CRAN Package Check Results for Package iteRates

Last updated on 2020-09-22 03:49:27 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.1 12.52 92.91 105.43 NOTE
r-devel-linux-x86_64-debian-gcc 3.1 0.29 2.03 2.32 ERROR
r-devel-linux-x86_64-fedora-clang 3.1 146.27 NOTE
r-devel-linux-x86_64-fedora-gcc 3.1 135.64 NOTE
r-devel-windows-ix86+x86_64 3.1 29.00 101.00 130.00 NOTE
r-patched-linux-x86_64 3.1 14.35 91.30 105.65 NOTE
r-patched-solaris-x86 3.1 205.50 NOTE
r-release-linux-x86_64 3.1 14.78 92.71 107.49 NOTE
r-release-macos-x86_64 3.1 NOTE
r-release-windows-ix86+x86_64 3.1 30.00 107.00 137.00 NOTE
r-oldrel-macos-x86_64 3.1 NOTE
r-oldrel-windows-ix86+x86_64 3.1 18.00 111.00 129.00 NOTE

Check Details

Version: 3.1
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     'partitions', 'VGAM', 'MASS', 'ape', 'apTreeshape', 'geiger',
     'gtools'
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'MASS' 'VGAM' 'apTreeshape' 'ape' 'geiger' 'gtools' 'partitions'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.1
Check: R code for possible problems
Result: NOTE
    BOTHlabels2: no visible global function definition for 'par'
    BOTHlabels2: no visible global function definition for 'strwidth'
    BOTHlabels2: no visible global function definition for 'strheight'
    BOTHlabels2: no visible global function definition for 'xinch'
    BOTHlabels2: no visible global function definition for 'yinch'
    BOTHlabels2: no visible global function definition for 'rect'
    BOTHlabels2: no visible global function definition for 'symbols'
    BOTHlabels2: no visible global function definition for 'rainbow'
    BOTHlabels2: no visible global function definition for 'segments'
    BOTHlabels2: no visible global function definition for
     'floating.pie.asp'
    BOTHlabels2: no visible global function definition for 'points'
    FP.comp.subs: no visible global function definition for 'na.omit'
    FP.comp.subs: no visible global function definition for 'quantile'
    PosGroups: no visible global function definition for 'combinations'
    Qcomp.subs: no visible global function definition for 'branching.times'
    Qcomp.subs: no visible global function definition for 'na.omit'
    Qcomp.subs: no visible global function definition for 'pchisq'
    RemRedun: no visible global function definition for 'na.exclude'
    birthdeath.tree.geiger1.3.1: no visible global function definition for
     'runif'
    birthdeath.tree.geiger1.3.1: no visible global function definition for
     'rexp'
    birthdeath.tree.geiger1.3.1: no visible global function definition for
     'old2new.phylo'
    birthdeath.tree.geiger1.3.1: no visible global function definition for
     'read.tree'
    birthdeath.tree.geiger1.3.1: no visible global function definition for
     'write.tree'
    censor.lnorm.x: no visible global function definition for 'optim'
    censor.vrat.x: no visible global function definition for 'optim'
    censor.weib.x: no visible global function definition for 'optim'
    color.tree.plot: no visible global function definition for 'rainbow'
    color.tree.plot: no visible global function definition for 'p.adjust'
    comBim: no visible global function definition for 'restrictedparts'
    comp.subs: no visible global function definition for 'branching.times'
    comp.subs: no visible global function definition for 'na.omit'
    comp.subs: no visible global function definition for 'pchisq'
    comp.subs.DF: no visible global function definition for
     'branching.times'
    comp.subs.DF: no visible global function definition for 'na.omit'
    comp.subs.DF: no visible global function definition for 'pchisq'
    compareSubTrees: no visible global function definition for
     'branching.times'
    drop.tip2.6: no visible global function definition for 'is.rooted'
    drop.tip2.6: no visible global function definition for 'locator'
    drop.tip2.6: no visible binding for global variable '.PlotPhyloEnv'
    drop.tip2.6: no visible global function definition for 'root'
    drop.tip2.6: no visible global function definition for 'reorder'
    drop.tip2.6: no visible global function definition for
     'collapse.singles'
    edgelabels2: no visible binding for global variable '.PlotPhyloEnv'
    internds: no visible global function definition for 'branching.times'
    min.lnorm: no visible global function definition for 'dlnorm'
    min.lnorm: no visible global function definition for 'plnorm'
    phylogram.plot2: no visible global function definition for 'segments'
    plot.phylo2: no visible global function definition for 'par'
    plot.phylo2: no visible global function definition for 'reorder'
    plot.phylo2: no visible global function definition for 'unrooted.xy'
    plot.phylo2: no visible global function definition for 'strwidth'
    plot.phylo2: no visible global function definition for 'uniroot'
    plot.phylo2: no visible global function definition for 'circular.plot'
    plot.phylo2: no visible global function definition for 'cladogram.plot'
    plot.phylo2: no visible global function definition for 'segments'
    plot.phylo2: no visible global function definition for 'text'
    plot.phylo2: no visible global function definition for 'strheight'
    plot.phylo2: no visible binding for global variable '.PlotPhyloEnv'
    subtrees2.6: no visible global function definition for 'Ntip'
    subtrees2.6: no visible global function definition for 'Nnode'
    subtrees2.6: no visible global function definition for 'drop.tip'
    subtreez: no visible global function definition for 'Ntip'
    subtreez: no visible global function definition for 'Nnode'
    tree.rand.test: no visible global function definition for
     'branching.times'
    treeSims: no visible global function definition for 'reorder'
    trimTree: no visible global function definition for 'is.ultrametric'
    trimTree: no visible global function definition for 'branching.times'
    trimTree: no visible global function definition for 'multi2di'
    trimTree: no visible global function definition for 'read.tree'
    trimTree: no visible global function definition for 'write.tree'
    trimTree: no visible global function definition for 'na.omit'
    Undefined global functions or variables:
     .PlotPhyloEnv Nnode Ntip branching.times circular.plot cladogram.plot
     collapse.singles combinations dlnorm drop.tip floating.pie.asp
     is.rooted is.ultrametric locator multi2di na.exclude na.omit
     old2new.phylo optim p.adjust par pchisq plnorm points quantile
     rainbow read.tree rect reorder restrictedparts rexp root runif
     segments strheight strwidth symbols text uniroot unrooted.xy
     write.tree xinch yinch
    Consider adding
     importFrom("grDevices", "rainbow")
     importFrom("graphics", "locator", "par", "points", "rect", "segments",
     "strheight", "strwidth", "symbols", "text", "xinch",
     "yinch")
     importFrom("stats", "dlnorm", "na.exclude", "na.omit", "optim",
     "p.adjust", "pchisq", "plnorm", "quantile", "reorder",
     "rexp", "runif", "uniroot")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.1
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-devel-linux-x86_64-debian-gcc