406",1,"1",62144916,NA,NA,103.16,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_38404",1,"1",62148178,NA,NA,103.17,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c2_38448",1,"1",62289476,NA,NA,104.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_12106",1,"1",62802674,NA,NA,106.27,1,3,0,0,0,1,1,0,1,1
     "solcap_snp_c2_41337",1,"1",62930793,NA,NA,106.84,1,3,0,0,0,1,1,0,1,1
     "solcap_snp_c2_32359",1,"1",63208419,NA,NA,108.73,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_9679",1,"1",63338027,NA,NA,110.16,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_12057",1,"1",63596472,NA,NA,111.12,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_13686",1,"1",64120988,NA,NA,113.01,2,3,0,0,1,1,1,0,1,1
     "solcap_snp_c2_46195",1,"1",64259858,NA,NA,113.66,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_13751",1,"1",64614114,NA,NA,113.95,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_4415",1,"1",65036984,NA,NA,116.70,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c2_13675",1,"1",65036993,NA,NA,116.94,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_13676",1,"1",65054301,NA,NA,116.95,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_13671",1,"1",65062849,NA,NA,116.96,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c2_13653",1,"1",65270150,NA,NA,117.37,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c2_13650",1,"1",65277543,NA,NA,117.38,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_4744",1,"1",65472678,NA,NA,118.20,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_14467",1,"1",65694581,NA,NA,118.81,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14470",1,"1",65697018,NA,NA,118.83,2,4,1,0,0,1,1,1,1,1
     "solcap_snp_c1_4706",1,"1",65780052,NA,NA,119.64,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14487",1,"1",65780861,NA,NA,119.65,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14489",1,"1",65781907,NA,NA,119.66,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14491",1,"1",65782311,NA,NA,119.69,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_14492",1,"1",65782372,NA,NA,119.70,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_14493",1,"1",65782860,NA,NA,120.27,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_4745",1,"1",66094082,NA,NA,123.09,2,2,1,0,0,1,1,1,0,0
     "solcap_snp_c1_4748",1,"1",66259325,NA,NA,123.10,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14589",1,"1",66283156,NA,NA,123.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_37564",1,"1",66307265,NA,NA,123.24,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_14595",1,"1",66307870,NA,NA,123.66,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_37566",1,"1",66307870,NA,NA,123.67,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_4752",1,"1",66336597,NA,NA,124.20,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14608",1,"1",66349497,NA,NA,124.47,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_4757",1,"1",66354237,NA,NA,124.83,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_4763",1,"1",66376115,NA,NA,124.84,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c1_5150",1,"1",66675718,NA,NA,127.51,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_58099",1,"1",66845540,NA,NA,127.69,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_5145",1,"1",66904071,NA,NA,127.70,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_20569",1,"1",67013419,NA,NA,132.36,3,1,1,1,1,0,0,0,1,0
     "solcap_snp_c2_20501",1,"1",67211402,NA,NA,136.36,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c2_20502",1,"1",67221811,NA,NA,137.02,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c2_20505",1,"1",67223365,NA,NA,138.09,3,2,0,1,1,1,0,0,1,1
     "solcap_snp_c2_20506",1,"1",67223618,NA,NA,139.27,3,3,0,1,1,1,1,0,1,1
     "solcap_snp_c2_20508",1,"1",67224636,NA,NA,139.92,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_20513",1,"1",67277917,NA,NA,140.32,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_20521",1,"1",67293276,NA,NA,140.85,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_20522",1,"1",67294203,NA,NA,141.34,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_6501",1,"1",67459562,NA,NA,142.30,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_6518",1,"1",67605601,NA,NA,142.31,2,2,0,1,0,1,0,0,1,1
     "solcap_snp_c2_13766",1,"1",67896690,NA,NA,142.32,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_52492",1,"1",67969508,NA,NA,143.43,3,2,1,1,0,1,0,0,1,1
     "solcap_snp_c2_52484",1,"1",68069976,NA,NA,144.07,1,2,0,0,1,0,1,1,0,0
     "solcap_snp_c2_49451",1,"1",68416146,NA,NA,145.42,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_14044",1,"1",68529607,NA,NA,146.51,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_51055",1,"1",68950490,NA,NA,147.79,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c1_11769",1,"1",69200071,NA,NA,148.59,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_39834",1,"1",69381232,NA,NA,149.22,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_17592",1,"1",69809943,NA,NA,150.28,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_17529",1,"1",69902111,NA,NA,150.29,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_17531",1,"1",70016341,NA,NA,151.13,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_17537",1,"1",70097616,NA,NA,151.14,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c1_15579",1,"1",70341165,NA,NA,151.68,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c1_15580",1,"1",70341195,NA,NA,151.91,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c2_53380",1,"1",70371798,NA,NA,152.63,3,2,0,1,1,1,0,0,1,1
     "solcap_snp_c2_53381",1,"1",70372029,NA,NA,153.40,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c2_17191",1,"1",70474751,NA,NA,153.41,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_5657",1,"1",70560319,NA,NA,154.13,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c1_5656",1,"1",70562884,NA,NA,154.14,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_5653",1,"1",70697401,NA,NA,154.15,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_3860",1,"1",71009488,NA,NA,155.37,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c1_3863",1,"1",71009686,NA,NA,156.05,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_12076",1,"1",71090664,NA,NA,156.55,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_3867",1,"1",71239298,NA,NA,157.43,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_3868",1,"1",71239559,NA,NA,157.65,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_3876",1,"1",71278255,NA,NA,158.09,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_12106",1,"1",71298195,NA,NA,158.31,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_3894",1,"1",71421320,NA,NA,158.74,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_12126",1,"1",71450592,NA,NA,159.39,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_12216",1,"1",72051429,NA,NA,160.94,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_12217",1,"1",72051456,NA,NA,160.97,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_3848",1,"1",72108418,NA,NA,160.98,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_3851",1,"1",72112064,NA,NA,160.99,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_9565",1,"1",72320561,NA,NA,162.31,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_9566",1,"1",72320582,NA,NA,162.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_9573",1,"1",72504567,NA,NA,162.33,2,2,0,1,1,0,0,0,1,1
     "solcap_snp_c2_31820",1,"1",72528671,NA,NA,163.44,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_31821",1,"1",72531263,NA,NA,163.45,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_9583",1,"1",72540600,NA,NA,163.66,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c1_9587",1,"1",72541075,NA,NA,163.67,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_14274",1,"1",74061621,NA,NA,166.55,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c1_4617",1,"1",74355434,NA,NA,168.09,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_14365",1,"1",74688262,NA,NA,168.11,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14366",1,"1",74688318,NA,NA,168.54,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c1_14931",1,"1",75007319,NA,NA,168.55,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_16369",1,"1",75164058,NA,NA,169.98,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c1_5267",1,"1",75333553,NA,NA,170.01,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_5281",1,"1",75441912,NA,NA,170.02,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_5286",1,"1",75477570,NA,NA,170.90,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_16424",1,"1",75478258,NA,NA,171.43,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_16425",1,"1",75485276,NA,NA,171.73,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_16466",1,"1",75749019,NA,NA,171.74,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c1_5346",1,"1",75789912,NA,NA,172.18,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_16435",1,"1",76304406,NA,NA,172.61,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c2_2509",1,"1",76406745,NA,NA,172.62,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_2291",1,"1",76480645,NA,NA,173.91,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_641",1,"1",76511147,NA,NA,173.93,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_2420",1,"1",76953005,NA,NA,175.04,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_2423",1,"1",76958677,NA,NA,175.41,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_2424",1,"1",76960116,NA,NA,176.33,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_2427",1,"1",76960344,NA,NA,177.73,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c2_2450",1,"1",77056087,NA,NA,177.96,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2463",1,"1",77190863,NA,NA,178.95,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2464",1,"1",77190891,NA,NA,178.96,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2466",1,"1",77191250,NA,NA,179.19,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2505",1,"1",77350779,NA,NA,179.67,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_2508",1,"1",77353050,NA,NA,180.18,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_758",1,"1",77526728,NA,NA,180.52,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_2201",1,"1",77738922,NA,NA,180.88,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_601",1,"1",78168030,NA,NA,182.58,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_607",1,"1",78176086,NA,NA,182.59,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2299",1,"1",78192398,NA,NA,183.05,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_2354",1,"1",78430745,NA,NA,183.73,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_50486",1,"1",78756800,NA,NA,184.18,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50484",1,"1",78757017,NA,NA,184.41,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50483",1,"1",78757327,NA,NA,184.64,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50502",1,"1",78809381,NA,NA,184.88,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c1_15872",1,"1",78928170,NA,NA,185.35,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_7007",1,"1",79083850,NA,NA,189.67,2,2,1,0,1,0,0,1,1,0
     "solcap_snp_c1_2484",1,"1",79157311,NA,NA,193.43,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_7094",1,"1",79187093,NA,NA,193.46,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_7193",1,"1",79391798,NA,NA,193.94,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_7208",1,"1",79456001,NA,NA,197.09,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c1_2519",1,"1",79487369,NA,NA,197.10,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c1_2520",1,"1",79487485,NA,NA,197.40,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_7241",1,"1",79678600,NA,NA,197.59,3,3,1,1,0,1,1,0,1,1
     "solcap_snp_c2_7242",1,"1",79679061,NA,NA,197.60,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_7245",1,"1",79679433,NA,NA,197.96,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_7246",1,"1",79679919,NA,NA,198.32,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c1_2531",1,"1",79711129,NA,NA,198.33,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_7328",1,"1",79955769,NA,NA,199.81,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_6990",1,"1",80077222,NA,NA,200.92,2,3,1,0,0,1,0,1,1,1
     "solcap_snp_c1_2458",1,"1",80121157,NA,NA,200.93,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_7053",1,"1",80228512,NA,NA,202.00,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7055",1,"1",80229751,NA,NA,203.13,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7056",1,"1",80229823,NA,NA,203.59,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_7061",1,"1",80230621,NA,NA,204.94,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7062",1,"1",80230636,NA,NA,204.95,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c1_1853",1,"1",80429124,NA,NA,205.22,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_5091",1,"1",80558977,NA,NA,206.13,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_5077",1,"1",80591992,NA,NA,207.68,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_5078",1,"1",80592039,NA,NA,208.01,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_5039",1,"1",80669402,NA,NA,209.26,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_9727",1,"1",80833354,NA,NA,209.27,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_9726",1,"1",80833555,NA,NA,209.28,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_9722",1,"1",80835882,NA,NA,209.91,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_9988",1,"1",81013079,NA,NA,212.06,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_9925",1,"1",81410356,NA,NA,212.44,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_9892",1,"1",81567397,NA,NA,215.81,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_9864",1,"1",81615881,NA,NA,215.82,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c1_3275",1,"1",81750527,NA,NA,217.23,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_3255",1,"1",81795335,NA,NA,217.88,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c1_3241",1,"1",81924813,NA,NA,219.27,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_3234",1,"1",81927346,NA,NA,219.38,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_47360",1,"1",82220028,NA,NA,221.34,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4896",1,"1",82628961,NA,NA,222.55,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_4799",1,"1",82927941,NA,NA,222.86,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_1638",1,"1",82935846,NA,NA,222.87,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_1653",1,"1",83012188,NA,NA,225.35,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c1_1683",1,"1",83059366,NA,NA,226.88,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4844",1,"1",83060466,NA,NA,227.75,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c2_4845",1,"1",83060720,NA,NA,229.69,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4860",1,"1",83130390,NA,NA,229.71,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_4864",1,"1",83138355,NA,NA,230.11,2,4,0,1,0,1,1,1,1,1
     "solcap_snp_c2_4875",1,"1",83177618,NA,NA,231.71,3,1,1,1,1,0,1,0,0,0
     "solcap_snp_c2_4884",1,"1",83186994,NA,NA,232.67,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_4885",1,"1",83187000,NA,NA,232.90,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_4898",1,"1",83283573,NA,NA,232.91,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4904",1,"1",83416355,NA,NA,234.34,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4907",1,"1",83418574,NA,NA,236.34,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4910",1,"1",83419340,NA,NA,237.80,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_1737",1,"1",83602469,NA,NA,238.45,2,3,0,1,0,1,1,0,1,1
     "solcap_snp_c1_1739",1,"1",83608625,NA,NA,240.68,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_4614",1,"1",83843457,NA,NA,240.69,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_4664",1,"1",84062694,NA,NA,242.21,1,3,0,0,0,1,0,1,1,1
     "solcap_snp_c2_4708",1,"1",84214693,NA,NA,244.20,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_4713",1,"1",84217673,NA,NA,244.21,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_36495",1,"1",84457206,NA,NA,244.46,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_34546",1,"1",84727952,NA,NA,246.10,1,3,0,0,0,1,0,1,1,1
     "solcap_snp_c1_10354",1,"1",84979069,NA,NA,251.03,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_22",1,"1",85243830,NA,NA,251.60,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_24",1,"1",85323495,NA,NA,255.50,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_13385",1,"1",85715515,NA,NA,256.96,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_46448",1,"1",85760106,NA,NA,256.97,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_53075",1,"1",85902499,NA,NA,257.70,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_42943",1,"1",85953353,NA,NA,258.40,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_49917",1,"1",86090288,NA,NA,258.41,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_49911",1,"1",86095463,NA,NA,258.42,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_49910",1,"1",86095890,NA,NA,258.43,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14839",1,"1",86328984,NA,NA,260.84,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14707",1,"1",86355213,NA,NA,260.85,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14708",1,"1",86356234,NA,NA,262.85,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14709",1,"1",86356378,NA,NA,262.86,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_4796",1,"1",86388041,NA,NA,263.11,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14730",1,"1",86441357,NA,NA,266.54,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14733",1,"1",86527670,NA,NA,267.31,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_4799",1,"1",86663770,NA,NA,269.34,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14761",1,"1",86750111,NA,NA,270.26,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14762",1,"1",86750599,NA,NA,270.54,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14763",1,"1",86847560,NA,NA,270.82,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14764",1,"1",86847664,NA,NA,271.20,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14772",1,"1",86877778,NA,NA,271.58,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14779",1,"1",86887803,NA,NA,274.05,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_4803",1,"1",86942483,NA,NA,276.39,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14827",1,"1",87096629,NA,NA,277.06,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14840",1,"1",87161581,NA,NA,278.23,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_14841",1,"1",87161695,NA,NA,279.54,3,3,1,0,1,1,0,1,1,1
     "solcap_snp_c2_14848",1,"1",87196823,NA,NA,280.06,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c2_37836",1,"1",87392825,NA,NA,282.11,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_37820",1,"1",87463711,NA,NA,282.12,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_11288",1,"1",87558384,NA,NA,282.13,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_11308",1,"1",87663528,NA,NA,287.31,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_37850",1,"1",87731594,NA,NA,287.32,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_37816",1,"1",87746020,NA,NA,288.43,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_9428",1,"1",87944667,NA,NA,298.18,3,1,1,1,1,0,0,1,0,0
     "solcap_snp_c1_9430",1,"1",87965033,NA,NA,302.34,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_22105",1,"1",88057376,NA,NA,306.51,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_9413",1,"1",88294049,NA,NA,309.12,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_9406",1,"1",88347489,NA,NA,309.94,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_30963",1,"1",88362769,NA,NA,313.20,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_30961",1,"1",88389459,NA,NA,313.21,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_9397",1,"1",88409394,NA,NA,314.43,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_9392",1,"1",88434818,NA,NA,314.44,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_30958",1,"1",88451845,NA,NA,316.36,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_30956",1,"1",88452032,NA,NA,316.37,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_30955",1,"1",88452236,NA,NA,316.38,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_1504",2,"2", 4479289,NA,NA, 0.00,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_4344",2,"2", 4884993,NA,NA, 0.49,0,3,0,0,0,0,1,1,1,0
     "solcap_snp_c2_4354",2,"2", 5159401,NA,NA, 0.65,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_48725",2,"2", 5510874,NA,NA, 0.65,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_3750",2,"2", 6090174,NA,NA, 1.63,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_11591",2,"2", 6647886,NA,NA, 2.61,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_3747",2,"2", 7050814,NA,NA, 2.82,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_4515",2,"2", 8246308,NA,NA, 3.03,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_14690",2,"2", 8398966,NA,NA, 3.03,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_14648",2,"2", 8799627,NA,NA, 3.47,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c1_4792",2,"2", 8802985,NA,NA, 4.42,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_14645",2,"2", 9338437,NA,NA, 5.05,2,0,0,0,1,1,0,0,0,0
     "solcap_snp_c2_730",2,"2",12188889,NA,NA, 5.70,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_41887",2,"2",15292858,NA,NA, 6.44,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_47096",2,"2",16846846,NA,NA, 8.89,0,3,0,0,0,0,0,1,1,1
     "solcap_snp_c2_17387",2,"2",20193366,NA,NA, 9.64,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_17427",2,"2",20681191,NA,NA, 11.77,3,0,1,1,1,0,0,0,0,0
     "solcap_snp_c2_17428",2,"2",20681220,NA,NA, 12.45,1,3,0,0,0,1,1,1,0,1
     "solcap_snp_c1_5739",2,"2",20681710,NA,NA, 13.09,3,0,1,1,1,0,0,0,0,0
     "solcap_snp_c1_11344",2,"2",21725517,NA,NA, 18.09,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_38022",2,"2",22006999,NA,NA, 18.88,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_32421",2,"2",22621554,NA,NA, 21.89,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_9719",2,"2",22749359,NA,NA, 22.13,0,3,0,0,0,0,1,1,0,1
     "solcap_snp_c2_39705",2,"2",23426100,NA,NA, 25.47,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_39677",2,"2",23550342,NA,NA, 26.12,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_37256",2,"2",23737215,NA,NA, 27.42,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_11122",2,"2",23799802,NA,NA, 27.43,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_33996",2,"2",24149138,NA,NA, 30.38,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_53818",2,"2",24744880,NA,NA, 30.38,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_15402",2,"2",24899862,NA,NA, 31.49,4,1,1,1,1,1,0,0,1,0
     "solcap_snp_c2_52630",2,"2",24910552,NA,NA, 34.48,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_21752",2,"2",25050163,NA,NA, 36.52,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_6841",2,"2",25051854,NA,NA, 37.05,4,1,1,1,1,1,0,0,1,0
     "solcap_snp_c2_21746",2,"2",25072703,NA,NA, 37.40,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_21722",2,"2",25322160,NA,NA, 38.34,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_21717",2,"2",25423184,NA,NA, 40.23,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c1_9369",2,"2",26798985,NA,NA, 42.18,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_45392",2,"2",27065211,NA,NA, 42.79,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_45307",2,"2",27086772,NA,NA, 43.77,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_45310",2,"2",27088140,NA,NA, 43.93,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_45311",2,"2",27088340,NA,NA, 44.25,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_13459",2,"2",27143875,NA,NA, 45.22,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13465",2,"2",27190187,NA,NA, 45.92,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_12339",2,"2",27411139,NA,NA, 45.94,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_12345",2,"2",27412322,NA,NA, 46.50,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_12305",2,"2",27458950,NA,NA, 46.91,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_12310",2,"2",27553365,NA,NA, 47.61,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_41980",2,"2",27557427,NA,NA, 48.15,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_12330",2,"2",27618598,NA,NA, 48.15,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42059",2,"2",27676633,NA,NA, 48.15,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_38940",2,"2",27856761,NA,NA, 48.63,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_38938",2,"2",27860023,NA,NA, 49.54,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_38936",2,"2",27860101,NA,NA, 49.88,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_11556",2,"2",28039994,NA,NA, 50.06,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_38952",2,"2",28230312,NA,NA, 52.01,4,1,1,1,1,1,0,0,0,1
     "solcap_snp_c2_19692",2,"2",28745987,NA,NA, 54.82,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_5091",2,"2",28830938,NA,NA, 55.63,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_5088",2,"2",28832209,NA,NA, 55.63,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_15749",2,"2",28938673,NA,NA, 56.86,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_48238",2,"2",29093635,NA,NA, 56.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_48237",2,"2",29093750,NA,NA, 56.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_14280",2,"2",29136032,NA,NA, 56.86,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_48195",2,"2",29136966,NA,NA, 58.21,3,1,1,0,1,1,1,0,0,0
     "solcap_snp_c1_14293",2,"2",29163304,NA,NA, 59.03,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_39155",2,"2",29312895,NA,NA, 59.03,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_39135",2,"2",29416066,NA,NA, 61.45,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_51113",2,"2",29665174,NA,NA, 61.69,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13912",2,"2",29883519,NA,NA, 63.21,1,2,0,1,0,0,0,1,0,1
     "solcap_snp_c2_46903",2,"2",29922714,NA,NA, 63.51,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_46904",2,"2",29922763,NA,NA, 63.51,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13929",2,"2",29928927,NA,NA, 63.80,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_46909",2,"2",29929969,NA,NA, 64.06,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_13910",2,"2",29990872,NA,NA, 64.32,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_13911",2,"2",30022458,NA,NA, 64.32,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_46885",2,"2",30044742,NA,NA, 64.33,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_46887",2,"2",30044882,NA,NA, 64.33,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_46898",2,"2",30147247,NA,NA, 64.62,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_7469",2,"2",30364207,NA,NA, 65.87,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_7412",2,"2",30401330,NA,NA, 66.50,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_7430",2,"2",30480570,NA,NA, 67.07,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_23170",2,"2",30785563,NA,NA, 68.54,1,3,0,1,0,0,1,0,1,1
     "solcap_snp_c2_23188",2,"2",31021446,NA,NA, 69.23,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_23192",2,"2",31060240,NA,NA, 70.07,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_54732",2,"2",31205330,NA,NA, 70.53,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_41534",2,"2",31571193,NA,NA, 71.69,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_13236",2,"2",31663185,NA,NA, 71.70,3,1,1,0,1,1,0,1,0,0
     "solcap_snp_c1_13233",2,"2",31714504,NA,NA, 71.70,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_39191",2,"2",32084708,NA,NA, 72.91,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c1_11581",2,"2",32220207,NA,NA, 74.63,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44771",2,"2",32647466,NA,NA, 75.14,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_44774",2,"2",32668501,NA,NA, 75.61,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44776",2,"2",32669850,NA,NA, 75.61,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44778",2,"2",32671297,NA,NA, 75.82,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44768",2,"2",32806437,NA,NA, 76.46,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_44769",2,"2",32820718,NA,NA, 76.70,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_44770",2,"2",32822882,NA,NA, 76.70,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_13051",2,"2",33076397,NA,NA, 76.70,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c1_4192",2,"2",33204619,NA,NA, 78.22,2,1,0,0,1,1,0,1,0,0
     "solcap_snp_c2_51998",2,"2",33270668,NA,NA, 78.76,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_51985",2,"2",33352028,NA,NA, 80.22,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_51990",2,"2",33357450,NA,NA, 80.23,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_48784",2,"2",33668370,NA,NA, 82.72,3,3,1,1,1,0,0,1,1,1
     "solcap_snp_c2_47037",2,"2",33978883,NA,NA, 85.33,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c1_12264",2,"2",34171806,NA,NA, 86.01,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_33141",2,"2",34594739,NA,NA, 88.89,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_33108",2,"2",34739225,NA,NA, 88.90,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_40155",2,"2",35112346,NA,NA, 90.03,2,3,0,0,1,1,1,1,1,0
     "solcap_snp_c2_50570",2,"2",35399177,NA,NA, 91.75,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_50394",2,"2",35549597,NA,NA, 92.94,2,1,1,1,0,0,0,0,0,1
     "solcap_snp_c2_50391",2,"2",35579108,NA,NA, 93.63,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_50412",2,"2",35600542,NA,NA, 93.63,4,3,1,1,1,1,1,1,1,0
     "solcap_snp_c2_50405",2,"2",35657756,NA,NA, 94.17,1,3,0,0,1,0,1,1,1,0
     "solcap_snp_c2_27433",2,"2",35990927,NA,NA, 94.67,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_27437",2,"2",36019472,NA,NA, 94.67,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_17973",2,"2",36229730,NA,NA, 95.07,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_17954",2,"2",36329410,NA,NA, 96.17,2,2,1,0,0,1,1,0,1,0
     "solcap_snp_c2_17938",2,"2",36364347,NA,NA, 96.74,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17937",2,"2",36364435,NA,NA, 96.99,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17935",2,"2",36364609,NA,NA, 97.09,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17932",2,"2",36364767,NA,NA, 97.18,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17930",2,"2",36364901,NA,NA, 97.18,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17926",2,"2",36365501,NA,NA, 97.38,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17925",2,"2",36365552,NA,NA, 97.79,2,2,0,1,1,0,0,1,0,1
     "solcap_snp_c2_17922",2,"2",36374598,NA,NA, 98.62,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17921",2,"2",36375406,NA,NA, 98.62,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17914",2,"2",36422560,NA,NA,100.07,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_17901",2,"2",36454929,NA,NA,101.33,2,1,1,0,0,1,1,0,0,0
     "solcap_snp_c2_17900",2,"2",36455067,NA,NA,101.95,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17899",2,"2",36455154,NA,NA,101.96,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17897",2,"2",36455571,NA,NA,101.96,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_17896",2,"2",36455607,NA,NA,101.96,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17895",2,"2",36455817,NA,NA,103.63,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_17816",2,"2",36728687,NA,NA,103.78,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_17809",2,"2",36799097,NA,NA,103.79,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_5846",2,"2",36959231,NA,NA,104.26,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_5845",2,"2",36959234,NA,NA,105.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_49495",2,"2",37017828,NA,NA,105.32,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c2_42169",2,"2",37438591,NA,NA,105.32,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_42172",2,"2",37439183,NA,NA,105.33,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c1_16170",2,"2",37474563,NA,NA,105.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_55632",2,"2",37474656,NA,NA,105.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_16171",2,"2",37475069,NA,NA,105.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_12373",2,"2",37530401,NA,NA,105.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_12382",2,"2",37654438,NA,NA,105.83,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_42241",2,"2",37676252,NA,NA,106.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35211",2,"2",37831945,NA,NA,106.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_10494",2,"2",37845965,NA,NA,106.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_10492",2,"2",37890758,NA,NA,106.83,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_10491",2,"2",37903554,NA,NA,107.24,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_35165",2,"2",37982943,NA,NA,108.38,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35139",2,"2",38046886,NA,NA,108.38,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_35113",2,"2",38121156,NA,NA,108.80,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_15466",2,"2",38386450,NA,NA,109.46,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53037",2,"2",38688112,NA,NA,109.46,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53036",2,"2",38688195,NA,NA,109.47,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53034",2,"2",38688354,NA,NA,109.47,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53033",2,"2",38688468,NA,NA,109.88,2,1,1,0,0,1,0,1,0,0
     "solcap_snp_c1_11955",2,"2",38837510,NA,NA,112.32,2,1,1,1,0,0,0,1,0,0
     "solcap_snp_c2_40635",2,"2",39073404,NA,NA,113.50,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_40638",2,"2",39073700,NA,NA,115.75,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42132",2,"2",39144989,NA,NA,115.75,1,3,0,0,1,0,1,0,1,1
     "solcap_snp_c2_42133",2,"2",39144999,NA,NA,115.75,1,3,0,0,1,0,1,0,1,1
     "solcap_snp_c2_42126",2,"2",39369111,NA,NA,115.80,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_42127",2,"2",39369213,NA,NA,115.80,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c1_8113",2,"2",39934151,NA,NA,120.10,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_8118",2,"2",39940655,NA,NA,120.12,2,3,0,0,1,1,1,0,1,1
     "solcap_snp_c1_8125",2,"2",39970010,NA,NA,120.19,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_25892",2,"2",40044441,NA,NA,122.61,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_25896",2,"2",40132579,NA,NA,122.66,3,3,1,0,1,1,1,0,1,1
     "solcap_snp_c2_25897",2,"2",40132705,NA,NA,122.66,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_25179",2,"2",40294633,NA,NA,123.40,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_7964",2,"2",40294982,NA,NA,126.16,3,3,1,1,1,0,1,1,0,1
     "solcap_snp_c2_7555",2,"2",41356969,NA,NA,128.16,0,2,0,0,0,0,0,1,1,0
     "solcap_snp_c2_7558",2,"2",41357718,NA,NA,128.59,0,2,0,0,0,0,0,1,1,0
     "solcap_snp_c2_7559",2,"2",41357748,NA,NA,128.59,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_7565",2,"2",41368149,NA,NA,129.00,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c1_2632",2,"2",41745246,NA,NA,130.15,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_2640",2,"2",41814961,NA,NA,130.65,2,3,0,0,1,1,1,1,1,0
     "solcap_snp_c1_2641",2,"2",41814973,NA,NA,131.72,2,1,0,0,1,1,1,0,0,0
     "solcap_snp_c1_2656",2,"2",41911152,NA,NA,133.37,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c1_2574",2,"2",42014614,NA,NA,133.68,2,3,1,1,0,0,0,1,1,1
     "solcap_snp_c2_7401",2,"2",42083055,NA,NA,136.14,3,3,0,1,1,1,1,0,1,1
     "solcap_snp_c2_7422",2,"2",42178610,NA,NA,137.92,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c1_2587",2,"2",42179852,NA,NA,138.59,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_7426",2,"2",42180225,NA,NA,139.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_57421",2,"2",42320846,NA,NA,141.09,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_16540",2,"2",42320852,NA,NA,141.19,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_15746",2,"2",42346419,NA,NA,142.45,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_22939",2,"2",42474531,NA,NA,144.58,2,1,1,1,0,0,0,0,0,1
     "solcap_snp_c1_7346",2,"2",42597250,NA,NA,146.12,2,2,1,1,0,0,1,0,0,1
     "solcap_snp_c2_22853",2,"2",42733575,NA,NA,146.95,3,2,0,1,1,1,0,1,1,0
     "solcap_snp_c1_7325",2,"2",42764357,NA,NA,147.64,1,1,1,0,0,0,0,0,0,1
     "solcap_snp_c2_27216",2,"2",43804789,NA,NA,152.13,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_27372",2,"2",44159308,NA,NA,155.23,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_27270",2,"2",44458161,NA,NA,155.71,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_27269",2,"2",44458317,NA,NA,155.71,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_27271",2,"2",44458644,NA,NA,158.41,2,3,0,0,1,1,1,1,0,1
     "solcap_snp_c1_8490",2,"2",44698531,NA,NA,160.85,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_43350",2,"2",44773146,NA,NA,162.25,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_43348",2,"2",44773305,NA,NA,163.47,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_12771",2,"2",44810386,NA,NA,164.70,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_43408",2,"2",44944594,NA,NA,164.70,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_12509",2,"2",45147157,NA,NA,165.43,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_42570",2,"2",45147640,NA,NA,165.43,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_14981",2,"2",45458650,NA,NA,168.41,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c1_4826",2,"2",45458875,NA,NA,168.42,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_4847",2,"2",45616677,NA,NA,168.43,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_15018",2,"2",45618297,NA,NA,170.53,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c1_4849",2,"2",45618958,NA,NA,170.88,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_15041",2,"2",45652545,NA,NA,172.61,2,3,0,0,1,1,1,1,0,1
     "solcap_snp_c2_15042",2,"2",45652553,NA,NA,175.68,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_15046",2,"2",45652811,NA,NA,175.68,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_15047",2,"2",45652877,NA,NA,176.03,1,1,0,1,0,0,0,1,0,0
     "solcap_snp_c2_15048",2,"2",45652958,NA,NA,176.28,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_15065",2,"2",45694316,NA,NA,176.45,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c1_4860",2,"2",45695631,NA,NA,176.60,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_15066",2,"2",45695637,NA,NA,176.76,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_4873",2,"2",45744372,NA,NA,176.88,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_4881",2,"2",45756458,NA,NA,176.88,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_7873",2,"2",46195290,NA,NA,177.44,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_7872",2,"2",46195303,NA,NA,178.19,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_7867",2,"2",46196437,NA,NA,179.89,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c1_7848",2,"2",46291502,NA,NA,179.89,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c1_7834",2,"2",46384191,NA,NA,181.66,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_24869",2,"2",46387342,NA,NA,182.20,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_47211",2,"2",46940997,NA,NA,182.20,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_47197",2,"2",47137310,NA,NA,184.36,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_47199",2,"2",47137738,NA,NA,184.36,3,3,1,0,1,1,1,0,1,1
     "solcap_snp_c2_47200",2,"2",47137863,NA,NA,187.30,2,0,0,0,1,1,0,0,0,0
     "solcap_snp_c2_47201",2,"2",47141179,NA,NA,188.15,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_10607",2,"2",47182635,NA,NA,189.23,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_10593",2,"2",47302272,NA,NA,193.87,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_35686",2,"2",47323948,NA,NA,193.87,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35687",2,"2",47324096,NA,NA,193.87,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35690",2,"2",47324235,NA,NA,193.87,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_35691",2,"2",47324287,NA,NA,194.70,0,3,0,0,0,0,1,1,0,1
     "solcap_snp_c2_35692",2,"2",47325069,NA,NA,194.70,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_35697",2,"2",47325513,NA,NA,195.66,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_35700",2,"2",47326506,NA,NA,196.63,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_35701",2,"2",47327334,NA,NA,196.63,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_35702",2,"2",47327423,NA,NA,196.63,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_35706",2,"2",47327566,NA,NA,197.84,1,1,0,1,0,0,0,1,0,0
     "solcap_snp_c1_11458",2,"2",47625835,NA,NA,200.53,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c1_11459",2,"2",47625847,NA,NA,201.80,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_38551",2,"2",47627255,NA,NA,201.81,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_38552",2,"2",47627384,NA,NA,201.81,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_38553",2,"2",47627420,NA,NA,201.95,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_38555",2,"2",47627603,NA,NA,202.72,1,2,0,1,0,0,1,0,0,1
     "solcap_snp_c1_5931",2,"2",48498256,NA,NA,206.31,2,3,1,1,0,0,1,0,1,1
     "solcap_snp_c1_5895",2,"2",48565009,NA,NA,206.32,1,1,1,0,0,0,0,0,1,0
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.001 0.005
     Iter: 2 0.024 0.000 0.001 0.007
     Iter: 3 0.028 0.000 0.000 0.008
     Iter: 4 0.030 0.000 0.000 0.008
     Iter: 5 0.030 0.000 0.000 0.008
     Iter: 6 0.031 0.000 0.000 0.008
     Iter: 7 0.031 0.000 0.000 0.008
     Iter: 8 0.031 0.000 0.000 0.008
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
    
     Linkage group 1 ...
     INFO: Going singlemode. Using one CPU for calculation.
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
    
     Linkage group 1 ...
     trying URL 'https://github.com/mmollina/MAPpoly_vignettes/raw/master/data/sweet_sample_ch3.vcf.gz'
     Content type 'text/plain; charset=utf-8' length 1416917 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading data...
     Scanning file to determine attributes.
     File attributes:
     meta lines: 8
     header_line: 9
     variant count: 200
     column count: 326
    
     Meta line 8 read in.
     All meta lines processed.
     gt matrix initialized.
     Character matrix gt created.
     Character matrix gt rows: 200
     Character matrix gt cols: 326
     skip: 0
     nrows: 200
     row_num: 0
    
     Processed variant: 200
     All variants processed
     Processing genotypes...Done!
     Selected ploidy: 6
     Done!
     Read the following data:
     Ploidy level: 6
     No. individuals: 315
     No. markers: 167
     No. informative markers: 167 (100%)
     This dataset contains chromosome information.
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     This is an object of class 'mappoly.data'
     Ploidy level: 6
     No. individuals: 315
     No. markers: 164
     Missing data under prob. threshold: 6.01%
     Redundant markers: 1.8%
    
     No. markers per chromosome: not available
     ----------
     No. of markers per dosage combination in both parents:
     P1 P2 freq
     0 1 50
     0 2 8
     0 3 4
     0 4 1
     1 0 26
     1 1 12
     1 2 9
     1 3 4
     1 4 1
     2 0 3
     2 1 10
     2 2 7
     2 3 7
     2 4 4
     3 0 3
     3 1 3
     3 2 7
     3 3 1
     4 0 1
     4 1 2
     4 2 1
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/SolCAP_dosage'
     Content type 'text/plain; charset=utf-8' length 1445956 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 160
     No. markers: 4017
     No. informative markers: 4017 (100%)
     ...
    
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/hexa_sample'
     Content type 'text/plain; charset=utf-8' length 142904 bytes (139 KB)
     ==================================================
     downloaded 139 KB
    
     Reading the following data:
     Ploidy level: 6
     No. individuals: 50
     No. markers: 100
     No. informative markers: 71 (71%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/tetra_solcap.csv'
     Content type 'text/plain; charset=utf-8' length 1448564 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 160
     No. markers: 4017
     No. informative markers: 4017 (100%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Done with filtering.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/fitpoly.dat'
     Content type 'text/plain; charset=utf-8' length 3563386 bytes (3.4 MB)
     ==================================================
     downloaded 3.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 150
     No. markers: 145
     No. informative markers: 138 (95.2%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     This is an object of class 'mappoly.data'
     Ploidy level: 4
     No. individuals: 150
     No. markers: 138
     Missing data: 3.89%
    
     No. markers per chromosome: not available
     ----------
     No. of markers per dosage combination in both parents:
     P1 P2 freq
     0 1 18
     0 2 24
     1 0 18
     1 1 19
     1 2 10
     1 3 3
     2 0 13
     2 1 6
     2 2 15
     2 3 2
     3 1 1
     3 2 5
     3 3 2
     3 4 1
     4 2 1
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007
     Iter: 1 0.031 0.000 0.000 0.008
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 20
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.002 0.006 0.006 0.007 0.006 0.011 0.008 0.004 0.003 0.001 0.004 0.001 0.003 0.007 0.009 0.009 0.000
     Iter: 2 0.024 0.000 0.001 0.007 0.007 0.009 0.006 0.014 0.010 0.004 0.003 0.001 0.004 0.001 0.004 0.009 0.013 0.016 0.000
     Iter: 3 0.028 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.001 0.004 0.009 0.016 0.020 0.000
     Iter: 4 0.029 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.004 0.008 0.018 0.024 0.000
     Iter: 5 0.030 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.008 0.020 0.027 0.000
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.007 0.021 0.029 0.000
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.006 0.021 0.031 0.000
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.005 0.022 0.032 0.000
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.004 0.022 0.033 0.000
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.004 0.022 0.034 0.000
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.035 0.000
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.035 0.000
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.036 0.000
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.036 0.000
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.001 0.024 0.037 0.000
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.001 0.024 0.037 0.000
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.037 0.000
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.037 0.000
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.038 0.000
     Iter: 23 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.038 0.000
     INFO: Going singlemode. Using one CPU for calculation.
     2 submaps found ...
     adding block 2 of 2
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
    
     M_1
     ----------------------------------
     dosage P1: 1
     dosage P2: 2
     ----
     dosage distribution
     0 1 2 3 mis
     23 120 126 31 0
     ----
     expected polysomic segregation
     0 1 2 3 4 5 6
     0.1 0.4 0.4 0.1 0.0 0.0 0.0
     ----------------------------------
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.017 0.010
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.029 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010
     Iter: 1 0.030 0.000 0.000 0.007 0.007 0.009 0.006 0.017 0.010
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.006 0.006 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.014
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.012
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.010
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.010
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.009
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.009
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 23 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 24 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Updating map 1
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 127 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test-cahe_twopts.R:8:3): compute genotype counts correctly ───────────
     Error in `get_cache_two_pts_from_web(ploidy = 4)`: Cache file not found. Try to use get.from.web = FALSE
     Backtrace:
     ▆
     1. └─mappoly::get_cache_two_pts_from_web(ploidy = 4) at test-cahe_twopts.R:8:2
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 127 ]
     Error: Test failures
     Execution halted
Flavor: r-release-linux-x86_64

Version: 0.3.0
Check: running tests for arch ‘i386’
Result: ERROR
     Running 'testthat.R' [163s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > if(requireNamespace("testthat", quietly = TRUE)){
     + library(testthat)
     + library(mappoly)
     + test_check("mappoly")
     + }
     =====================================================
     MAPpoly Package [Version 0.3.02022-01-11 09:22:41 UTC]
     More information: https://github.com/mmollina/MAPpoly
     =====================================================
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     INFO: Going singlemode. Using one CPU.
     Stress: 0.30318
     Mean Nearest Neighbour Fit: 6.18154INFO: Using 2 CPUs for calculation.
     INFO: Done with 2701 pairs of markers
     INFO: Calculation took: 9.72 seconds
     INFO: Using 2 CPUs for calculation.
     INFO: Done with 2701 pairs of markers
     INFO: Calculation took: 11.7 seconds
     Going RcppParallel mode.
     ...
     Done with pairwise computation.
     ~~~~~~~
     Reorganizing results
     ...
     Caching the following dosage combination:
     P.k P.k+1 Q.k Q.k+1
     Conf.1 3 0 2 1
     Conf.2 3 3 2 2
     Conf.3 3 4 2 3
     Conf.4 4 0 3 1
     Conf.5 4 3 3 2
     Conf.6 4 4 3 3
     INFO: Going singlemode. Using one Core/CPU/PC for calculation.
     INFO: Done with 6 phase configurations
     INFO: Calculation took: 0.49 seconds
     This is an object of class 'cache.info'
     -----------------------------------------------------
     Ploidy level: 4
     No. marker combinations: 625
     -----------------------------------------------------
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
     Ploidy level:4
     Number of individuals:160
     ..................................................
     ..................................................
     ..................................................
     ..........
     Ploidy level:4
     Number of individuals:160
     ..................................................
     ..................................................
     ..................................................
     ..........
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     This is an object of class 'mappoly.map'
     Ploidy level: 4
     No. individuals: 160
     No. markers: 5
     No. linkage phases: 1
    
     ---------------------------------------------
     Linkage phase configuration: 1
     log-likelihood: -123.7037
     LOD: 0
    
     a b c d e f g h
     solcap_snp_c2_4408 o o o o o o o | 0.0
     solcap_snp_c2_21332 o o o | o o | | 0.7
     solcap_snp_c2_21314 o o o o o o o | 0.8
     solcap_snp_c2_4437 o o o | o o | | 0.9
     solcap_snp_c2_6674 | | | | | | | o 0.9
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     Number of markers: 5
     4 markers...
     * Trying sequence: 1 2 3 4 :
     1 phase(s): .
     5/5:(100%) 7: 1 ph (1/1) -- tail: 4 |||| |||*
     Markers in the initial sequence: 5
     Mapped markers : 5 (100%)
     Number of markers: 5
     4 markers...
     * Trying sequence: 1 2 3 4 :
     1 phase(s): .
     5/5:(100%) 7: 1 ph (1/1) -- tail: 4 |||| |||*
     Markers in the initial sequence: 5
     Mapped markers : 5 (100%)
     Ploidy level: 4
     Rec. Frac. Limit: 0.5
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.019 0.007 0.012 0.007
     Iter: 2 0.028 0.006 0.015 0.008
     Iter: 3 0.032 0.005 0.016 0.009
     Iter: 4 0.034 0.005 0.017 0.010
     Iter: 5 0.036 0.004 0.017 0.011
     Iter: 6 0.036 0.004 0.017 0.011
     Iter: 7 0.037 0.003 0.017 0.012
     Iter: 8 0.037 0.003 0.017 0.013
     Iter: 9 0.037 0.003 0.016 0.013
     Iter: 10 0.037 0.002 0.016 0.014
     Iter: 11 0.037 0.002 0.016 0.014
     Iter: 12 0.037 0.002 0.016 0.014
     Iter: 13 0.037 0.002 0.016 0.015
     Iter: 14 0.038 0.002 0.016 0.015
     Iter: 15 0.038 0.002 0.016 0.015
     Iter: 16 0.038 0.002 0.016 0.015
     Iter: 17 0.038 0.002 0.016 0.016
     Iter: 18 0.038 0.002 0.016 0.016
     Iter: 19 0.038 0.002 0.016 0.016
     Iter: 20 0.038 0.002 0.016 0.016
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.001 0.005
     Iter: 2 0.024 0.000 0.001 0.007
     Iter: 3 0.028 0.000 0.000 0.008
     Iter: 4 0.030 0.000 0.000 0.008
     Iter: 5 0.030 0.000 0.000 0.008
     Iter: 6 0.031 0.000 0.000 0.008
     Iter: 7 0.031 0.000 0.000 0.008
     Iter: 8 0.031 0.000 0.000 0.008
     "Marker Name","LG","Ref Chrom","Ref Position","Ref Allele","Alt Allele","Map Position","Dose in P1","Dose in P2","ph.P.a","ph.P.b","ph.P.c","ph.P.d","ph.Q.e","ph.Q.f","ph.Q.g","ph.Q.h"
     "solcap_snp_c2_51460",1,"1", 151147,NA,NA, 0.00,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_36608",1,"1", 251032,NA,NA, 3.20,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_36615",1,"1", 252977,NA,NA, 3.21,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_36658",1,"1", 269300,NA,NA, 3.22,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_10930",1,"1", 309242,NA,NA, 3.92,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_36629",1,"1", 433701,NA,NA, 4.62,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_10915",1,"1", 481195,NA,NA, 5.56,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c1_10918",1,"1", 496966,NA,NA, 6.18,1,2,0,1,0,0,0,1,1,0
     "solcap_snp_c2_36650",1,"1", 507322,NA,NA, 7.67,1,2,0,1,0,0,0,1,1,0
     "solcap_snp_c2_36643",1,"1", 508489,NA,NA, 8.71,2,2,0,0,1,1,1,0,0,1
     "solcap_snp_c2_36660",1,"1", 534726,NA,NA, 9.12,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_36664",1,"1", 535354,NA,NA, 9.40,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c2_36686",1,"1", 601257,NA,NA, 9.41,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_54803",1,"1", 811809,NA,NA, 9.92,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c2_54800",1,"1", 813297,NA,NA, 9.93,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c2_54797",1,"1", 817305,NA,NA, 10.46,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_56714",1,"1", 931273,NA,NA, 10.47,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_6865",1,"1", 1513756,NA,NA, 12.72,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_6683",1,"1", 1828357,NA,NA, 15.31,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c1_2417",1,"1", 1838764,NA,NA, 15.32,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_6713",1,"1", 2068205,NA,NA, 15.58,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21098",1,"1", 2589396,NA,NA, 17.78,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21100",1,"1", 2591241,NA,NA, 19.16,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21233",1,"1", 2956217,NA,NA, 21.10,2,1,0,1,0,1,0,1,0,0
     "solcap_snp_c1_6704",1,"1", 2957498,NA,NA, 21.20,1,2,0,0,1,0,0,1,1,0
     "solcap_snp_c2_21236",1,"1", 2958510,NA,NA, 22.07,3,2,0,1,1,1,0,1,1,0
     "solcap_snp_c1_6123",1,"1", 3296081,NA,NA, 25.79,2,2,1,0,1,0,0,1,1,0
     "solcap_snp_c1_6114",1,"1", 3693321,NA,NA, 25.97,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_6109",1,"1", 3716835,NA,NA, 26.67,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_51791",1,"1", 4309511,NA,NA, 31.96,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_49938",1,"1", 4597936,NA,NA, 31.97,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_56125",1,"1", 5291666,NA,NA, 34.56,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_45058",1,"1", 5347412,NA,NA, 35.15,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_45071",1,"1", 5386765,NA,NA, 36.19,3,1,1,1,0,1,1,0,0,0
     "solcap_snp_c2_45064",1,"1", 5502148,NA,NA, 36.69,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_13289",1,"1", 5504921,NA,NA, 36.70,2,3,1,0,0,1,0,1,1,1
     "solcap_snp_c1_13293",1,"1", 5505413,NA,NA, 36.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_27877",1,"1", 6071274,NA,NA, 38.46,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_27878",1,"1", 6071298,NA,NA, 38.47,1,1,0,0,0,1,1,0,0,0
     "solcap_snp_c2_27882",1,"1", 6071676,NA,NA, 38.73,3,1,0,1,1,1,1,0,0,0
     "solcap_snp_c2_27884",1,"1", 6071778,NA,NA, 38.74,3,1,0,1,1,1,1,0,0,0
     "solcap_snp_c2_27885",1,"1", 6071817,NA,NA, 39.13,0,3,0,0,0,0,0,1,1,1
     "solcap_snp_c2_27903",1,"1", 6295642,NA,NA, 40.12,2,3,0,1,0,1,0,1,1,1
     "solcap_snp_c2_27918",1,"1", 6587772,NA,NA, 40.56,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_48155",1,"1", 7165330,NA,NA, 41.98,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_48154",1,"1", 7165840,NA,NA, 42.33,2,3,0,1,0,1,0,1,1,1
     "solcap_snp_c2_50011",1,"1", 7446981,NA,NA, 42.34,2,3,1,0,1,0,0,1,1,1
     "solcap_snp_c1_16312",1,"1", 7641280,NA,NA, 43.72,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52709",1,"1", 8645609,NA,NA, 44.63,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52712",1,"1", 8645693,NA,NA, 44.64,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52705",1,"1", 8653609,NA,NA, 45.12,2,1,0,1,0,1,0,1,0,0
     "solcap_snp_c2_48549",1,"1",10570936,NA,NA, 52.54,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_48563",1,"1",10573573,NA,NA, 52.55,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_55639",1,"1",11235975,NA,NA, 52.56,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_56356",1,"1",11737675,NA,NA, 52.57,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_56359",1,"1",11742617,NA,NA, 52.81,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_57284",1,"1",11774518,NA,NA, 53.18,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_45637",1,"1",12022263,NA,NA, 53.55,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_55008",1,"1",12994177,NA,NA, 57.69,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_53521",1,"1",13266849,NA,NA, 57.70,2,2,0,1,0,1,0,0,1,1
     "solcap_snp_c2_43984",1,"1",13369857,NA,NA, 57.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_12938",1,"1",13392343,NA,NA, 58.21,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_43970",1,"1",13545289,NA,NA, 59.61,1,1,0,1,0,0,0,0,1,0
     "solcap_snp_c2_43973",1,"1",13547044,NA,NA, 60.07,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c1_8908",1,"1",13656016,NA,NA, 60.91,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_54355",1,"1",13740719,NA,NA, 63.95,2,2,1,0,1,0,0,1,0,1
     "solcap_snp_c2_54353",1,"1",13747285,NA,NA, 66.18,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_49867",1,"1",16399117,NA,NA, 66.19,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_48568",1,"1",17370536,NA,NA, 66.20,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c1_8593",1,"1",17664021,NA,NA, 66.21,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_53759",1,"1",18753871,NA,NA, 66.22,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_56842",1,"1",18925684,NA,NA, 66.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c1_16421",1,"1",18926984,NA,NA, 66.59,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_14663",1,"1",19664067,NA,NA, 66.71,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_49326",1,"1",20549734,NA,NA, 68.28,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c1_5477",1,"1",23657080,NA,NA, 68.29,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_43643",1,"1",29180891,NA,NA, 69.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_22549",1,"1",29678234,NA,NA, 69.24,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_22546",1,"1",29679750,NA,NA, 69.25,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_7136",1,"1",30125081,NA,NA, 69.59,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_11066",1,"1",32091982,NA,NA, 69.93,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_9378",1,"1",34098178,NA,NA, 70.23,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_27683",1,"1",37067385,NA,NA, 70.27,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_27677",1,"1",37071329,NA,NA, 70.59,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42829",1,"1",38478335,NA,NA, 71.26,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_15714",1,"1",39325633,NA,NA, 71.51,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_45395",1,"1",39529256,NA,NA, 71.81,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_49732",1,"1",41859322,NA,NA, 73.88,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_14648",1,"1",41947283,NA,NA, 73.89,4,1,1,1,1,1,0,1,0,0
     "solcap_snp_c1_14654",1,"1",41979022,NA,NA, 73.90,4,1,1,1,1,1,0,1,0,0
     "solcap_snp_c2_32111",1,"1",42197632,NA,NA, 73.91,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_32112",1,"1",42197668,NA,NA, 74.94,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_50028",1,"1",43180567,NA,NA, 76.56,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_50023",1,"1",43196126,NA,NA, 77.18,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_49042",1,"1",43330828,NA,NA, 78.19,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_16169",1,"1",44194024,NA,NA, 81.89,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_14248",1,"1",44696488,NA,NA, 81.90,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c1_14249",1,"1",44696500,NA,NA, 82.40,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_14259",1,"1",44700858,NA,NA, 82.41,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_14261",1,"1",44702300,NA,NA, 82.42,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c2_53708",1,"1",44890351,NA,NA, 83.08,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_40131",1,"1",45751390,NA,NA, 83.09,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_54811",1,"1",46271054,NA,NA, 83.10,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_15855",1,"1",46323471,NA,NA, 83.11,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_35220",1,"1",47299682,NA,NA, 83.12,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_35218",1,"1",47300005,NA,NA, 83.13,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_35601",1,"1",50791085,NA,NA, 85.14,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_694",1,"1",51290105,NA,NA, 85.74,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_686",1,"1",51324458,NA,NA, 85.80,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c2_57898",1,"1",51736618,NA,NA, 85.81,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_880",1,"1",54480981,NA,NA, 86.14,4,3,1,1,1,1,1,1,1,0
     "solcap_snp_c2_55113",1,"1",54580381,NA,NA, 86.15,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_2874",1,"1",55163851,NA,NA, 86.16,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_55621",1,"1",55427211,NA,NA, 86.17,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_55618",1,"1",55427602,NA,NA, 86.35,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c1_14633",1,"1",57931788,NA,NA, 91.38,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_2721",1,"1",58197548,NA,NA, 91.39,1,1,0,0,0,1,1,0,0,0
     "solcap_snp_c2_2653",1,"1",58737622,NA,NA, 92.93,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_2591",1,"1",58985511,NA,NA, 93.92,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_13430",1,"1",59363361,NA,NA, 95.09,1,3,0,1,0,0,1,0,1,1
     "solcap_snp_c2_46523",1,"1",59973949,NA,NA, 95.82,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_46521",1,"1",59974282,NA,NA, 95.83,2,3,1,0,1,0,1,1,1,0
     "solcap_snp_c2_46520",1,"1",59974316,NA,NA, 95.84,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_53347",1,"1",60026944,NA,NA, 96.47,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_35511",1,"1",60433785,NA,NA, 96.48,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35518",1,"1",60512480,NA,NA, 96.49,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35520",1,"1",60513199,NA,NA, 96.50,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35536",1,"1",60515867,NA,NA, 97.95,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_35537",1,"1",60516874,NA,NA, 97.96,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_43926",1,"1",60887837,NA,NA, 98.27,2,2,0,1,0,1,1,0,0,1
     "solcap_snp_c2_56267",1,"1",60919490,NA,NA, 99.07,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c2_20798",1,"1",60951573,NA,NA, 99.08,2,2,1,1,0,0,0,1,1,0
     "solcap_snp_c2_20799",1,"1",60951606,NA,NA, 99.29,2,2,0,0,1,1,1,0,0,1
     "solcap_snp_c2_20803",1,"1",60987155,NA,NA, 99.52,1,2,0,0,0,1,1,0,0,1
     "solcap_snp_c2_20890",1,"1",61310805,NA,NA,101.03,3,3,1,1,1,0,1,1,1,0
     "solcap_snp_c2_50903",1,"1",61774492,NA,NA,101.77,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_38428",1,"1",62058660,NA,NA,102.74,1,1,0,0,0,1,0,0,0,1
     "solcap_snp_c2_38406",1,"1",62144916,NA,NA,103.16,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_38404",1,"1",62148178,NA,NA,103.17,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c2_38448",1,"1",62289476,NA,NA,104.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_12106",1,"1",62802674,NA,NA,106.27,1,3,0,0,0,1,1,0,1,1
     "solcap_snp_c2_41337",1,"1",62930793,NA,NA,106.84,1,3,0,0,0,1,1,0,1,1
     "solcap_snp_c2_32359",1,"1",63208419,NA,NA,108.73,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_9679",1,"1",63338027,NA,NA,110.16,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_12057",1,"1",63596472,NA,NA,111.12,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_13686",1,"1",64120988,NA,NA,113.01,2,3,0,0,1,1,1,0,1,1
     "solcap_snp_c2_46195",1,"1",64259858,NA,NA,113.66,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_13751",1,"1",64614114,NA,NA,113.95,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_4415",1,"1",65036984,NA,NA,116.70,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c2_13675",1,"1",65036993,NA,NA,116.94,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_13676",1,"1",65054301,NA,NA,116.95,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_13671",1,"1",65062849,NA,NA,116.96,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c2_13653",1,"1",65270150,NA,NA,117.37,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c2_13650",1,"1",65277543,NA,NA,117.38,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_4744",1,"1",65472678,NA,NA,118.20,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_14467",1,"1",65694581,NA,NA,118.81,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14470",1,"1",65697018,NA,NA,118.83,2,4,1,0,0,1,1,1,1,1
     "solcap_snp_c1_4706",1,"1",65780052,NA,NA,119.64,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14487",1,"1",65780861,NA,NA,119.65,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14489",1,"1",65781907,NA,NA,119.66,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14491",1,"1",65782311,NA,NA,119.69,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_14492",1,"1",65782372,NA,NA,119.70,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_14493",1,"1",65782860,NA,NA,120.27,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_4745",1,"1",66094082,NA,NA,123.09,2,2,1,0,0,1,1,1,0,0
     "solcap_snp_c1_4748",1,"1",66259325,NA,NA,123.10,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14589",1,"1",66283156,NA,NA,123.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_37564",1,"1",66307265,NA,NA,123.24,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_14595",1,"1",66307870,NA,NA,123.66,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_37566",1,"1",66307870,NA,NA,123.67,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_4752",1,"1",66336597,NA,NA,124.20,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14608",1,"1",66349497,NA,NA,124.47,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_4757",1,"1",66354237,NA,NA,124.83,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_4763",1,"1",66376115,NA,NA,124.84,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c1_5150",1,"1",66675718,NA,NA,127.51,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_58099",1,"1",66845540,NA,NA,127.69,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_5145",1,"1",66904071,NA,NA,127.70,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_20569",1,"1",67013419,NA,NA,132.36,3,1,1,1,1,0,0,0,1,0
     "solcap_snp_c2_20501",1,"1",67211402,NA,NA,136.36,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c2_20502",1,"1",67221811,NA,NA,137.02,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c2_20505",1,"1",67223365,NA,NA,138.09,3,2,0,1,1,1,0,0,1,1
     "solcap_snp_c2_20506",1,"1",67223618,NA,NA,139.27,3,3,0,1,1,1,1,0,1,1
     "solcap_snp_c2_20508",1,"1",67224636,NA,NA,139.92,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_20513",1,"1",67277917,NA,NA,140.32,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_20521",1,"1",67293276,NA,NA,140.85,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_20522",1,"1",67294203,NA,NA,141.34,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_6501",1,"1",67459562,NA,NA,142.30,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_6518",1,"1",67605601,NA,NA,142.31,2,2,0,1,0,1,0,0,1,1
     "solcap_snp_c2_13766",1,"1",67896690,NA,NA,142.32,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_52492",1,"1",67969508,NA,NA,143.43,3,2,1,1,0,1,0,0,1,1
     "solcap_snp_c2_52484",1,"1",68069976,NA,NA,144.07,1,2,0,0,1,0,1,1,0,0
     "solcap_snp_c2_49451",1,"1",68416146,NA,NA,145.42,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_14044",1,"1",68529607,NA,NA,146.51,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_51055",1,"1",68950490,NA,NA,147.79,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c1_11769",1,"1",69200071,NA,NA,148.59,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_39834",1,"1",69381232,NA,NA,149.22,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_17592",1,"1",69809943,NA,NA,150.28,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_17529",1,"1",69902111,NA,NA,150.29,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_17531",1,"1",70016341,NA,NA,151.13,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_17537",1,"1",70097616,NA,NA,151.14,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c1_15579",1,"1",70341165,NA,NA,151.68,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c1_15580",1,"1",70341195,NA,NA,151.91,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c2_53380",1,"1",70371798,NA,NA,152.63,3,2,0,1,1,1,0,0,1,1
     "solcap_snp_c2_53381",1,"1",70372029,NA,NA,153.40,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c2_17191",1,"1",70474751,NA,NA,153.41,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_5657",1,"1",70560319,NA,NA,154.13,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c1_5656",1,"1",70562884,NA,NA,154.14,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_5653",1,"1",70697401,NA,NA,154.15,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_3860",1,"1",71009488,NA,NA,155.37,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c1_3863",1,"1",71009686,NA,NA,156.05,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_12076",1,"1",71090664,NA,NA,156.55,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_3867",1,"1",71239298,NA,NA,157.43,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_3868",1,"1",71239559,NA,NA,157.65,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_3876",1,"1",71278255,NA,NA,158.09,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_12106",1,"1",71298195,NA,NA,158.31,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_3894",1,"1",71421320,NA,NA,158.74,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_12126",1,"1",71450592,NA,NA,159.39,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_12216",1,"1",72051429,NA,NA,160.94,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_12217",1,"1",72051456,NA,NA,160.97,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_3848",1,"1",72108418,NA,NA,160.98,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_3851",1,"1",72112064,NA,NA,160.99,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_9565",1,"1",72320561,NA,NA,162.31,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_9566",1,"1",72320582,NA,NA,162.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_9573",1,"1",72504567,NA,NA,162.33,2,2,0,1,1,0,0,0,1,1
     "solcap_snp_c2_31820",1,"1",72528671,NA,NA,163.44,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_31821",1,"1",72531263,NA,NA,163.45,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_9583",1,"1",72540600,NA,NA,163.66,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c1_9587",1,"1",72541075,NA,NA,163.67,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_14274",1,"1",74061621,NA,NA,166.55,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c1_4617",1,"1",74355434,NA,NA,168.09,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_14365",1,"1",74688262,NA,NA,168.11,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14366",1,"1",74688318,NA,NA,168.54,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c1_14931",1,"1",75007319,NA,NA,168.55,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_16369",1,"1",75164058,NA,NA,169.98,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c1_5267",1,"1",75333553,NA,NA,170.01,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_5281",1,"1",75441912,NA,NA,170.02,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_5286",1,"1",75477570,NA,NA,170.90,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_16424",1,"1",75478258,NA,NA,171.43,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_16425",1,"1",75485276,NA,NA,171.73,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_16466",1,"1",75749019,NA,NA,171.74,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c1_5346",1,"1",75789912,NA,NA,172.18,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_16435",1,"1",76304406,NA,NA,172.61,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c2_2509",1,"1",76406745,NA,NA,172.62,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_2291",1,"1",76480645,NA,NA,173.91,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_641",1,"1",76511147,NA,NA,173.93,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_2420",1,"1",76953005,NA,NA,175.04,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_2423",1,"1",76958677,NA,NA,175.41,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_2424",1,"1",76960116,NA,NA,176.33,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_2427",1,"1",76960344,NA,NA,177.73,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c2_2450",1,"1",77056087,NA,NA,177.96,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2463",1,"1",77190863,NA,NA,178.95,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2464",1,"1",77190891,NA,NA,178.96,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2466",1,"1",77191250,NA,NA,179.19,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2505",1,"1",77350779,NA,NA,179.67,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_2508",1,"1",77353050,NA,NA,180.18,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_758",1,"1",77526728,NA,NA,180.52,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_2201",1,"1",77738922,NA,NA,180.88,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_601",1,"1",78168030,NA,NA,182.58,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_607",1,"1",78176086,NA,NA,182.59,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2299",1,"1",78192398,NA,NA,183.05,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_2354",1,"1",78430745,NA,NA,183.73,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_50486",1,"1",78756800,NA,NA,184.18,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50484",1,"1",78757017,NA,NA,184.41,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50483",1,"1",78757327,NA,NA,184.64,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50502",1,"1",78809381,NA,NA,184.88,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c1_15872",1,"1",78928170,NA,NA,185.35,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_7007",1,"1",79083850,NA,NA,189.67,2,2,1,0,1,0,0,1,1,0
     "solcap_snp_c1_2484",1,"1",79157311,NA,NA,193.43,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_7094",1,"1",79187093,NA,NA,193.46,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_7193",1,"1",79391798,NA,NA,193.94,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_7208",1,"1",79456001,NA,NA,197.09,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c1_2519",1,"1",79487369,NA,NA,197.10,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c1_2520",1,"1",79487485,NA,NA,197.40,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_7241",1,"1",79678600,NA,NA,197.59,3,3,1,1,0,1,1,0,1,1
     "solcap_snp_c2_7242",1,"1",79679061,NA,NA,197.60,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_7245",1,"1",79679433,NA,NA,197.96,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_7246",1,"1",79679919,NA,NA,198.32,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c1_2531",1,"1",79711129,NA,NA,198.33,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_7328",1,"1",79955769,NA,NA,199.81,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_6990",1,"1",80077222,NA,NA,200.92,2,3,1,0,0,1,0,1,1,1
     "solcap_snp_c1_2458",1,"1",80121157,NA,NA,200.93,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_7053",1,"1",80228512,NA,NA,202.00,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7055",1,"1",80229751,NA,NA,203.13,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7056",1,"1",80229823,NA,NA,203.59,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_7061",1,"1",80230621,NA,NA,204.94,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7062",1,"1",80230636,NA,NA,204.95,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c1_1853",1,"1",80429124,NA,NA,205.22,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_5091",1,"1",80558977,NA,NA,206.13,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_5077",1,"1",80591992,NA,NA,207.68,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_5078",1,"1",80592039,NA,NA,208.01,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_5039",1,"1",80669402,NA,NA,209.26,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_9727",1,"1",80833354,NA,NA,209.27,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_9726",1,"1",80833555,NA,NA,209.28,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_9722",1,"1",80835882,NA,NA,209.91,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_9988",1,"1",81013079,NA,NA,212.06,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_9925",1,"1",81410356,NA,NA,212.44,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_9892",1,"1",81567397,NA,NA,215.81,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_9864",1,"1",81615881,NA,NA,215.82,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c1_3275",1,"1",81750527,NA,NA,217.23,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_3255",1,"1",81795335,NA,NA,217.88,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c1_3241",1,"1",81924813,NA,NA,219.27,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_3234",1,"1",81927346,NA,NA,219.38,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_47360",1,"1",82220028,NA,NA,221.34,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4896",1,"1",82628961,NA,NA,222.55,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_4799",1,"1",82927941,NA,NA,222.86,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_1638",1,"1",82935846,NA,NA,222.87,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_1653",1,"1",83012188,NA,NA,225.35,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c1_1683",1,"1",83059366,NA,NA,226.88,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4844",1,"1",83060466,NA,NA,227.75,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c2_4845",1,"1",83060720,NA,NA,229.69,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4860",1,"1",83130390,NA,NA,229.71,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_4864",1,"1",83138355,NA,NA,230.11,2,4,0,1,0,1,1,1,1,1
     "solcap_snp_c2_4875",1,"1",83177618,NA,NA,231.71,3,1,1,1,1,0,1,0,0,0
     "solcap_snp_c2_4884",1,"1",83186994,NA,NA,232.67,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_4885",1,"1",83187000,NA,NA,232.90,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_4898",1,"1",83283573,NA,NA,232.91,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4904",1,"1",83416355,NA,NA,234.34,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4907",1,"1",83418574,NA,NA,236.34,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4910",1,"1",83419340,NA,NA,237.80,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_1737",1,"1",83602469,NA,NA,238.45,2,3,0,1,0,1,1,0,1,1
     "solcap_snp_c1_1739",1,"1",83608625,NA,NA,240.68,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_4614",1,"1",83843457,NA,NA,240.69,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_4664",1,"1",84062694,NA,NA,242.21,1,3,0,0,0,1,0,1,1,1
     "solcap_snp_c2_4708",1,"1",84214693,NA,NA,244.20,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_4713",1,"1",84217673,NA,NA,244.21,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_36495",1,"1",84457206,NA,NA,244.46,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_34546",1,"1",84727952,NA,NA,246.10,1,3,0,0,0,1,0,1,1,1
     "solcap_snp_c1_10354",1,"1",84979069,NA,NA,251.03,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_22",1,"1",85243830,NA,NA,251.60,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_24",1,"1",85323495,NA,NA,255.50,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_13385",1,"1",85715515,NA,NA,256.96,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_46448",1,"1",85760106,NA,NA,256.97,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_53075",1,"1",85902499,NA,NA,257.70,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_42943",1,"1",85953353,NA,NA,258.40,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_49917",1,"1",86090288,NA,NA,258.41,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_49911",1,"1",86095463,NA,NA,258.42,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_49910",1,"1",86095890,NA,NA,258.43,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14839",1,"1",86328984,NA,NA,260.84,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14707",1,"1",86355213,NA,NA,260.85,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14708",1,"1",86356234,NA,NA,262.85,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14709",1,"1",86356378,NA,NA,262.86,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_4796",1,"1",86388041,NA,NA,263.11,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14730",1,"1",86441357,NA,NA,266.54,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14733",1,"1",86527670,NA,NA,267.31,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_4799",1,"1",86663770,NA,NA,269.34,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14761",1,"1",86750111,NA,NA,270.26,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14762",1,"1",86750599,NA,NA,270.54,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14763",1,"1",86847560,NA,NA,270.82,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14764",1,"1",86847664,NA,NA,271.20,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14772",1,"1",86877778,NA,NA,271.58,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14779",1,"1",86887803,NA,NA,274.05,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_4803",1,"1",86942483,NA,NA,276.39,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14827",1,"1",87096629,NA,NA,277.06,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14840",1,"1",87161581,NA,NA,278.23,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_14841",1,"1",87161695,NA,NA,279.54,3,3,1,0,1,1,0,1,1,1
     "solcap_snp_c2_14848",1,"1",87196823,NA,NA,280.06,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c2_37836",1,"1",87392825,NA,NA,282.11,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_37820",1,"1",87463711,NA,NA,282.12,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_11288",1,"1",87558384,NA,NA,282.13,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_11308",1,"1",87663528,NA,NA,287.31,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_37850",1,"1",87731594,NA,NA,287.32,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_37816",1,"1",87746020,NA,NA,288.43,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_9428",1,"1",87944667,NA,NA,298.18,3,1,1,1,1,0,0,1,0,0
     "solcap_snp_c1_9430",1,"1",87965033,NA,NA,302.34,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_22105",1,"1",88057376,NA,NA,306.51,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_9413",1,"1",88294049,NA,NA,309.12,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_9406",1,"1",88347489,NA,NA,309.94,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_30963",1,"1",88362769,NA,NA,313.20,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_30961",1,"1",88389459,NA,NA,313.21,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_9397",1,"1",88409394,NA,NA,314.43,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_9392",1,"1",88434818,NA,NA,314.44,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_30958",1,"1",88451845,NA,NA,316.36,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_30956",1,"1",88452032,NA,NA,316.37,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_30955",1,"1",88452236,NA,NA,316.38,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_1504",2,"2", 4479289,NA,NA, 0.00,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_4344",2,"2", 4884993,NA,NA, 0.49,0,3,0,0,0,0,1,1,1,0
     "solcap_snp_c2_4354",2,"2", 5159401,NA,NA, 0.65,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_48725",2,"2", 5510874,NA,NA, 0.65,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_3750",2,"2", 6090174,NA,NA, 1.63,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_11591",2,"2", 6647886,NA,NA, 2.61,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_3747",2,"2", 7050814,NA,NA, 2.82,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_4515",2,"2", 8246308,NA,NA, 3.03,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_14690",2,"2", 8398966,NA,NA, 3.03,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_14648",2,"2", 8799627,NA,NA, 3.47,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c1_4792",2,"2", 8802985,NA,NA, 4.42,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_14645",2,"2", 9338437,NA,NA, 5.05,2,0,0,0,1,1,0,0,0,0
     "solcap_snp_c2_730",2,"2",12188889,NA,NA, 5.70,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_41887",2,"2",15292858,NA,NA, 6.44,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_47096",2,"2",16846846,NA,NA, 8.89,0,3,0,0,0,0,0,1,1,1
     "solcap_snp_c2_17387",2,"2",20193366,NA,NA, 9.64,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_17427",2,"2",20681191,NA,NA, 11.77,3,0,1,1,1,0,0,0,0,0
     "solcap_snp_c2_17428",2,"2",20681220,NA,NA, 12.45,1,3,0,0,0,1,1,1,0,1
     "solcap_snp_c1_5739",2,"2",20681710,NA,NA, 13.09,3,0,1,1,1,0,0,0,0,0
     "solcap_snp_c1_11344",2,"2",21725517,NA,NA, 18.09,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_38022",2,"2",22006999,NA,NA, 18.88,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_32421",2,"2",22621554,NA,NA, 21.89,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_9719",2,"2",22749359,NA,NA, 22.13,0,3,0,0,0,0,1,1,0,1
     "solcap_snp_c2_39705",2,"2",23426100,NA,NA, 25.47,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_39677",2,"2",23550342,NA,NA, 26.12,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_37256",2,"2",23737215,NA,NA, 27.42,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_11122",2,"2",23799802,NA,NA, 27.43,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_33996",2,"2",24149138,NA,NA, 30.38,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_53818",2,"2",24744880,NA,NA, 30.38,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_15402",2,"2",24899862,NA,NA, 31.49,4,1,1,1,1,1,0,0,1,0
     "solcap_snp_c2_52630",2,"2",24910552,NA,NA, 34.48,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_21752",2,"2",25050163,NA,NA, 36.52,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_6841",2,"2",25051854,NA,NA, 37.05,4,1,1,1,1,1,0,0,1,0
     "solcap_snp_c2_21746",2,"2",25072703,NA,NA, 37.40,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_21722",2,"2",25322160,NA,NA, 38.34,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_21717",2,"2",25423184,NA,NA, 40.23,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c1_9369",2,"2",26798985,NA,NA, 42.18,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_45392",2,"2",27065211,NA,NA, 42.79,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_45307",2,"2",27086772,NA,NA, 43.77,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_45310",2,"2",27088140,NA,NA, 43.93,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_45311",2,"2",27088340,NA,NA, 44.25,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_13459",2,"2",27143875,NA,NA, 45.22,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13465",2,"2",27190187,NA,NA, 45.92,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_12339",2,"2",27411139,NA,NA, 45.94,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_12345",2,"2",27412322,NA,NA, 46.50,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_12305",2,"2",27458950,NA,NA, 46.91,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_12310",2,"2",27553365,NA,NA, 47.61,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_41980",2,"2",27557427,NA,NA, 48.15,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_12330",2,"2",27618598,NA,NA, 48.15,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42059",2,"2",27676633,NA,NA, 48.15,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_38940",2,"2",27856761,NA,NA, 48.63,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_38938",2,"2",27860023,NA,NA, 49.54,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_38936",2,"2",27860101,NA,NA, 49.88,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_11556",2,"2",28039994,NA,NA, 50.06,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_38952",2,"2",28230312,NA,NA, 52.01,4,1,1,1,1,1,0,0,0,1
     "solcap_snp_c2_19692",2,"2",28745987,NA,NA, 54.82,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_5091",2,"2",28830938,NA,NA, 55.63,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_5088",2,"2",28832209,NA,NA, 55.63,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_15749",2,"2",28938673,NA,NA, 56.86,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_48238",2,"2",29093635,NA,NA, 56.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_48237",2,"2",29093750,NA,NA, 56.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_14280",2,"2",29136032,NA,NA, 56.86,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_48195",2,"2",29136966,NA,NA, 58.21,3,1,1,0,1,1,1,0,0,0
     "solcap_snp_c1_14293",2,"2",29163304,NA,NA, 59.03,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_39155",2,"2",29312895,NA,NA, 59.03,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_39135",2,"2",29416066,NA,NA, 61.45,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_51113",2,"2",29665174,NA,NA, 61.69,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13912",2,"2",29883519,NA,NA, 63.21,1,2,0,1,0,0,0,1,0,1
     "solcap_snp_c2_46903",2,"2",29922714,NA,NA, 63.51,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_46904",2,"2",29922763,NA,NA, 63.51,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13929",2,"2",29928927,NA,NA, 63.80,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_46909",2,"2",29929969,NA,NA, 64.06,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_13910",2,"2",29990872,NA,NA, 64.32,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_13911",2,"2",30022458,NA,NA, 64.32,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_46885",2,"2",30044742,NA,NA, 64.33,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_46887",2,"2",30044882,NA,NA, 64.33,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_46898",2,"2",30147247,NA,NA, 64.62,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_7469",2,"2",30364207,NA,NA, 65.87,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_7412",2,"2",30401330,NA,NA, 66.50,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_7430",2,"2",30480570,NA,NA, 67.07,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_23170",2,"2",30785563,NA,NA, 68.54,1,3,0,1,0,0,1,0,1,1
     "solcap_snp_c2_23188",2,"2",31021446,NA,NA, 69.23,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_23192",2,"2",31060240,NA,NA, 70.07,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_54732",2,"2",31205330,NA,NA, 70.53,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_41534",2,"2",31571193,NA,NA, 71.69,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_13236",2,"2",31663185,NA,NA, 71.70,3,1,1,0,1,1,0,1,0,0
     "solcap_snp_c1_13233",2,"2",31714504,NA,NA, 71.70,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_39191",2,"2",32084708,NA,NA, 72.91,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c1_11581",2,"2",32220207,NA,NA, 74.63,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44771",2,"2",32647466,NA,NA, 75.14,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_44774",2,"2",32668501,NA,NA, 75.61,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44776",2,"2",32669850,NA,NA, 75.61,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44778",2,"2",32671297,NA,NA, 75.82,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44768",2,"2",32806437,NA,NA, 76.46,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_44769",2,"2",32820718,NA,NA, 76.70,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_44770",2,"2",32822882,NA,NA, 76.70,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_13051",2,"2",33076397,NA,NA, 76.70,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c1_4192",2,"2",33204619,NA,NA, 78.22,2,1,0,0,1,1,0,1,0,0
     "solcap_snp_c2_51998",2,"2",33270668,NA,NA, 78.76,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_51985",2,"2",33352028,NA,NA, 80.22,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_51990",2,"2",33357450,NA,NA, 80.23,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_48784",2,"2",33668370,NA,NA, 82.72,3,3,1,1,1,0,0,1,1,1
     "solcap_snp_c2_47037",2,"2",33978883,NA,NA, 85.33,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c1_12264",2,"2",34171806,NA,NA, 86.01,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_33141",2,"2",34594739,NA,NA, 88.89,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_33108",2,"2",34739225,NA,NA, 88.90,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_40155",2,"2",35112346,NA,NA, 90.03,2,3,0,0,1,1,1,1,1,0
     "solcap_snp_c2_50570",2,"2",35399177,NA,NA, 91.75,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_50394",2,"2",35549597,NA,NA, 92.94,2,1,1,1,0,0,0,0,0,1
     "solcap_snp_c2_50391",2,"2",35579108,NA,NA, 93.63,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_50412",2,"2",35600542,NA,NA, 93.63,4,3,1,1,1,1,1,1,1,0
     "solcap_snp_c2_50405",2,"2",35657756,NA,NA, 94.17,1,3,0,0,1,0,1,1,1,0
     "solcap_snp_c2_27433",2,"2",35990927,NA,NA, 94.67,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_27437",2,"2",36019472,NA,NA, 94.67,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_17973",2,"2",36229730,NA,NA, 95.07,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_17954",2,"2",36329410,NA,NA, 96.17,2,2,1,0,0,1,1,0,1,0
     "solcap_snp_c2_17938",2,"2",36364347,NA,NA, 96.74,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17937",2,"2",36364435,NA,NA, 96.99,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17935",2,"2",36364609,NA,NA, 97.09,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17932",2,"2",36364767,NA,NA, 97.18,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17930",2,"2",36364901,NA,NA, 97.18,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17926",2,"2",36365501,NA,NA, 97.38,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17925",2,"2",36365552,NA,NA, 97.79,2,2,0,1,1,0,0,1,0,1
     "solcap_snp_c2_17922",2,"2",36374598,NA,NA, 98.62,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17921",2,"2",36375406,NA,NA, 98.62,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17914",2,"2",36422560,NA,NA,100.07,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_17901",2,"2",36454929,NA,NA,101.33,2,1,1,0,0,1,1,0,0,0
     "solcap_snp_c2_17900",2,"2",36455067,NA,NA,101.95,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17899",2,"2",36455154,NA,NA,101.96,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17897",2,"2",36455571,NA,NA,101.96,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_17896",2,"2",36455607,NA,NA,101.96,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17895",2,"2",36455817,NA,NA,103.63,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_17816",2,"2",36728687,NA,NA,103.78,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_17809",2,"2",36799097,NA,NA,103.79,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_5846",2,"2",36959231,NA,NA,104.26,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_5845",2,"2",36959234,NA,NA,105.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_49495",2,"2",37017828,NA,NA,105.32,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c2_42169",2,"2",37438591,NA,NA,105.32,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_42172",2,"2",37439183,NA,NA,105.33,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c1_16170",2,"2",37474563,NA,NA,105.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_55632",2,"2",37474656,NA,NA,105.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_16171",2,"2",37475069,NA,NA,105.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_12373",2,"2",37530401,NA,NA,105.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_12382",2,"2",37654438,NA,NA,105.83,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_42241",2,"2",37676252,NA,NA,106.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35211",2,"2",37831945,NA,NA,106.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_10494",2,"2",37845965,NA,NA,106.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_10492",2,"2",37890758,NA,NA,106.83,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_10491",2,"2",37903554,NA,NA,107.24,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_35165",2,"2",37982943,NA,NA,108.38,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35139",2,"2",38046886,NA,NA,108.38,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_35113",2,"2",38121156,NA,NA,108.80,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_15466",2,"2",38386450,NA,NA,109.46,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53037",2,"2",38688112,NA,NA,109.46,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53036",2,"2",38688195,NA,NA,109.47,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53034",2,"2",38688354,NA,NA,109.47,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53033",2,"2",38688468,NA,NA,109.88,2,1,1,0,0,1,0,1,0,0
     "solcap_snp_c1_11955",2,"2",38837510,NA,NA,112.32,2,1,1,1,0,0,0,1,0,0
     "solcap_snp_c2_40635",2,"2",39073404,NA,NA,113.50,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_40638",2,"2",39073700,NA,NA,115.75,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42132",2,"2",39144989,NA,NA,115.75,1,3,0,0,1,0,1,0,1,1
     "solcap_snp_c2_42133",2,"2",39144999,NA,NA,115.75,1,3,0,0,1,0,1,0,1,1
     "solcap_snp_c2_42126",2,"2",39369111,NA,NA,115.80,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_42127",2,"2",39369213,NA,NA,115.80,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c1_8113",2,"2",39934151,NA,NA,120.10,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_8118",2,"2",39940655,NA,NA,120.12,2,3,0,0,1,1,1,0,1,1
     "solcap_snp_c1_8125",2,"2",39970010,NA,NA,120.19,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_25892",2,"2",40044441,NA,NA,122.61,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_25896",2,"2",40132579,NA,NA,122.66,3,3,1,0,1,1,1,0,1,1
     "solcap_snp_c2_25897",2,"2",40132705,NA,NA,122.66,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_25179",2,"2",40294633,NA,NA,123.40,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_7964",2,"2",40294982,NA,NA,126.16,3,3,1,1,1,0,1,1,0,1
     "solcap_snp_c2_7555",2,"2",41356969,NA,NA,128.16,0,2,0,0,0,0,0,1,1,0
     "solcap_snp_c2_7558",2,"2",41357718,NA,NA,128.59,0,2,0,0,0,0,0,1,1,0
     "solcap_snp_c2_7559",2,"2",41357748,NA,NA,128.59,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_7565",2,"2",41368149,NA,NA,129.00,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c1_2632",2,"2",41745246,NA,NA,130.15,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_2640",2,"2",41814961,NA,NA,130.65,2,3,0,0,1,1,1,1,1,0
     "solcap_snp_c1_2641",2,"2",41814973,NA,NA,131.72,2,1,0,0,1,1,1,0,0,0
     "solcap_snp_c1_2656",2,"2",41911152,NA,NA,133.37,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c1_2574",2,"2",42014614,NA,NA,133.68,2,3,1,1,0,0,0,1,1,1
     "solcap_snp_c2_7401",2,"2",42083055,NA,NA,136.14,3,3,0,1,1,1,1,0,1,1
     "solcap_snp_c2_7422",2,"2",42178610,NA,NA,137.92,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c1_2587",2,"2",42179852,NA,NA,138.59,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_7426",2,"2",42180225,NA,NA,139.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_57421",2,"2",42320846,NA,NA,141.09,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_16540",2,"2",42320852,NA,NA,141.19,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_15746",2,"2",42346419,NA,NA,142.45,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_22939",2,"2",42474531,NA,NA,144.58,2,1,1,1,0,0,0,0,0,1
     "solcap_snp_c1_7346",2,"2",42597250,NA,NA,146.12,2,2,1,1,0,0,1,0,0,1
     "solcap_snp_c2_22853",2,"2",42733575,NA,NA,146.95,3,2,0,1,1,1,0,1,1,0
     "solcap_snp_c1_7325",2,"2",42764357,NA,NA,147.64,1,1,1,0,0,0,0,0,0,1
     "solcap_snp_c2_27216",2,"2",43804789,NA,NA,152.13,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_27372",2,"2",44159308,NA,NA,155.23,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_27270",2,"2",44458161,NA,NA,155.71,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_27269",2,"2",44458317,NA,NA,155.71,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_27271",2,"2",44458644,NA,NA,158.41,2,3,0,0,1,1,1,1,0,1
     "solcap_snp_c1_8490",2,"2",44698531,NA,NA,160.85,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_43350",2,"2",44773146,NA,NA,162.25,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_43348",2,"2",44773305,NA,NA,163.47,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_12771",2,"2",44810386,NA,NA,164.70,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_43408",2,"2",44944594,NA,NA,164.70,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_12509",2,"2",45147157,NA,NA,165.43,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_42570",2,"2",45147640,NA,NA,165.43,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_14981",2,"2",45458650,NA,NA,168.41,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c1_4826",2,"2",45458875,NA,NA,168.42,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_4847",2,"2",45616677,NA,NA,168.43,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_15018",2,"2",45618297,NA,NA,170.53,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c1_4849",2,"2",45618958,NA,NA,170.88,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_15041",2,"2",45652545,NA,NA,172.61,2,3,0,0,1,1,1,1,0,1
     "solcap_snp_c2_15042",2,"2",45652553,NA,NA,175.68,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_15046",2,"2",45652811,NA,NA,175.68,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_15047",2,"2",45652877,NA,NA,176.03,1,1,0,1,0,0,0,1,0,0
     "solcap_snp_c2_15048",2,"2",45652958,NA,NA,176.28,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_15065",2,"2",45694316,NA,NA,176.45,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c1_4860",2,"2",45695631,NA,NA,176.60,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_15066",2,"2",45695637,NA,NA,176.76,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_4873",2,"2",45744372,NA,NA,176.88,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_4881",2,"2",45756458,NA,NA,176.88,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_7873",2,"2",46195290,NA,NA,177.44,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_7872",2,"2",46195303,NA,NA,178.19,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_7867",2,"2",46196437,NA,NA,179.89,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c1_7848",2,"2",46291502,NA,NA,179.89,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c1_7834",2,"2",46384191,NA,NA,181.66,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_24869",2,"2",46387342,NA,NA,182.20,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_47211",2,"2",46940997,NA,NA,182.20,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_47197",2,"2",47137310,NA,NA,184.36,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_47199",2,"2",47137738,NA,NA,184.36,3,3,1,0,1,1,1,0,1,1
     "solcap_snp_c2_47200",2,"2",47137863,NA,NA,187.30,2,0,0,0,1,1,0,0,0,0
     "solcap_snp_c2_47201",2,"2",47141179,NA,NA,188.15,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_10607",2,"2",47182635,NA,NA,189.23,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_10593",2,"2",47302272,NA,NA,193.87,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_35686",2,"2",47323948,NA,NA,193.87,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35687",2,"2",47324096,NA,NA,193.87,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35690",2,"2",47324235,NA,NA,193.87,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_35691",2,"2",47324287,NA,NA,194.70,0,3,0,0,0,0,1,1,0,1
     "solcap_snp_c2_35692",2,"2",47325069,NA,NA,194.70,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_35697",2,"2",47325513,NA,NA,195.66,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_35700",2,"2",47326506,NA,NA,196.63,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_35701",2,"2",47327334,NA,NA,196.63,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_35702",2,"2",47327423,NA,NA,196.63,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_35706",2,"2",47327566,NA,NA,197.84,1,1,0,1,0,0,0,1,0,0
     "solcap_snp_c1_11458",2,"2",47625835,NA,NA,200.53,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c1_11459",2,"2",47625847,NA,NA,201.80,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_38551",2,"2",47627255,NA,NA,201.81,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_38552",2,"2",47627384,NA,NA,201.81,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_38553",2,"2",47627420,NA,NA,201.95,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_38555",2,"2",47627603,NA,NA,202.72,1,2,0,1,0,0,1,0,0,1
     "solcap_snp_c1_5931",2,"2",48498256,NA,NA,206.31,2,3,1,1,0,0,1,0,1,1
     "solcap_snp_c1_5895",2,"2",48565009,NA,NA,206.32,1,1,1,0,0,0,0,0,1,0
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.001 0.005
     Iter: 2 0.024 0.000 0.001 0.007
     Iter: 3 0.028 0.000 0.000 0.008
     Iter: 4 0.030 0.000 0.000 0.008
     Iter: 5 0.030 0.000 0.000 0.008
     Iter: 6 0.031 0.000 0.000 0.008
     Iter: 7 0.031 0.000 0.000 0.008
     Iter: 8 0.031 0.000 0.000 0.008
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
    
     Linkage group 1 ...
     INFO: Going singlemode. Using one CPU for calculation.
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
    
     Linkage group 1 ...
     trying URL 'https://github.com/mmollina/MAPpoly_vignettes/raw/master/data/sweet_sample_ch3.vcf.gz'
     Content type 'text/plain; charset=utf-8' length 1416917 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading data...
     Scanning file to determine attributes.
     File attributes:
     meta lines: 8
     header_line: 9
     variant count: 200
     column count: 326
    
     Meta line 8 read in.
     All meta lines processed.
     gt matrix initialized.
     Character matrix gt created.
     Character matrix gt rows: 200
     Character matrix gt cols: 326
     skip: 0
     nrows: 200
     row_num: 0
    
     Processed variant: 200
     All variants processed
     Processing genotypes...Done!
     Selected ploidy: 6
     Done!
     Read the following data:
     Ploidy level: 6
     No. individuals: 315
     No. markers: 167
     No. informative markers: 167 (100%)
     This dataset contains chromosome information.
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     This is an object of class 'mappoly.data'
     Ploidy level: 6
     No. individuals: 315
     No. markers: 164
     Missing data under prob. threshold: 6.01%
     Redundant markers: 1.8%
    
     No. markers per chromosome: not available
     ----------
     No. of markers per dosage combination in both parents:
     P1 P2 freq
     0 1 50
     0 2 8
     0 3 4
     0 4 1
     1 0 26
     1 1 12
     1 2 9
     1 3 4
     1 4 1
     2 0 3
     2 1 10
     2 2 7
     2 3 7
     2 4 4
     3 0 3
     3 1 3
     3 2 7
     3 3 1
     4 0 1
     4 1 2
     4 2 1
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/SolCAP_dosage'
     Content type 'text/plain; charset=utf-8' length 1445956 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 160
     No. markers: 4017
     No. informative markers: 4017 (100%)
     ...
    
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/hexa_sample'
     Content type 'text/plain; charset=utf-8' length 142904 bytes (139 KB)
     ==================================================
     downloaded 139 KB
    
     Reading the following data:
     Ploidy level: 6
     No. individuals: 50
     No. markers: 100
     No. informative markers: 71 (71%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/tetra_solcap.csv'
     Content type 'text/plain; charset=utf-8' length 1448564 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 160
     No. markers: 4017
     No. informative markers: 4017 (100%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Done with filtering.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/fitpoly.dat'
     Content type 'text/plain; charset=utf-8' length 3563386 bytes (3.4 MB)
     ==================================================
     downloaded 3.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 150
     No. markers: 145
     No. informative markers: 138 (95.2%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     This is an object of class 'mappoly.data'
     Ploidy level: 4
     No. individuals: 150
     No. markers: 138
     Missing data: 3.89%
    
     No. markers per chromosome: not available
     ----------
     No. of markers per dosage combination in both parents:
     P1 P2 freq
     0 1 18
     0 2 24
     1 0 18
     1 1 19
     1 2 10
     1 3 3
     2 0 13
     2 1 6
     2 2 15
     2 3 2
     3 1 1
     3 2 5
     3 3 2
     3 4 1
     4 2 1
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007
     Iter: 1 0.031 0.000 0.000 0.008
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 20
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.002 0.006 0.006 0.007 0.006 0.011 0.008 0.004 0.003 0.001 0.004 0.001 0.003 0.007 0.009 0.009 0.000
     Iter: 2 0.024 0.000 0.001 0.007 0.007 0.009 0.006 0.014 0.010 0.004 0.003 0.001 0.004 0.001 0.004 0.009 0.013 0.016 0.000
     Iter: 3 0.028 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.001 0.004 0.009 0.016 0.020 0.000
     Iter: 4 0.029 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.004 0.008 0.018 0.024 0.000
     Iter: 5 0.030 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.008 0.020 0.027 0.000
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.007 0.021 0.029 0.000
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.006 0.021 0.031 0.000
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.005 0.022 0.032 0.000
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.004 0.022 0.033 0.000
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.004 0.022 0.034 0.000
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.035 0.000
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.035 0.000
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.036 0.000
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.036 0.000
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.001 0.024 0.037 0.000
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.001 0.024 0.037 0.000
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.037 0.000
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.037 0.000
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.038 0.000
     Iter: 23 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.038 0.000
     INFO: Going singlemode. Using one CPU for calculation.
     2 submaps found ...
     adding block 2 of 2
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
    
     M_1
     ----------------------------------
     dosage P1: 1
     dosage P2: 2
     ----
     dosage distribution
     0 1 2 3 mis
     23 120 126 31 0
     ----
     expected polysomic segregation
     0 1 2 3 4 5 6
     0.1 0.4 0.4 0.1 0.0 0.0 0.0
     ----------------------------------
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.017 0.010
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.029 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010
     Iter: 1 0.030 0.000 0.000 0.007 0.007 0.009 0.006 0.017 0.010
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.006 0.006 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.014
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.012
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.010
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.010
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.009
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.009
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 23 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 24 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Updating map 1
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 127 ]
    
     == Failed tests ================================================================
     -- Error (test-cahe_twopts.R:8:3): compute genotype counts correctly -----------
     Error in `get_cache_two_pts_from_web(ploidy = 4)`: Cache file not found. Try to use get.from.web = FALSE
     Backtrace:
     x
     1. \-mappoly::get_cache_two_pts_from_web(ploidy = 4) at test-cahe_twopts.R:8:2
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 127 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.3.0
Check: running tests for arch ‘x64’
Result: ERROR
     Running 'testthat.R' [158s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > if(requireNamespace("testthat", quietly = TRUE)){
     + library(testthat)
     + library(mappoly)
     + test_check("mappoly")
     + }
     =====================================================
     MAPpoly Package [Version 0.3.02022-01-11 09:22:41 UTC]
     More information: https://github.com/mmollina/MAPpoly
     =====================================================
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     INFO: Going singlemode. Using one CPU.
     Stress: 0.30318
     Mean Nearest Neighbour Fit: 6.18154INFO: Using 2 CPUs for calculation.
     INFO: Done with 2701 pairs of markers
     INFO: Calculation took: 10.32 seconds
     INFO: Using 2 CPUs for calculation.
     INFO: Done with 2701 pairs of markers
     INFO: Calculation took: 11.87 seconds
     Going RcppParallel mode.
     ...
     Done with pairwise computation.
     ~~~~~~~
     Reorganizing results
     ...
     Caching the following dosage combination:
     P.k P.k+1 Q.k Q.k+1
     Conf.1 3 0 2 1
     Conf.2 3 3 2 2
     Conf.3 3 4 2 3
     Conf.4 4 0 3 1
     Conf.5 4 3 3 2
     Conf.6 4 4 3 3
     INFO: Going singlemode. Using one Core/CPU/PC for calculation.
     INFO: Done with 6 phase configurations
     INFO: Calculation took: 0.57 seconds
     This is an object of class 'cache.info'
     -----------------------------------------------------
     Ploidy level: 4
     No. marker combinations: 625
     -----------------------------------------------------
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
     Ploidy level:4
     Number of individuals:160
     ..................................................
     ..................................................
     ..................................................
     ..........
     Ploidy level:4
     Number of individuals:160
     ..................................................
     ..................................................
     ..................................................
     ..........
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     This is an object of class 'mappoly.map'
     Ploidy level: 4
     No. individuals: 160
     No. markers: 5
     No. linkage phases: 1
    
     ---------------------------------------------
     Linkage phase configuration: 1
     log-likelihood: -123.7037
     LOD: 0
    
     a b c d e f g h
     solcap_snp_c2_4408 o o o o o o o | 0.0
     solcap_snp_c2_21332 o o o | o o | | 0.7
     solcap_snp_c2_21314 o o o o o o o | 0.8
     solcap_snp_c2_4437 o o o | o o | | 0.9
     solcap_snp_c2_6674 | | | | | | | o 0.9
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     Number of markers: 5
     4 markers...
     * Trying sequence: 1 2 3 4 :
     1 phase(s): .
     5/5:(100%) 7: 1 ph (1/1) -- tail: 4 |||| |||*
     Markers in the initial sequence: 5
     Mapped markers : 5 (100%)
     Number of markers: 5
     4 markers...
     * Trying sequence: 1 2 3 4 :
     1 phase(s): .
     5/5:(100%) 7: 1 ph (1/1) -- tail: 4 |||| |||*
     Markers in the initial sequence: 5
     Mapped markers : 5 (100%)
     Ploidy level: 4
     Rec. Frac. Limit: 0.5
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.019 0.007 0.012 0.007
     Iter: 2 0.028 0.006 0.015 0.008
     Iter: 3 0.032 0.005 0.016 0.009
     Iter: 4 0.034 0.005 0.017 0.010
     Iter: 5 0.036 0.004 0.017 0.011
     Iter: 6 0.036 0.004 0.017 0.011
     Iter: 7 0.037 0.003 0.017 0.012
     Iter: 8 0.037 0.003 0.017 0.013
     Iter: 9 0.037 0.003 0.016 0.013
     Iter: 10 0.037 0.002 0.016 0.014
     Iter: 11 0.037 0.002 0.016 0.014
     Iter: 12 0.037 0.002 0.016 0.014
     Iter: 13 0.037 0.002 0.016 0.015
     Iter: 14 0.038 0.002 0.016 0.015
     Iter: 15 0.038 0.002 0.016 0.015
     Iter: 16 0.038 0.002 0.016 0.015
     Iter: 17 0.038 0.002 0.016 0.016
     Iter: 18 0.038 0.002 0.016 0.016
     Iter: 19 0.038 0.002 0.016 0.016
     Iter: 20 0.038 0.002 0.016 0.016
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.001 0.005
     Iter: 2 0.024 0.000 0.001 0.007
     Iter: 3 0.028 0.000 0.000 0.008
     Iter: 4 0.030 0.000 0.000 0.008
     Iter: 5 0.030 0.000 0.000 0.008
     Iter: 6 0.031 0.000 0.000 0.008
     Iter: 7 0.031 0.000 0.000 0.008
     Iter: 8 0.031 0.000 0.000 0.008
     "Marker Name","LG","Ref Chrom","Ref Position","Ref Allele","Alt Allele","Map Position","Dose in P1","Dose in P2","ph.P.a","ph.P.b","ph.P.c","ph.P.d","ph.Q.e","ph.Q.f","ph.Q.g","ph.Q.h"
     "solcap_snp_c2_51460",1,"1", 151147,NA,NA, 0.00,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_36608",1,"1", 251032,NA,NA, 3.20,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_36615",1,"1", 252977,NA,NA, 3.21,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_36658",1,"1", 269300,NA,NA, 3.22,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_10930",1,"1", 309242,NA,NA, 3.92,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_36629",1,"1", 433701,NA,NA, 4.62,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_10915",1,"1", 481195,NA,NA, 5.56,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c1_10918",1,"1", 496966,NA,NA, 6.18,1,2,0,1,0,0,0,1,1,0
     "solcap_snp_c2_36650",1,"1", 507322,NA,NA, 7.67,1,2,0,1,0,0,0,1,1,0
     "solcap_snp_c2_36643",1,"1", 508489,NA,NA, 8.71,2,2,0,0,1,1,1,0,0,1
     "solcap_snp_c2_36660",1,"1", 534726,NA,NA, 9.12,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_36664",1,"1", 535354,NA,NA, 9.40,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c2_36686",1,"1", 601257,NA,NA, 9.41,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_54803",1,"1", 811809,NA,NA, 9.92,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c2_54800",1,"1", 813297,NA,NA, 9.93,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c2_54797",1,"1", 817305,NA,NA, 10.46,3,2,1,0,1,1,1,0,0,1
     "solcap_snp_c2_56714",1,"1", 931273,NA,NA, 10.47,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_6865",1,"1", 1513756,NA,NA, 12.72,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_6683",1,"1", 1828357,NA,NA, 15.31,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c1_2417",1,"1", 1838764,NA,NA, 15.32,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_6713",1,"1", 2068205,NA,NA, 15.58,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21098",1,"1", 2589396,NA,NA, 17.78,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21100",1,"1", 2591241,NA,NA, 19.16,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_21233",1,"1", 2956217,NA,NA, 21.10,2,1,0,1,0,1,0,1,0,0
     "solcap_snp_c1_6704",1,"1", 2957498,NA,NA, 21.20,1,2,0,0,1,0,0,1,1,0
     "solcap_snp_c2_21236",1,"1", 2958510,NA,NA, 22.07,3,2,0,1,1,1,0,1,1,0
     "solcap_snp_c1_6123",1,"1", 3296081,NA,NA, 25.79,2,2,1,0,1,0,0,1,1,0
     "solcap_snp_c1_6114",1,"1", 3693321,NA,NA, 25.97,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_6109",1,"1", 3716835,NA,NA, 26.67,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_51791",1,"1", 4309511,NA,NA, 31.96,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_49938",1,"1", 4597936,NA,NA, 31.97,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_56125",1,"1", 5291666,NA,NA, 34.56,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_45058",1,"1", 5347412,NA,NA, 35.15,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_45071",1,"1", 5386765,NA,NA, 36.19,3,1,1,1,0,1,1,0,0,0
     "solcap_snp_c2_45064",1,"1", 5502148,NA,NA, 36.69,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_13289",1,"1", 5504921,NA,NA, 36.70,2,3,1,0,0,1,0,1,1,1
     "solcap_snp_c1_13293",1,"1", 5505413,NA,NA, 36.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_27877",1,"1", 6071274,NA,NA, 38.46,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_27878",1,"1", 6071298,NA,NA, 38.47,1,1,0,0,0,1,1,0,0,0
     "solcap_snp_c2_27882",1,"1", 6071676,NA,NA, 38.73,3,1,0,1,1,1,1,0,0,0
     "solcap_snp_c2_27884",1,"1", 6071778,NA,NA, 38.74,3,1,0,1,1,1,1,0,0,0
     "solcap_snp_c2_27885",1,"1", 6071817,NA,NA, 39.13,0,3,0,0,0,0,0,1,1,1
     "solcap_snp_c2_27903",1,"1", 6295642,NA,NA, 40.12,2,3,0,1,0,1,0,1,1,1
     "solcap_snp_c2_27918",1,"1", 6587772,NA,NA, 40.56,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_48155",1,"1", 7165330,NA,NA, 41.98,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_48154",1,"1", 7165840,NA,NA, 42.33,2,3,0,1,0,1,0,1,1,1
     "solcap_snp_c2_50011",1,"1", 7446981,NA,NA, 42.34,2,3,1,0,1,0,0,1,1,1
     "solcap_snp_c1_16312",1,"1", 7641280,NA,NA, 43.72,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52709",1,"1", 8645609,NA,NA, 44.63,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52712",1,"1", 8645693,NA,NA, 44.64,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_52705",1,"1", 8653609,NA,NA, 45.12,2,1,0,1,0,1,0,1,0,0
     "solcap_snp_c2_48549",1,"1",10570936,NA,NA, 52.54,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_48563",1,"1",10573573,NA,NA, 52.55,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_55639",1,"1",11235975,NA,NA, 52.56,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_56356",1,"1",11737675,NA,NA, 52.57,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_56359",1,"1",11742617,NA,NA, 52.81,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_57284",1,"1",11774518,NA,NA, 53.18,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_45637",1,"1",12022263,NA,NA, 53.55,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_55008",1,"1",12994177,NA,NA, 57.69,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_53521",1,"1",13266849,NA,NA, 57.70,2,2,0,1,0,1,0,0,1,1
     "solcap_snp_c2_43984",1,"1",13369857,NA,NA, 57.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_12938",1,"1",13392343,NA,NA, 58.21,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_43970",1,"1",13545289,NA,NA, 59.61,1,1,0,1,0,0,0,0,1,0
     "solcap_snp_c2_43973",1,"1",13547044,NA,NA, 60.07,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c1_8908",1,"1",13656016,NA,NA, 60.91,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_54355",1,"1",13740719,NA,NA, 63.95,2,2,1,0,1,0,0,1,0,1
     "solcap_snp_c2_54353",1,"1",13747285,NA,NA, 66.18,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_49867",1,"1",16399117,NA,NA, 66.19,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_48568",1,"1",17370536,NA,NA, 66.20,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c1_8593",1,"1",17664021,NA,NA, 66.21,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_53759",1,"1",18753871,NA,NA, 66.22,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_56842",1,"1",18925684,NA,NA, 66.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c1_16421",1,"1",18926984,NA,NA, 66.59,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_14663",1,"1",19664067,NA,NA, 66.71,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_49326",1,"1",20549734,NA,NA, 68.28,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c1_5477",1,"1",23657080,NA,NA, 68.29,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_43643",1,"1",29180891,NA,NA, 69.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_22549",1,"1",29678234,NA,NA, 69.24,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_22546",1,"1",29679750,NA,NA, 69.25,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_7136",1,"1",30125081,NA,NA, 69.59,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_11066",1,"1",32091982,NA,NA, 69.93,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_9378",1,"1",34098178,NA,NA, 70.23,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_27683",1,"1",37067385,NA,NA, 70.27,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_27677",1,"1",37071329,NA,NA, 70.59,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42829",1,"1",38478335,NA,NA, 71.26,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_15714",1,"1",39325633,NA,NA, 71.51,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_45395",1,"1",39529256,NA,NA, 71.81,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_49732",1,"1",41859322,NA,NA, 73.88,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_14648",1,"1",41947283,NA,NA, 73.89,4,1,1,1,1,1,0,1,0,0
     "solcap_snp_c1_14654",1,"1",41979022,NA,NA, 73.90,4,1,1,1,1,1,0,1,0,0
     "solcap_snp_c2_32111",1,"1",42197632,NA,NA, 73.91,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_32112",1,"1",42197668,NA,NA, 74.94,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_50028",1,"1",43180567,NA,NA, 76.56,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c2_50023",1,"1",43196126,NA,NA, 77.18,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_49042",1,"1",43330828,NA,NA, 78.19,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_16169",1,"1",44194024,NA,NA, 81.89,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_14248",1,"1",44696488,NA,NA, 81.90,2,1,1,0,1,0,0,1,0,0
     "solcap_snp_c1_14249",1,"1",44696500,NA,NA, 82.40,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_14259",1,"1",44700858,NA,NA, 82.41,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_14261",1,"1",44702300,NA,NA, 82.42,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c2_53708",1,"1",44890351,NA,NA, 83.08,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_40131",1,"1",45751390,NA,NA, 83.09,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_54811",1,"1",46271054,NA,NA, 83.10,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_15855",1,"1",46323471,NA,NA, 83.11,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_35220",1,"1",47299682,NA,NA, 83.12,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_35218",1,"1",47300005,NA,NA, 83.13,0,3,0,0,0,0,1,0,1,1
     "solcap_snp_c2_35601",1,"1",50791085,NA,NA, 85.14,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_694",1,"1",51290105,NA,NA, 85.74,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_686",1,"1",51324458,NA,NA, 85.80,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c2_57898",1,"1",51736618,NA,NA, 85.81,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_880",1,"1",54480981,NA,NA, 86.14,4,3,1,1,1,1,1,1,1,0
     "solcap_snp_c2_55113",1,"1",54580381,NA,NA, 86.15,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_2874",1,"1",55163851,NA,NA, 86.16,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_55621",1,"1",55427211,NA,NA, 86.17,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_55618",1,"1",55427602,NA,NA, 86.35,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c1_14633",1,"1",57931788,NA,NA, 91.38,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_2721",1,"1",58197548,NA,NA, 91.39,1,1,0,0,0,1,1,0,0,0
     "solcap_snp_c2_2653",1,"1",58737622,NA,NA, 92.93,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_2591",1,"1",58985511,NA,NA, 93.92,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_13430",1,"1",59363361,NA,NA, 95.09,1,3,0,1,0,0,1,0,1,1
     "solcap_snp_c2_46523",1,"1",59973949,NA,NA, 95.82,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_46521",1,"1",59974282,NA,NA, 95.83,2,3,1,0,1,0,1,1,1,0
     "solcap_snp_c2_46520",1,"1",59974316,NA,NA, 95.84,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_53347",1,"1",60026944,NA,NA, 96.47,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_35511",1,"1",60433785,NA,NA, 96.48,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35518",1,"1",60512480,NA,NA, 96.49,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35520",1,"1",60513199,NA,NA, 96.50,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_35536",1,"1",60515867,NA,NA, 97.95,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_35537",1,"1",60516874,NA,NA, 97.96,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_43926",1,"1",60887837,NA,NA, 98.27,2,2,0,1,0,1,1,0,0,1
     "solcap_snp_c2_56267",1,"1",60919490,NA,NA, 99.07,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c2_20798",1,"1",60951573,NA,NA, 99.08,2,2,1,1,0,0,0,1,1,0
     "solcap_snp_c2_20799",1,"1",60951606,NA,NA, 99.29,2,2,0,0,1,1,1,0,0,1
     "solcap_snp_c2_20803",1,"1",60987155,NA,NA, 99.52,1,2,0,0,0,1,1,0,0,1
     "solcap_snp_c2_20890",1,"1",61310805,NA,NA,101.03,3,3,1,1,1,0,1,1,1,0
     "solcap_snp_c2_50903",1,"1",61774492,NA,NA,101.77,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_38428",1,"1",62058660,NA,NA,102.74,1,1,0,0,0,1,0,0,0,1
     "solcap_snp_c2_38406",1,"1",62144916,NA,NA,103.16,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_38404",1,"1",62148178,NA,NA,103.17,3,2,1,1,1,0,0,1,1,0
     "solcap_snp_c2_38448",1,"1",62289476,NA,NA,104.71,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_12106",1,"1",62802674,NA,NA,106.27,1,3,0,0,0,1,1,0,1,1
     "solcap_snp_c2_41337",1,"1",62930793,NA,NA,106.84,1,3,0,0,0,1,1,0,1,1
     "solcap_snp_c2_32359",1,"1",63208419,NA,NA,108.73,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_9679",1,"1",63338027,NA,NA,110.16,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_12057",1,"1",63596472,NA,NA,111.12,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_13686",1,"1",64120988,NA,NA,113.01,2,3,0,0,1,1,1,0,1,1
     "solcap_snp_c2_46195",1,"1",64259858,NA,NA,113.66,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_13751",1,"1",64614114,NA,NA,113.95,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_4415",1,"1",65036984,NA,NA,116.70,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c2_13675",1,"1",65036993,NA,NA,116.94,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_13676",1,"1",65054301,NA,NA,116.95,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_13671",1,"1",65062849,NA,NA,116.96,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c2_13653",1,"1",65270150,NA,NA,117.37,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c2_13650",1,"1",65277543,NA,NA,117.38,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_4744",1,"1",65472678,NA,NA,118.20,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_14467",1,"1",65694581,NA,NA,118.81,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14470",1,"1",65697018,NA,NA,118.83,2,4,1,0,0,1,1,1,1,1
     "solcap_snp_c1_4706",1,"1",65780052,NA,NA,119.64,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14487",1,"1",65780861,NA,NA,119.65,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14489",1,"1",65781907,NA,NA,119.66,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_14491",1,"1",65782311,NA,NA,119.69,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_14492",1,"1",65782372,NA,NA,119.70,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_14493",1,"1",65782860,NA,NA,120.27,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_4745",1,"1",66094082,NA,NA,123.09,2,2,1,0,0,1,1,1,0,0
     "solcap_snp_c1_4748",1,"1",66259325,NA,NA,123.10,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14589",1,"1",66283156,NA,NA,123.23,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_37564",1,"1",66307265,NA,NA,123.24,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_14595",1,"1",66307870,NA,NA,123.66,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_37566",1,"1",66307870,NA,NA,123.67,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_4752",1,"1",66336597,NA,NA,124.20,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14608",1,"1",66349497,NA,NA,124.47,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_4757",1,"1",66354237,NA,NA,124.83,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_4763",1,"1",66376115,NA,NA,124.84,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c1_5150",1,"1",66675718,NA,NA,127.51,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_58099",1,"1",66845540,NA,NA,127.69,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_5145",1,"1",66904071,NA,NA,127.70,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_20569",1,"1",67013419,NA,NA,132.36,3,1,1,1,1,0,0,0,1,0
     "solcap_snp_c2_20501",1,"1",67211402,NA,NA,136.36,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c2_20502",1,"1",67221811,NA,NA,137.02,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c2_20505",1,"1",67223365,NA,NA,138.09,3,2,0,1,1,1,0,0,1,1
     "solcap_snp_c2_20506",1,"1",67223618,NA,NA,139.27,3,3,0,1,1,1,1,0,1,1
     "solcap_snp_c2_20508",1,"1",67224636,NA,NA,139.92,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_20513",1,"1",67277917,NA,NA,140.32,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c2_20521",1,"1",67293276,NA,NA,140.85,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_20522",1,"1",67294203,NA,NA,141.34,2,0,0,1,1,0,0,0,0,0
     "solcap_snp_c1_6501",1,"1",67459562,NA,NA,142.30,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_6518",1,"1",67605601,NA,NA,142.31,2,2,0,1,0,1,0,0,1,1
     "solcap_snp_c2_13766",1,"1",67896690,NA,NA,142.32,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_52492",1,"1",67969508,NA,NA,143.43,3,2,1,1,0,1,0,0,1,1
     "solcap_snp_c2_52484",1,"1",68069976,NA,NA,144.07,1,2,0,0,1,0,1,1,0,0
     "solcap_snp_c2_49451",1,"1",68416146,NA,NA,145.42,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_14044",1,"1",68529607,NA,NA,146.51,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_51055",1,"1",68950490,NA,NA,147.79,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c1_11769",1,"1",69200071,NA,NA,148.59,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_39834",1,"1",69381232,NA,NA,149.22,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_17592",1,"1",69809943,NA,NA,150.28,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c2_17529",1,"1",69902111,NA,NA,150.29,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_17531",1,"1",70016341,NA,NA,151.13,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_17537",1,"1",70097616,NA,NA,151.14,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c1_15579",1,"1",70341165,NA,NA,151.68,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c1_15580",1,"1",70341195,NA,NA,151.91,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c2_53380",1,"1",70371798,NA,NA,152.63,3,2,0,1,1,1,0,0,1,1
     "solcap_snp_c2_53381",1,"1",70372029,NA,NA,153.40,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c2_17191",1,"1",70474751,NA,NA,153.41,2,0,0,1,0,1,0,0,0,0
     "solcap_snp_c1_5657",1,"1",70560319,NA,NA,154.13,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c1_5656",1,"1",70562884,NA,NA,154.14,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_5653",1,"1",70697401,NA,NA,154.15,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_3860",1,"1",71009488,NA,NA,155.37,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c1_3863",1,"1",71009686,NA,NA,156.05,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_12076",1,"1",71090664,NA,NA,156.55,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_3867",1,"1",71239298,NA,NA,157.43,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_3868",1,"1",71239559,NA,NA,157.65,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_3876",1,"1",71278255,NA,NA,158.09,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_12106",1,"1",71298195,NA,NA,158.31,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_3894",1,"1",71421320,NA,NA,158.74,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_12126",1,"1",71450592,NA,NA,159.39,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_12216",1,"1",72051429,NA,NA,160.94,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_12217",1,"1",72051456,NA,NA,160.97,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_3848",1,"1",72108418,NA,NA,160.98,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_3851",1,"1",72112064,NA,NA,160.99,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_9565",1,"1",72320561,NA,NA,162.31,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_9566",1,"1",72320582,NA,NA,162.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_9573",1,"1",72504567,NA,NA,162.33,2,2,0,1,1,0,0,0,1,1
     "solcap_snp_c2_31820",1,"1",72528671,NA,NA,163.44,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_31821",1,"1",72531263,NA,NA,163.45,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_9583",1,"1",72540600,NA,NA,163.66,1,2,1,0,0,0,1,1,0,0
     "solcap_snp_c1_9587",1,"1",72541075,NA,NA,163.67,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_14274",1,"1",74061621,NA,NA,166.55,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c1_4617",1,"1",74355434,NA,NA,168.09,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_14365",1,"1",74688262,NA,NA,168.11,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_14366",1,"1",74688318,NA,NA,168.54,1,2,0,0,1,0,0,0,1,1
     "solcap_snp_c1_14931",1,"1",75007319,NA,NA,168.55,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_16369",1,"1",75164058,NA,NA,169.98,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c1_5267",1,"1",75333553,NA,NA,170.01,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_5281",1,"1",75441912,NA,NA,170.02,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c1_5286",1,"1",75477570,NA,NA,170.90,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_16424",1,"1",75478258,NA,NA,171.43,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_16425",1,"1",75485276,NA,NA,171.73,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_16466",1,"1",75749019,NA,NA,171.74,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c1_5346",1,"1",75789912,NA,NA,172.18,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c1_16435",1,"1",76304406,NA,NA,172.61,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c2_2509",1,"1",76406745,NA,NA,172.62,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_2291",1,"1",76480645,NA,NA,173.91,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_641",1,"1",76511147,NA,NA,173.93,2,0,1,0,0,1,0,0,0,0
     "solcap_snp_c2_2420",1,"1",76953005,NA,NA,175.04,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_2423",1,"1",76958677,NA,NA,175.41,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_2424",1,"1",76960116,NA,NA,176.33,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_2427",1,"1",76960344,NA,NA,177.73,1,0,0,0,1,0,0,0,0,0
     "solcap_snp_c2_2450",1,"1",77056087,NA,NA,177.96,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2463",1,"1",77190863,NA,NA,178.95,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2464",1,"1",77190891,NA,NA,178.96,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2466",1,"1",77191250,NA,NA,179.19,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2505",1,"1",77350779,NA,NA,179.67,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_2508",1,"1",77353050,NA,NA,180.18,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_758",1,"1",77526728,NA,NA,180.52,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_2201",1,"1",77738922,NA,NA,180.88,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_601",1,"1",78168030,NA,NA,182.58,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_607",1,"1",78176086,NA,NA,182.59,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_2299",1,"1",78192398,NA,NA,183.05,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_2354",1,"1",78430745,NA,NA,183.73,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_50486",1,"1",78756800,NA,NA,184.18,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50484",1,"1",78757017,NA,NA,184.41,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50483",1,"1",78757327,NA,NA,184.64,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_50502",1,"1",78809381,NA,NA,184.88,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c1_15872",1,"1",78928170,NA,NA,185.35,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_7007",1,"1",79083850,NA,NA,189.67,2,2,1,0,1,0,0,1,1,0
     "solcap_snp_c1_2484",1,"1",79157311,NA,NA,193.43,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_7094",1,"1",79187093,NA,NA,193.46,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_7193",1,"1",79391798,NA,NA,193.94,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_7208",1,"1",79456001,NA,NA,197.09,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c1_2519",1,"1",79487369,NA,NA,197.10,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c1_2520",1,"1",79487485,NA,NA,197.40,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_7241",1,"1",79678600,NA,NA,197.59,3,3,1,1,0,1,1,0,1,1
     "solcap_snp_c2_7242",1,"1",79679061,NA,NA,197.60,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_7245",1,"1",79679433,NA,NA,197.96,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_7246",1,"1",79679919,NA,NA,198.32,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c1_2531",1,"1",79711129,NA,NA,198.33,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_7328",1,"1",79955769,NA,NA,199.81,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_6990",1,"1",80077222,NA,NA,200.92,2,3,1,0,0,1,0,1,1,1
     "solcap_snp_c1_2458",1,"1",80121157,NA,NA,200.93,2,2,1,0,0,1,0,0,1,1
     "solcap_snp_c2_7053",1,"1",80228512,NA,NA,202.00,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7055",1,"1",80229751,NA,NA,203.13,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7056",1,"1",80229823,NA,NA,203.59,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_7061",1,"1",80230621,NA,NA,204.94,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_7062",1,"1",80230636,NA,NA,204.95,2,2,1,1,0,0,1,1,0,0
     "solcap_snp_c1_1853",1,"1",80429124,NA,NA,205.22,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_5091",1,"1",80558977,NA,NA,206.13,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c2_5077",1,"1",80591992,NA,NA,207.68,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_5078",1,"1",80592039,NA,NA,208.01,1,1,0,0,1,0,0,1,0,0
     "solcap_snp_c2_5039",1,"1",80669402,NA,NA,209.26,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_9727",1,"1",80833354,NA,NA,209.27,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_9726",1,"1",80833555,NA,NA,209.28,2,2,0,1,0,1,1,1,0,0
     "solcap_snp_c2_9722",1,"1",80835882,NA,NA,209.91,2,2,1,0,1,0,0,0,1,1
     "solcap_snp_c2_9988",1,"1",81013079,NA,NA,212.06,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_9925",1,"1",81410356,NA,NA,212.44,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_9892",1,"1",81567397,NA,NA,215.81,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_9864",1,"1",81615881,NA,NA,215.82,3,3,0,1,1,1,0,1,1,1
     "solcap_snp_c1_3275",1,"1",81750527,NA,NA,217.23,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_3255",1,"1",81795335,NA,NA,217.88,1,1,1,0,0,0,1,0,0,0
     "solcap_snp_c1_3241",1,"1",81924813,NA,NA,219.27,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_3234",1,"1",81927346,NA,NA,219.38,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_47360",1,"1",82220028,NA,NA,221.34,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4896",1,"1",82628961,NA,NA,222.55,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c2_4799",1,"1",82927941,NA,NA,222.86,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_1638",1,"1",82935846,NA,NA,222.87,1,2,0,0,0,1,0,0,1,1
     "solcap_snp_c1_1653",1,"1",83012188,NA,NA,225.35,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c1_1683",1,"1",83059366,NA,NA,226.88,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4844",1,"1",83060466,NA,NA,227.75,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c2_4845",1,"1",83060720,NA,NA,229.69,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4860",1,"1",83130390,NA,NA,229.71,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_4864",1,"1",83138355,NA,NA,230.11,2,4,0,1,0,1,1,1,1,1
     "solcap_snp_c2_4875",1,"1",83177618,NA,NA,231.71,3,1,1,1,1,0,1,0,0,0
     "solcap_snp_c2_4884",1,"1",83186994,NA,NA,232.67,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_4885",1,"1",83187000,NA,NA,232.90,3,2,1,1,1,0,1,1,0,0
     "solcap_snp_c2_4898",1,"1",83283573,NA,NA,232.91,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4904",1,"1",83416355,NA,NA,234.34,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_4907",1,"1",83418574,NA,NA,236.34,3,4,1,1,1,0,1,1,1,1
     "solcap_snp_c2_4910",1,"1",83419340,NA,NA,237.80,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_1737",1,"1",83602469,NA,NA,238.45,2,3,0,1,0,1,1,0,1,1
     "solcap_snp_c1_1739",1,"1",83608625,NA,NA,240.68,3,4,1,1,0,1,1,1,1,1
     "solcap_snp_c2_4614",1,"1",83843457,NA,NA,240.69,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_4664",1,"1",84062694,NA,NA,242.21,1,3,0,0,0,1,0,1,1,1
     "solcap_snp_c2_4708",1,"1",84214693,NA,NA,244.20,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_4713",1,"1",84217673,NA,NA,244.21,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_36495",1,"1",84457206,NA,NA,244.46,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_34546",1,"1",84727952,NA,NA,246.10,1,3,0,0,0,1,0,1,1,1
     "solcap_snp_c1_10354",1,"1",84979069,NA,NA,251.03,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_22",1,"1",85243830,NA,NA,251.60,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_24",1,"1",85323495,NA,NA,255.50,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_13385",1,"1",85715515,NA,NA,256.96,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_46448",1,"1",85760106,NA,NA,256.97,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_53075",1,"1",85902499,NA,NA,257.70,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_42943",1,"1",85953353,NA,NA,258.40,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_49917",1,"1",86090288,NA,NA,258.41,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_49911",1,"1",86095463,NA,NA,258.42,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_49910",1,"1",86095890,NA,NA,258.43,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14839",1,"1",86328984,NA,NA,260.84,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14707",1,"1",86355213,NA,NA,260.85,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14708",1,"1",86356234,NA,NA,262.85,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14709",1,"1",86356378,NA,NA,262.86,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c1_4796",1,"1",86388041,NA,NA,263.11,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14730",1,"1",86441357,NA,NA,266.54,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_14733",1,"1",86527670,NA,NA,267.31,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_4799",1,"1",86663770,NA,NA,269.34,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14761",1,"1",86750111,NA,NA,270.26,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14762",1,"1",86750599,NA,NA,270.54,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14763",1,"1",86847560,NA,NA,270.82,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14764",1,"1",86847664,NA,NA,271.20,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14772",1,"1",86877778,NA,NA,271.58,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14779",1,"1",86887803,NA,NA,274.05,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_4803",1,"1",86942483,NA,NA,276.39,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c2_14827",1,"1",87096629,NA,NA,277.06,1,2,0,1,0,0,1,1,0,0
     "solcap_snp_c2_14840",1,"1",87161581,NA,NA,278.23,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_14841",1,"1",87161695,NA,NA,279.54,3,3,1,0,1,1,0,1,1,1
     "solcap_snp_c2_14848",1,"1",87196823,NA,NA,280.06,1,1,0,1,0,0,1,0,0,0
     "solcap_snp_c2_37836",1,"1",87392825,NA,NA,282.11,1,4,0,1,0,0,1,1,1,1
     "solcap_snp_c2_37820",1,"1",87463711,NA,NA,282.12,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_11288",1,"1",87558384,NA,NA,282.13,3,2,1,0,1,1,0,0,1,1
     "solcap_snp_c1_11308",1,"1",87663528,NA,NA,287.31,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_37850",1,"1",87731594,NA,NA,287.32,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_37816",1,"1",87746020,NA,NA,288.43,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c1_9428",1,"1",87944667,NA,NA,298.18,3,1,1,1,1,0,0,1,0,0
     "solcap_snp_c1_9430",1,"1",87965033,NA,NA,302.34,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_22105",1,"1",88057376,NA,NA,306.51,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_9413",1,"1",88294049,NA,NA,309.12,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_9406",1,"1",88347489,NA,NA,309.94,0,2,0,0,0,0,0,0,1,1
     "solcap_snp_c2_30963",1,"1",88362769,NA,NA,313.20,2,0,1,0,1,0,0,0,0,0
     "solcap_snp_c2_30961",1,"1",88389459,NA,NA,313.21,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_9397",1,"1",88409394,NA,NA,314.43,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c1_9392",1,"1",88434818,NA,NA,314.44,4,2,1,1,1,1,1,1,0,0
     "solcap_snp_c2_30958",1,"1",88451845,NA,NA,316.36,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_30956",1,"1",88452032,NA,NA,316.37,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_30955",1,"1",88452236,NA,NA,316.38,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_1504",2,"2", 4479289,NA,NA, 0.00,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_4344",2,"2", 4884993,NA,NA, 0.49,0,3,0,0,0,0,1,1,1,0
     "solcap_snp_c2_4354",2,"2", 5159401,NA,NA, 0.65,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_48725",2,"2", 5510874,NA,NA, 0.65,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_3750",2,"2", 6090174,NA,NA, 1.63,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c2_11591",2,"2", 6647886,NA,NA, 2.61,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c1_3747",2,"2", 7050814,NA,NA, 2.82,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_4515",2,"2", 8246308,NA,NA, 3.03,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_14690",2,"2", 8398966,NA,NA, 3.03,2,1,0,0,1,1,0,0,0,1
     "solcap_snp_c2_14648",2,"2", 8799627,NA,NA, 3.47,2,3,1,1,0,0,1,1,1,0
     "solcap_snp_c1_4792",2,"2", 8802985,NA,NA, 4.42,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_14645",2,"2", 9338437,NA,NA, 5.05,2,0,0,0,1,1,0,0,0,0
     "solcap_snp_c2_730",2,"2",12188889,NA,NA, 5.70,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_41887",2,"2",15292858,NA,NA, 6.44,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_47096",2,"2",16846846,NA,NA, 8.89,0,3,0,0,0,0,0,1,1,1
     "solcap_snp_c2_17387",2,"2",20193366,NA,NA, 9.64,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_17427",2,"2",20681191,NA,NA, 11.77,3,0,1,1,1,0,0,0,0,0
     "solcap_snp_c2_17428",2,"2",20681220,NA,NA, 12.45,1,3,0,0,0,1,1,1,0,1
     "solcap_snp_c1_5739",2,"2",20681710,NA,NA, 13.09,3,0,1,1,1,0,0,0,0,0
     "solcap_snp_c1_11344",2,"2",21725517,NA,NA, 18.09,0,2,0,0,0,0,1,0,1,0
     "solcap_snp_c2_38022",2,"2",22006999,NA,NA, 18.88,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_32421",2,"2",22621554,NA,NA, 21.89,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_9719",2,"2",22749359,NA,NA, 22.13,0,3,0,0,0,0,1,1,0,1
     "solcap_snp_c2_39705",2,"2",23426100,NA,NA, 25.47,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_39677",2,"2",23550342,NA,NA, 26.12,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_37256",2,"2",23737215,NA,NA, 27.42,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_11122",2,"2",23799802,NA,NA, 27.43,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_33996",2,"2",24149138,NA,NA, 30.38,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_53818",2,"2",24744880,NA,NA, 30.38,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c1_15402",2,"2",24899862,NA,NA, 31.49,4,1,1,1,1,1,0,0,1,0
     "solcap_snp_c2_52630",2,"2",24910552,NA,NA, 34.48,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_21752",2,"2",25050163,NA,NA, 36.52,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_6841",2,"2",25051854,NA,NA, 37.05,4,1,1,1,1,1,0,0,1,0
     "solcap_snp_c2_21746",2,"2",25072703,NA,NA, 37.40,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_21722",2,"2",25322160,NA,NA, 38.34,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_21717",2,"2",25423184,NA,NA, 40.23,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c1_9369",2,"2",26798985,NA,NA, 42.18,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_45392",2,"2",27065211,NA,NA, 42.79,0,2,0,0,0,0,1,1,0,0
     "solcap_snp_c2_45307",2,"2",27086772,NA,NA, 43.77,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c2_45310",2,"2",27088140,NA,NA, 43.93,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_45311",2,"2",27088340,NA,NA, 44.25,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_13459",2,"2",27143875,NA,NA, 45.22,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13465",2,"2",27190187,NA,NA, 45.92,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_12339",2,"2",27411139,NA,NA, 45.94,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_12345",2,"2",27412322,NA,NA, 46.50,0,1,0,0,0,0,0,0,1,0
     "solcap_snp_c1_12305",2,"2",27458950,NA,NA, 46.91,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_12310",2,"2",27553365,NA,NA, 47.61,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_41980",2,"2",27557427,NA,NA, 48.15,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_12330",2,"2",27618598,NA,NA, 48.15,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42059",2,"2",27676633,NA,NA, 48.15,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_38940",2,"2",27856761,NA,NA, 48.63,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_38938",2,"2",27860023,NA,NA, 49.54,3,0,1,0,1,1,0,0,0,0
     "solcap_snp_c2_38936",2,"2",27860101,NA,NA, 49.88,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_11556",2,"2",28039994,NA,NA, 50.06,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_38952",2,"2",28230312,NA,NA, 52.01,4,1,1,1,1,1,0,0,0,1
     "solcap_snp_c2_19692",2,"2",28745987,NA,NA, 54.82,4,2,1,1,1,1,0,1,0,1
     "solcap_snp_c1_5091",2,"2",28830938,NA,NA, 55.63,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_5088",2,"2",28832209,NA,NA, 55.63,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_15749",2,"2",28938673,NA,NA, 56.86,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_48238",2,"2",29093635,NA,NA, 56.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_48237",2,"2",29093750,NA,NA, 56.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_14280",2,"2",29136032,NA,NA, 56.86,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_48195",2,"2",29136966,NA,NA, 58.21,3,1,1,0,1,1,1,0,0,0
     "solcap_snp_c1_14293",2,"2",29163304,NA,NA, 59.03,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_39155",2,"2",29312895,NA,NA, 59.03,4,2,1,1,1,1,0,0,1,1
     "solcap_snp_c2_39135",2,"2",29416066,NA,NA, 61.45,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c2_51113",2,"2",29665174,NA,NA, 61.69,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13912",2,"2",29883519,NA,NA, 63.21,1,2,0,1,0,0,0,1,0,1
     "solcap_snp_c2_46903",2,"2",29922714,NA,NA, 63.51,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_46904",2,"2",29922763,NA,NA, 63.51,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c1_13929",2,"2",29928927,NA,NA, 63.80,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_46909",2,"2",29929969,NA,NA, 64.06,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_13910",2,"2",29990872,NA,NA, 64.32,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_13911",2,"2",30022458,NA,NA, 64.32,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_46885",2,"2",30044742,NA,NA, 64.33,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_46887",2,"2",30044882,NA,NA, 64.33,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_46898",2,"2",30147247,NA,NA, 64.62,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_7469",2,"2",30364207,NA,NA, 65.87,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_7412",2,"2",30401330,NA,NA, 66.50,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_7430",2,"2",30480570,NA,NA, 67.07,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_23170",2,"2",30785563,NA,NA, 68.54,1,3,0,1,0,0,1,0,1,1
     "solcap_snp_c2_23188",2,"2",31021446,NA,NA, 69.23,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_23192",2,"2",31060240,NA,NA, 70.07,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c2_54732",2,"2",31205330,NA,NA, 70.53,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_41534",2,"2",31571193,NA,NA, 71.69,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c1_13236",2,"2",31663185,NA,NA, 71.70,3,1,1,0,1,1,0,1,0,0
     "solcap_snp_c1_13233",2,"2",31714504,NA,NA, 71.70,1,2,0,1,0,0,0,0,1,1
     "solcap_snp_c2_39191",2,"2",32084708,NA,NA, 72.91,3,2,1,0,1,1,1,1,0,0
     "solcap_snp_c1_11581",2,"2",32220207,NA,NA, 74.63,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44771",2,"2",32647466,NA,NA, 75.14,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_44774",2,"2",32668501,NA,NA, 75.61,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44776",2,"2",32669850,NA,NA, 75.61,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44778",2,"2",32671297,NA,NA, 75.82,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_44768",2,"2",32806437,NA,NA, 76.46,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_44769",2,"2",32820718,NA,NA, 76.70,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_44770",2,"2",32822882,NA,NA, 76.70,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_13051",2,"2",33076397,NA,NA, 76.70,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c1_4192",2,"2",33204619,NA,NA, 78.22,2,1,0,0,1,1,0,1,0,0
     "solcap_snp_c2_51998",2,"2",33270668,NA,NA, 78.76,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_51985",2,"2",33352028,NA,NA, 80.22,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_51990",2,"2",33357450,NA,NA, 80.23,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c2_48784",2,"2",33668370,NA,NA, 82.72,3,3,1,1,1,0,0,1,1,1
     "solcap_snp_c2_47037",2,"2",33978883,NA,NA, 85.33,2,2,0,0,1,1,1,1,0,0
     "solcap_snp_c1_12264",2,"2",34171806,NA,NA, 86.01,2,2,1,1,0,0,0,0,1,1
     "solcap_snp_c2_33141",2,"2",34594739,NA,NA, 88.89,0,1,0,0,0,0,0,0,0,1
     "solcap_snp_c2_33108",2,"2",34739225,NA,NA, 88.90,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_40155",2,"2",35112346,NA,NA, 90.03,2,3,0,0,1,1,1,1,1,0
     "solcap_snp_c2_50570",2,"2",35399177,NA,NA, 91.75,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_50394",2,"2",35549597,NA,NA, 92.94,2,1,1,1,0,0,0,0,0,1
     "solcap_snp_c2_50391",2,"2",35579108,NA,NA, 93.63,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_50412",2,"2",35600542,NA,NA, 93.63,4,3,1,1,1,1,1,1,1,0
     "solcap_snp_c2_50405",2,"2",35657756,NA,NA, 94.17,1,3,0,0,1,0,1,1,1,0
     "solcap_snp_c2_27433",2,"2",35990927,NA,NA, 94.67,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_27437",2,"2",36019472,NA,NA, 94.67,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_17973",2,"2",36229730,NA,NA, 95.07,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c2_17954",2,"2",36329410,NA,NA, 96.17,2,2,1,0,0,1,1,0,1,0
     "solcap_snp_c2_17938",2,"2",36364347,NA,NA, 96.74,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17937",2,"2",36364435,NA,NA, 96.99,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17935",2,"2",36364609,NA,NA, 97.09,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17932",2,"2",36364767,NA,NA, 97.18,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17930",2,"2",36364901,NA,NA, 97.18,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17926",2,"2",36365501,NA,NA, 97.38,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17925",2,"2",36365552,NA,NA, 97.79,2,2,0,1,1,0,0,1,0,1
     "solcap_snp_c2_17922",2,"2",36374598,NA,NA, 98.62,1,2,1,0,0,0,1,0,1,0
     "solcap_snp_c2_17921",2,"2",36375406,NA,NA, 98.62,3,2,0,1,1,1,0,1,0,1
     "solcap_snp_c2_17914",2,"2",36422560,NA,NA,100.07,2,2,0,1,1,0,0,1,1,0
     "solcap_snp_c2_17901",2,"2",36454929,NA,NA,101.33,2,1,1,0,0,1,1,0,0,0
     "solcap_snp_c2_17900",2,"2",36455067,NA,NA,101.95,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17899",2,"2",36455154,NA,NA,101.96,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17897",2,"2",36455571,NA,NA,101.96,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_17896",2,"2",36455607,NA,NA,101.96,2,3,0,1,1,0,0,1,1,1
     "solcap_snp_c2_17895",2,"2",36455817,NA,NA,103.63,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_17816",2,"2",36728687,NA,NA,103.78,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_17809",2,"2",36799097,NA,NA,103.79,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_5846",2,"2",36959231,NA,NA,104.26,1,0,0,0,0,1,0,0,0,0
     "solcap_snp_c1_5845",2,"2",36959234,NA,NA,105.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_49495",2,"2",37017828,NA,NA,105.32,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c2_42169",2,"2",37438591,NA,NA,105.32,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_42172",2,"2",37439183,NA,NA,105.33,2,4,0,1,1,0,1,1,1,1
     "solcap_snp_c1_16170",2,"2",37474563,NA,NA,105.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_55632",2,"2",37474656,NA,NA,105.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_16171",2,"2",37475069,NA,NA,105.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_12373",2,"2",37530401,NA,NA,105.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_12382",2,"2",37654438,NA,NA,105.83,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_42241",2,"2",37676252,NA,NA,106.32,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35211",2,"2",37831945,NA,NA,106.33,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_10494",2,"2",37845965,NA,NA,106.33,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c1_10492",2,"2",37890758,NA,NA,106.83,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_10491",2,"2",37903554,NA,NA,107.24,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_35165",2,"2",37982943,NA,NA,108.38,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35139",2,"2",38046886,NA,NA,108.38,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_35113",2,"2",38121156,NA,NA,108.80,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_15466",2,"2",38386450,NA,NA,109.46,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53037",2,"2",38688112,NA,NA,109.46,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53036",2,"2",38688195,NA,NA,109.47,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53034",2,"2",38688354,NA,NA,109.47,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c2_53033",2,"2",38688468,NA,NA,109.88,2,1,1,0,0,1,0,1,0,0
     "solcap_snp_c1_11955",2,"2",38837510,NA,NA,112.32,2,1,1,1,0,0,0,1,0,0
     "solcap_snp_c2_40635",2,"2",39073404,NA,NA,113.50,2,2,0,0,1,1,0,0,1,1
     "solcap_snp_c2_40638",2,"2",39073700,NA,NA,115.75,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_42132",2,"2",39144989,NA,NA,115.75,1,3,0,0,1,0,1,0,1,1
     "solcap_snp_c2_42133",2,"2",39144999,NA,NA,115.75,1,3,0,0,1,0,1,0,1,1
     "solcap_snp_c2_42126",2,"2",39369111,NA,NA,115.80,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c2_42127",2,"2",39369213,NA,NA,115.80,2,0,1,1,0,0,0,0,0,0
     "solcap_snp_c1_8113",2,"2",39934151,NA,NA,120.10,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c1_8118",2,"2",39940655,NA,NA,120.12,2,3,0,0,1,1,1,0,1,1
     "solcap_snp_c1_8125",2,"2",39970010,NA,NA,120.19,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_25892",2,"2",40044441,NA,NA,122.61,4,3,1,1,1,1,0,1,1,1
     "solcap_snp_c2_25896",2,"2",40132579,NA,NA,122.66,3,3,1,0,1,1,1,0,1,1
     "solcap_snp_c2_25897",2,"2",40132705,NA,NA,122.66,0,1,0,0,0,0,1,0,0,0
     "solcap_snp_c2_25179",2,"2",40294633,NA,NA,123.40,2,2,0,1,1,0,1,1,0,0
     "solcap_snp_c1_7964",2,"2",40294982,NA,NA,126.16,3,3,1,1,1,0,1,1,0,1
     "solcap_snp_c2_7555",2,"2",41356969,NA,NA,128.16,0,2,0,0,0,0,0,1,1,0
     "solcap_snp_c2_7558",2,"2",41357718,NA,NA,128.59,0,2,0,0,0,0,0,1,1,0
     "solcap_snp_c2_7559",2,"2",41357748,NA,NA,128.59,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_7565",2,"2",41368149,NA,NA,129.00,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c1_2632",2,"2",41745246,NA,NA,130.15,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_2640",2,"2",41814961,NA,NA,130.65,2,3,0,0,1,1,1,1,1,0
     "solcap_snp_c1_2641",2,"2",41814973,NA,NA,131.72,2,1,0,0,1,1,1,0,0,0
     "solcap_snp_c1_2656",2,"2",41911152,NA,NA,133.37,4,3,1,1,1,1,1,1,0,1
     "solcap_snp_c1_2574",2,"2",42014614,NA,NA,133.68,2,3,1,1,0,0,0,1,1,1
     "solcap_snp_c2_7401",2,"2",42083055,NA,NA,136.14,3,3,0,1,1,1,1,0,1,1
     "solcap_snp_c2_7422",2,"2",42178610,NA,NA,137.92,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c1_2587",2,"2",42179852,NA,NA,138.59,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c2_7426",2,"2",42180225,NA,NA,139.86,3,3,1,0,1,1,1,1,1,0
     "solcap_snp_c2_57421",2,"2",42320846,NA,NA,141.09,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c1_16540",2,"2",42320852,NA,NA,141.19,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c1_15746",2,"2",42346419,NA,NA,142.45,4,2,1,1,1,1,1,0,0,1
     "solcap_snp_c2_22939",2,"2",42474531,NA,NA,144.58,2,1,1,1,0,0,0,0,0,1
     "solcap_snp_c1_7346",2,"2",42597250,NA,NA,146.12,2,2,1,1,0,0,1,0,0,1
     "solcap_snp_c2_22853",2,"2",42733575,NA,NA,146.95,3,2,0,1,1,1,0,1,1,0
     "solcap_snp_c1_7325",2,"2",42764357,NA,NA,147.64,1,1,1,0,0,0,0,0,0,1
     "solcap_snp_c2_27216",2,"2",43804789,NA,NA,152.13,1,1,0,1,0,0,0,0,0,1
     "solcap_snp_c2_27372",2,"2",44159308,NA,NA,155.23,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_27270",2,"2",44458161,NA,NA,155.71,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_27269",2,"2",44458317,NA,NA,155.71,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_27271",2,"2",44458644,NA,NA,158.41,2,3,0,0,1,1,1,1,0,1
     "solcap_snp_c1_8490",2,"2",44698531,NA,NA,160.85,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_43350",2,"2",44773146,NA,NA,162.25,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_43348",2,"2",44773305,NA,NA,163.47,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_12771",2,"2",44810386,NA,NA,164.70,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_43408",2,"2",44944594,NA,NA,164.70,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_12509",2,"2",45147157,NA,NA,165.43,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_42570",2,"2",45147640,NA,NA,165.43,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c2_14981",2,"2",45458650,NA,NA,168.41,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c1_4826",2,"2",45458875,NA,NA,168.42,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_4847",2,"2",45616677,NA,NA,168.43,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_15018",2,"2",45618297,NA,NA,170.53,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c1_4849",2,"2",45618958,NA,NA,170.88,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c2_15041",2,"2",45652545,NA,NA,172.61,2,3,0,0,1,1,1,1,0,1
     "solcap_snp_c2_15042",2,"2",45652553,NA,NA,175.68,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_15046",2,"2",45652811,NA,NA,175.68,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_15047",2,"2",45652877,NA,NA,176.03,1,1,0,1,0,0,0,1,0,0
     "solcap_snp_c2_15048",2,"2",45652958,NA,NA,176.28,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_15065",2,"2",45694316,NA,NA,176.45,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c1_4860",2,"2",45695631,NA,NA,176.60,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_15066",2,"2",45695637,NA,NA,176.76,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c1_4873",2,"2",45744372,NA,NA,176.88,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_4881",2,"2",45756458,NA,NA,176.88,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c1_7873",2,"2",46195290,NA,NA,177.44,4,3,1,1,1,1,1,0,1,1
     "solcap_snp_c1_7872",2,"2",46195303,NA,NA,178.19,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_7867",2,"2",46196437,NA,NA,179.89,3,2,0,1,1,1,1,0,0,1
     "solcap_snp_c1_7848",2,"2",46291502,NA,NA,179.89,1,2,1,0,0,0,0,1,1,0
     "solcap_snp_c1_7834",2,"2",46384191,NA,NA,181.66,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c2_24869",2,"2",46387342,NA,NA,182.20,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_47211",2,"2",46940997,NA,NA,182.20,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_47197",2,"2",47137310,NA,NA,184.36,3,3,0,1,1,1,1,1,0,1
     "solcap_snp_c2_47199",2,"2",47137738,NA,NA,184.36,3,3,1,0,1,1,1,0,1,1
     "solcap_snp_c2_47200",2,"2",47137863,NA,NA,187.30,2,0,0,0,1,1,0,0,0,0
     "solcap_snp_c2_47201",2,"2",47141179,NA,NA,188.15,1,1,1,0,0,0,0,1,0,0
     "solcap_snp_c1_10607",2,"2",47182635,NA,NA,189.23,1,1,1,0,0,0,0,0,1,0
     "solcap_snp_c1_10593",2,"2",47302272,NA,NA,193.87,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_35686",2,"2",47323948,NA,NA,193.87,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35687",2,"2",47324096,NA,NA,193.87,1,0,1,0,0,0,0,0,0,0
     "solcap_snp_c2_35690",2,"2",47324235,NA,NA,193.87,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_35691",2,"2",47324287,NA,NA,194.70,0,3,0,0,0,0,1,1,0,1
     "solcap_snp_c2_35692",2,"2",47325069,NA,NA,194.70,3,4,0,1,1,1,1,1,1,1
     "solcap_snp_c2_35697",2,"2",47325513,NA,NA,195.66,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_35700",2,"2",47326506,NA,NA,196.63,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_35701",2,"2",47327334,NA,NA,196.63,0,1,0,0,0,0,0,1,0,0
     "solcap_snp_c2_35702",2,"2",47327423,NA,NA,196.63,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_35706",2,"2",47327566,NA,NA,197.84,1,1,0,1,0,0,0,1,0,0
     "solcap_snp_c1_11458",2,"2",47625835,NA,NA,200.53,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c1_11459",2,"2",47625847,NA,NA,201.80,1,0,0,1,0,0,0,0,0,0
     "solcap_snp_c2_38551",2,"2",47627255,NA,NA,201.81,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_38552",2,"2",47627384,NA,NA,201.81,3,4,1,0,1,1,1,1,1,1
     "solcap_snp_c2_38553",2,"2",47627420,NA,NA,201.95,0,2,0,0,0,0,1,0,0,1
     "solcap_snp_c2_38555",2,"2",47627603,NA,NA,202.72,1,2,0,1,0,0,1,0,0,1
     "solcap_snp_c1_5931",2,"2",48498256,NA,NA,206.31,2,3,1,1,0,0,1,0,1,1
     "solcap_snp_c1_5895",2,"2",48565009,NA,NA,206.32,1,1,1,0,0,0,0,0,1,0
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.001 0.005
     Iter: 2 0.024 0.000 0.001 0.007
     Iter: 3 0.028 0.000 0.000 0.008
     Iter: 4 0.030 0.000 0.000 0.008
     Iter: 5 0.030 0.000 0.000 0.008
     Iter: 6 0.031 0.000 0.000 0.008
     Iter: 7 0.031 0.000 0.000 0.008
     Iter: 8 0.031 0.000 0.000 0.008
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
    
     Linkage group 1 ...
     INFO: Going singlemode. Using one CPU for calculation.
     Ploidy level: 4
     Number of markers: 20
     Number of individuals: 160
     ..................................................
     ..................................................
     ..................................................
     ..........
    
     Linkage group 1 ...
     trying URL 'https://github.com/mmollina/MAPpoly_vignettes/raw/master/data/sweet_sample_ch3.vcf.gz'
     Content type 'text/plain; charset=utf-8' length 1416917 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading data...
     Scanning file to determine attributes.
     File attributes:
     meta lines: 8
     header_line: 9
     variant count: 200
     column count: 326
    
     Meta line 8 read in.
     All meta lines processed.
     gt matrix initialized.
     Character matrix gt created.
     Character matrix gt rows: 200
     Character matrix gt cols: 326
     skip: 0
     nrows: 200
     row_num: 0
    
     Processed variant: 200
     All variants processed
     Processing genotypes...Done!
     Selected ploidy: 6
     Done!
     Read the following data:
     Ploidy level: 6
     No. individuals: 315
     No. markers: 167
     No. informative markers: 167 (100%)
     This dataset contains chromosome information.
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     This is an object of class 'mappoly.data'
     Ploidy level: 6
     No. individuals: 315
     No. markers: 164
     Missing data under prob. threshold: 6.01%
     Redundant markers: 1.8%
    
     No. markers per chromosome: not available
     ----------
     No. of markers per dosage combination in both parents:
     P1 P2 freq
     0 1 50
     0 2 8
     0 3 4
     0 4 1
     1 0 26
     1 1 12
     1 2 9
     1 3 4
     1 4 1
     2 0 3
     2 1 10
     2 2 7
     2 3 7
     2 4 4
     3 0 3
     3 1 3
     3 2 7
     3 3 1
     4 0 1
     4 1 2
     4 2 1
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/SolCAP_dosage'
     Content type 'text/plain; charset=utf-8' length 1445956 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 160
     No. markers: 4017
     No. informative markers: 4017 (100%)
     ...
    
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/hexa_sample'
     Content type 'text/plain; charset=utf-8' length 142904 bytes (139 KB)
     ==================================================
     downloaded 139 KB
    
     Reading the following data:
     Ploidy level: 6
     No. individuals: 50
     No. markers: 100
     No. informative markers: 71 (71%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/tetra_solcap.csv'
     Content type 'text/plain; charset=utf-8' length 1448564 bytes (1.4 MB)
     ==================================================
     downloaded 1.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 160
     No. markers: 4017
     No. informative markers: 4017 (100%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Done with filtering.
     trying URL 'https://raw.githubusercontent.com/mmollina/MAPpoly_vignettes/master/data/fitpoly.dat'
     Content type 'text/plain; charset=utf-8' length 3563386 bytes (3.4 MB)
     ==================================================
     downloaded 3.4 MB
    
     Reading the following data:
     Ploidy level: 4
     No. individuals: 150
     No. markers: 145
     No. informative markers: 138 (95.2%)
     ...
     Done with reading.
     Filtering non-conforming markers.
     ...
     Performing chi-square test.
     ...
     Done.
     This is an object of class 'mappoly.data'
     Ploidy level: 4
     No. individuals: 150
     No. markers: 138
     Missing data: 3.89%
    
     No. markers per chromosome: not available
     ----------
     No. of markers per dosage combination in both parents:
     P1 P2 freq
     0 1 18
     0 2 24
     1 0 18
     1 1 19
     1 2 10
     1 3 3
     2 0 13
     2 1 6
     2 2 15
     2 3 2
     3 1 1
     3 2 5
     3 3 2
     3 4 1
     4 2 1
     INFO: Going singlemode. Using one CPU for calculation.
     Also, number of markers is too small to perform parallel computation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 5
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007
     Iter: 1 0.031 0.000 0.000 0.008
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 20
     Number of individuals: 160
    
     Init. values: 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001
     Iter: 1 0.016 0.001 0.002 0.006 0.006 0.007 0.006 0.011 0.008 0.004 0.003 0.001 0.004 0.001 0.003 0.007 0.009 0.009 0.000
     Iter: 2 0.024 0.000 0.001 0.007 0.007 0.009 0.006 0.014 0.010 0.004 0.003 0.001 0.004 0.001 0.004 0.009 0.013 0.016 0.000
     Iter: 3 0.028 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.001 0.004 0.009 0.016 0.020 0.000
     Iter: 4 0.029 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.004 0.008 0.018 0.024 0.000
     Iter: 5 0.030 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.008 0.020 0.027 0.000
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.007 0.021 0.029 0.000
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.006 0.021 0.031 0.000
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.005 0.022 0.032 0.000
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.004 0.022 0.033 0.000
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.004 0.022 0.034 0.000
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.035 0.000
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.035 0.000
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.003 0.023 0.036 0.000
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.036 0.000
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.002 0.023 0.037 0.000
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.001 0.024 0.037 0.000
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.005 0.001 0.024 0.037 0.000
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.037 0.000
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.037 0.000
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.038 0.000
     Iter: 23 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010 0.004 0.003 0.000 0.005 0.000 0.006 0.001 0.024 0.038 0.000
     INFO: Going singlemode. Using one CPU for calculation.
     2 submaps found ...
     adding block 2 of 2
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
    
     M_1
     ----------------------------------
     dosage P1: 1
     dosage P2: 2
     ----
     dosage distribution
     0 1 2 3 mis
     23 120 126 31 0
     ----
     expected polysomic segregation
     0 1 2 3 4 5 6
     0.1 0.4 0.4 0.1 0.0 0.0 0.0
     ----------------------------------
     INFO: Going singlemode. Using one CPU for calculation.
     INFO: Going singlemode. Using one CPU.
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.006 0.017 0.010
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.029 0.000 0.000 0.007 0.007 0.009 0.006 0.015 0.010
     Iter: 1 0.030 0.000 0.000 0.007 0.007 0.009 0.006 0.017 0.010
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.009
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.006 0.006 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Ploidy level: 4
     Rec. Frac. Limit: 0.500
     Number of markers: 10
     Number of individuals: 160
    
     Init. values: 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.014
     Iter: 1 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.012
     Iter: 2 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.010
     Iter: 3 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.018 0.010
     Iter: 4 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.009
     Iter: 5 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.009
     Iter: 6 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 7 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 8 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 9 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 10 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 11 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 12 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.008
     Iter: 13 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 14 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 15 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 16 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 17 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 18 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 19 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 20 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 21 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 22 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 23 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Iter: 24 0.031 0.000 0.000 0.007 0.007 0.009 0.005 0.019 0.007
     Updating map 1
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 127 ]
    
     == Failed tests ================================================================
     -- Error (test-cahe_twopts.R:8:3): compute genotype counts correctly -----------
     Error in `get_cache_two_pts_from_web(ploidy = 4)`: Cache file not found. Try to use get.from.web = FALSE
     Backtrace:
     x
     1. \-mappoly::get_cache_two_pts_from_web(ploidy = 4) at test-cahe_twopts.R:8:2
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 127 ]
     Error: Test failures
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64