CRAN Package Check Results for Package joinet

Last updated on 2020-09-20 03:47:28 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.3 2.37 58.38 60.75 NOTE
r-devel-linux-x86_64-debian-gcc 0.0.3 1.87 44.05 45.92 NOTE
r-devel-linux-x86_64-fedora-clang 0.0.3 80.47 NOTE
r-devel-linux-x86_64-fedora-gcc 0.0.3 73.03 NOTE
r-devel-windows-ix86+x86_64 0.0.3 5.00 65.00 70.00 OK
r-patched-linux-x86_64 0.0.3 2.55 56.50 59.05 NOTE
r-patched-solaris-x86 0.0.3 69.10 ERROR
r-release-linux-x86_64 0.0.3 2.17 56.39 58.56 NOTE
r-release-macos-x86_64 0.0.3 OK
r-release-windows-ix86+x86_64 0.0.3 7.00 64.00 71.00 OK
r-oldrel-macos-x86_64 0.0.3 OK
r-oldrel-windows-ix86+x86_64 0.0.3 3.00 78.00 81.00 OK

Check Details

Version: 0.0.3
Check: package dependencies
Result: NOTE
    Package which this enhances but not available for checking: 'MRCE'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.0.3
Check: examples
Result: ERROR
    Running examples in ‘joinet-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: coef.joinet
    > ### Title: Extract Coefficients
    > ### Aliases: coef.joinet
    >
    > ### ** Examples
    >
    > n <- 50; p <- 100; q <- 3
    > X <- matrix(rnorm(n*p),nrow=n,ncol=p)
    > Y <- replicate(n=q,expr=rnorm(n=n,mean=rowSums(X[,1:5])))
    > object <- joinet(Y=Y,X=X)
    Error in approx(lambda, seq(lambda), sfrac) :
     need at least two non-NA values to interpolate
    Calls: joinet ... NextMethod -> predict.glmnet -> lambda.interp -> approx
    Execution halted
Flavor: r-patched-solaris-x86

Version: 0.0.3
Check: tests
Result: ERROR
     Running ‘testthat.R’
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(joinet)
     >
     > testthat::test_check(package="joinet",stop_on_warning=FALSE)
     ── 1. Error: (unknown) (@test.R#24) ───────────────────────────────────────────
     need at least two non-NA values to interpolate
     Backtrace:
     1. joinet::joinet(...)
     2. glmnet::cv.glmnet(...)
     3. glmnet:::cv.glmnet.raw(...)
     5. glmnet:::buildPredmat.default(...)
     9. glmnet::predict.glmnet(...)
     10. glmnet:::lambda.interp(lambda, s)
     11. stats::approx(lambda, seq(lambda), sfrac)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     [ OK: 3 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 1 ]
     1. Error: (unknown) (@test.R#24)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-patched-solaris-x86

Version: 0.0.3
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘article.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    --- finished re-building ‘article.Rmd’
    
    --- re-building ‘joinet.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it.
    Quitting from lines 105-106 (joinet.Rmd)
    Error: processing vignette 'joinet.Rmd' failed with diagnostics:
    need at least two non-NA values to interpolate
    --- failed re-building ‘joinet.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘joinet.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-patched-solaris-x86