CRAN Package Check Results for Package bridgesampling

Last updated on 2020-09-30 15:47:53 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-0 10.43 245.40 255.83 OK
r-devel-linux-x86_64-debian-gcc 1.0-0 8.40 188.09 196.49 OK
r-devel-linux-x86_64-fedora-clang 1.0-0 304.23 OK
r-devel-linux-x86_64-fedora-gcc 1.0-0 309.00 OK
r-devel-windows-ix86+x86_64 1.0-0 22.00 277.00 299.00 ERROR
r-patched-linux-x86_64 1.0-0 10.39 243.09 253.48 OK
r-patched-solaris-x86 1.0-0 302.50 OK
r-release-linux-x86_64 1.0-0 10.35 245.78 256.13 OK
r-release-macos-x86_64 1.0-0 OK
r-release-windows-ix86+x86_64 1.0-0 22.00 291.00 313.00 ERROR
r-oldrel-macos-x86_64 1.0-0 OK
r-oldrel-windows-ix86+x86_64 1.0-0 20.00 269.00 289.00 ERROR

Check Details

Version: 1.0-0
Check: tests
Result: ERROR
     Running 'testthat.R' [147s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     >
     > test_check("bridgesampling")
     Loading required package: bridgesampling
     Median of 10 bridge sampling estimates
     of the log marginal likelihood: 4293.156
     Range of estimates: 4290.976 to 4294.028
     Interquartile range: 1.62594
     Method: normal
     make cmd is
     make -f "D:/RCompile/recent/R/etc/x64/Makeconf" -f "D:/RCompile/recent/R/etc/x64/Makevars.site" -f "D:/RCompile/recent/R/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="fileee089b11f95.dll" WIN=64 TCLBIN=64 OBJECTS="fileee089b11f95.o"
    
     make would use
     make[1]: Entering directory '/d/temp/Rtmp2t6QI6'
     if test "zfileee089b11f95.o" != "z"; then \
     if test -e "fileee089b11f95-win.def"; then \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o fileee089b11f95.dll fileee089b11f95-win.def fileee089b11f95.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o fileee089b11f95.dll fileee089b11f95-win.def fileee089b11f95.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/rtools40/mingw64/bin/nm fileee089b11f95.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o fileee089b11f95.dll tmp.def fileee089b11f95.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o fileee089b11f95.dll tmp.def fileee089b11f95.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory '/d/temp/Rtmp2t6QI6'
     -- 1. Error: stan_bridge_sampler (@test-stan_bridge_sampler_basic.R#56) -------
     D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: fileee089b11f95.o:fileee089b11f95.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: fileee089b11f95.o:fileee089b11f95.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: fileee089b11f95.o:fileee089b11f95.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: fileee089b11f95.o:fileee089b11f95.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x47): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: fileee089b11f95.o:fileee089b11f95.cpp:(.text$_ZN4stan4math16ad_tape_observerD0Ev[_ZN4stan4math16ad_tape_observerD0Ev]+0x15): more undefined references to `tbb::internal::task_scheduler_observer_v3::observe(bool)' followcollect2.exe: error: ld returned 1 exit status
     Backtrace:
     1. utils::capture.output(...)
     5. rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     6. rstan:::cxxfunctionplus(...)
     10. inline::cxxfunction(...)
     11. inline:::compileCode(f, code, language = language, verbose = verbose)
    
     -- 2. Error: stan_bridge_sampler (@test-stan_bridge_sampler_basic.R#56) -------
     invalid connection
     Backtrace:
     1. utils::capture.output(...)
     5. rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     6. rstan:::cxxfunctionplus(...)
     7. base::sink(type = "output")
    
     starting worker pid=202472 on localhost:11340 at 06:01:12.358
     starting worker pid=111660 on localhost:11340 at 06:01:12.723
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.412 seconds (Warm-up)
     Chain 1: 0.566 seconds (Sampling)
     Chain 1: 0.978 seconds (Total)
     Chain 1:
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.405 seconds (Warm-up)
     Chain 2: 0.536 seconds (Sampling)
     Chain 2: 0.941 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     Iteration: 5
     starting worker pid=119916 on localhost:11340 at 06:01:34.480
     starting worker pid=58100 on localhost:11340 at 06:01:34.864
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.678 seconds (Warm-up)
     Chain 1: 1.347 seconds (Sampling)
     Chain 1: 2.025 seconds (Total)
     Chain 1:
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.721 seconds (Warm-up)
     Chain 2: 0.867 seconds (Sampling)
     Chain 2: 1.588 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     == testthat results ===========================================================
     [ OK: 64 | SKIPPED: 13 | WARNINGS: 0 | FAILED: 2 ]
     1. Error: stan_bridge_sampler (@test-stan_bridge_sampler_basic.R#56)
     2. Error: stan_bridge_sampler (@test-stan_bridge_sampler_basic.R#56)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0-0
Check: tests
Result: ERROR
     Running 'testthat.R' [157s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     >
     > test_check("bridgesampling")
     Loading required package: bridgesampling
     Median of 10 bridge sampling estimates
     of the log marginal likelihood: 4293.156
     Range of estimates: 4290.976 to 4294.028
     Interquartile range: 1.62594
     Method: normal
     make cmd is
     make -f "D:/RCompile/recent/R-40~1.2/etc/x64/Makeconf" -f "D:/RCompile/recent/R-40~1.2/etc/x64/Makevars.site" -f "D:/RCompile/recent/R-40~1.2/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file2bd8429322ced.dll" WIN=64 TCLBIN=64 OBJECTS="file2bd8429322ced.o"
    
     make would use
     make[1]: Entering directory '/d/temp/RtmpoNfeFL'
     if test "zfile2bd8429322ced.o" != "z"; then \
     if test -e "file2bd8429322ced-win.def"; then \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file2bd8429322ced.dll file2bd8429322ced-win.def file2bd8429322ced.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.2/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file2bd8429322ced.dll file2bd8429322ced-win.def file2bd8429322ced.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.2/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/rtools40/mingw64/bin/nm file2bd8429322ced.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file2bd8429322ced.dll tmp.def file2bd8429322ced.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.2/bin/x64" -lR ; \
     d:/Compiler/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o file2bd8429322ced.dll tmp.def file2bd8429322ced.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-40~1.2/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory '/d/temp/RtmpoNfeFL'
     -- 1. Error: stan_bridge_sampler ----------------------------------------------
     D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file2bd8429322ced.o:file2bd8429322ced.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file2bd8429322ced.o:file2bd8429322ced.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file2bd8429322ced.o:file2bd8429322ced.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file2bd8429322ced.o:file2bd8429322ced.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x47): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'D:/Compiler/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: file2bd8429322ced.o:file2bd8429322ced.cpp:(.text$_ZN4stan4math16ad_tape_observerD0Ev[_ZN4stan4math16ad_tape_observerD0Ev]+0x15): more undefined references to `tbb::internal::task_scheduler_observer_v3::observe(bool)' followcollect2.exe: error: ld returned 1 exit status
     Backtrace:
     1. base::suppressMessages(...)
     3. rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     4. rstan:::cxxfunctionplus(...)
     8. inline::cxxfunction(...)
     9. inline:::compileCode(f, code, language = language, verbose = verbose)
    
     -- 2. Error: stan_bridge_sampler ----------------------------------------------
     invalid connection
     Backtrace:
     1. base::suppressMessages(...)
     3. rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     4. rstan:::cxxfunctionplus(...)
     5. base::sink(type = "output")
    
     starting worker pid=36592 on localhost:11298 at 18:46:47.745
     starting worker pid=53180 on localhost:11298 at 18:46:48.166
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0.016 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 160 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.42 seconds (Warm-up)
     Chain 1: 0.607 seconds (Sampling)
     Chain 1: 1.027 seconds (Total)
     Chain 1:
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.421 seconds (Warm-up)
     Chain 2: 0.638 seconds (Sampling)
     Chain 2: 1.059 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     Iteration: 5
     starting worker pid=27964 on localhost:11298 at 18:47:10.105
     starting worker pid=179124 on localhost:11298 at 18:47:10.479
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.701 seconds (Warm-up)
     Chain 1: 1.324 seconds (Sampling)
     Chain 1: 2.025 seconds (Total)
     Chain 1:
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.717 seconds (Warm-up)
     Chain 2: 0.825 seconds (Sampling)
     Chain 2: 1.542 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     == testthat results ===========================================================
     [ OK: 64 | SKIPPED: 13 | WARNINGS: 0 | FAILED: 2 ]
     1. Error: stan_bridge_sampler
     2. Error: stan_bridge_sampler
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.0-0
Check: tests
Result: ERROR
     Running 'testthat.R' [145s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > Sys.setenv("R_TESTS" = "")
     > library(testthat)
     >
     > test_check("bridgesampling")
     Loading required package: bridgesampling
     Median of 10 bridge sampling estimates
     of the log marginal likelihood: 4293.156
     Range of estimates: 4290.976 to 4294.028
     Interquartile range: 1.62594
     Method: normal
     make cmd is
     make -f "D:/RCompile/recent/R-36~1.3/etc/x64/Makeconf" -f "D:/RCompile/recent/R-36~1.3/etc/x64/Makevars.site" -f "D:/RCompile/recent/R-36~1.3/share/make/winshlib.mk" CXX='$(CXX11) $(CXX11STD)' CXXFLAGS='$(CXX11FLAGS)' CXXPICFLAGS='$(CXX11PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX11LDFLAGS)' SHLIB_LD='$(SHLIB_CXX11LD)' SHLIB="file301242a436372.dll" WIN=64 TCLBIN=64 OBJECTS="file301242a436372.o"
    
     make would use
     make[1]: Entering directory `/cygdrive/d/temp/Rtmp2hpY37'
     if test "zfile301242a436372.o" != "z"; then \
     if test -e "file301242a436372-win.def"; then \
     echo d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file301242a436372.dll file301242a436372-win.def file301242a436372.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file301242a436372.dll file301242a436372-win.def file301242a436372.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     else \
     echo EXPORTS > tmp.def; \
     d:/Compiler/gcc-4.9.3/mingw_64/bin/nm file301242a436372.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
     echo d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file301242a436372.dll tmp.def file301242a436372.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     d:/Compiler/gcc-4.9.3/mingw_64/bin/g++ -m64 -shared -s -static-libgcc -o file301242a436372.dll tmp.def file301242a436372.o -L"d:/Compiler/gcc-4.9.3/local330/lib/x64" -L"d:/Compiler/gcc-4.9.3/local330/lib" -L"D:/RCompile/recent/R-36~1.3/bin/x64" -lR ; \
     rm -f tmp.def; \
     fi \
     fi
     make[1]: Leaving directory `/cygdrive/d/temp/Rtmp2hpY37'
     -- 1. Error: stan_bridge_sampler ----------------------------------------------
     file301242a436372.o:file301242a436372.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D1Ev[_ZN3tbb8internal26task_scheduler_observer_v3D1Ev]+0x14): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file301242a436372.o:file301242a436372.cpp:(.text$_ZN3tbb8internal26task_scheduler_observer_v3D0Ev[_ZN3tbb8internal26task_scheduler_observer_v3D0Ev]+0x1c): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file301242a436372.o:file301242a436372.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x15): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file301242a436372.o:file301242a436372.cpp:(.text$_ZN4stan4math16ad_tape_observerD1Ev[_ZN4stan4math16ad_tape_observerD1Ev]+0x47): undefined reference to `tbb::internal::task_scheduler_observer_v3::observe(bool)'file301242a436372.o:file301242a436372.cpp:(.text$_ZN4stan4math16ad_tape_observerD0Ev[_ZN4stan4math16ad_tape_observerD0Ev]+0x15): more undefined references to `tbb::internal::task_scheduler_observer_v3::observe(bool)' followcollect2.exe: error: ld returned 1 exit status
     Backtrace:
     1. base::suppressMessages(...)
     3. rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     4. rstan:::cxxfunctionplus(...)
     8. inline::cxxfunction(...)
     9. inline:::compileCode(f, code, language = language, verbose = verbose)
    
     -- 2. Error: stan_bridge_sampler ----------------------------------------------
     invalid connection
     Backtrace:
     1. base::suppressMessages(...)
     3. rstan::stan_model(model_code = stancodeH0, model_name = "stanmodel")
     4. rstan:::cxxfunctionplus(...)
     5. base::sink(type = "output")
    
     starting worker pid=177924 on localhost:11687 at 23:02:24.409
     starting worker pid=175392 on localhost:11687 at 23:02:24.750
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.458 seconds (Warm-up)
     Chain 1: 1.512 seconds (Sampling)
     Chain 1: 1.97 seconds (Total)
     Chain 1:
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.425 seconds (Warm-up)
     Chain 2: 1.431 seconds (Sampling)
     Chain 2: 1.856 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     Iteration: 5
     starting worker pid=90296 on localhost:11687 at 23:02:43.999
     starting worker pid=36992 on localhost:11687 at 23:02:44.328
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 1).
     Chain 1:
     Chain 1: Gradient evaluation took 0 seconds
     Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 1: Adjust your expectations accordingly!
     Chain 1:
     Chain 1:
     Chain 1: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 1: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 1: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 1: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 1: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 1: Iteration: 2501 / 5000 [ 50%] (Sampling)
    
     SAMPLING FOR MODEL 'continuous' NOW (CHAIN 2).
     Chain 2:
     Chain 2: Gradient evaluation took 0 seconds
     Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0 seconds.
     Chain 2: Adjust your expectations accordingly!
     Chain 2:
     Chain 2:
     Chain 2: Iteration: 1 / 5000 [ 0%] (Warmup)
     Chain 2: Iteration: 500 / 5000 [ 10%] (Warmup)
     Chain 1: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 2: Iteration: 1000 / 5000 [ 20%] (Warmup)
     Chain 2: Iteration: 1500 / 5000 [ 30%] (Warmup)
     Chain 2: Iteration: 2000 / 5000 [ 40%] (Warmup)
     Chain 2: Iteration: 2500 / 5000 [ 50%] (Warmup)
     Chain 2: Iteration: 2501 / 5000 [ 50%] (Sampling)
     Chain 1: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 2: Iteration: 3000 / 5000 [ 60%] (Sampling)
     Chain 1: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 2: Iteration: 3500 / 5000 [ 70%] (Sampling)
     Chain 1: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 4000 / 5000 [ 80%] (Sampling)
     Chain 1: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 1:
     Chain 1: Elapsed Time: 0.745 seconds (Warm-up)
     Chain 1: 2.11 seconds (Sampling)
     Chain 1: 2.855 seconds (Total)
     Chain 1:
     Chain 2: Iteration: 4500 / 5000 [ 90%] (Sampling)
     Chain 2: Iteration: 5000 / 5000 [100%] (Sampling)
     Chain 2:
     Chain 2: Elapsed Time: 0.759 seconds (Warm-up)
     Chain 2: 1.811 seconds (Sampling)
     Chain 2: 2.57 seconds (Total)
     Chain 2:
     Iteration: 1
     Iteration: 2
     Iteration: 3
     Iteration: 4
     == testthat results ===========================================================
     [ OK: 64 | SKIPPED: 13 | WARNINGS: 0 | FAILED: 2 ]
     1. Error: stan_bridge_sampler
     2. Error: stan_bridge_sampler
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64