CRAN Package Check Results for Package Require

Last updated on 2020-11-24 15:52:18 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.0.8 6.86 182.02 188.88 OK
r-devel-linux-x86_64-debian-gcc 0.0.8 4.58 164.00 168.58 OK
r-devel-linux-x86_64-fedora-clang 0.0.8 227.27 ERROR
r-devel-linux-x86_64-fedora-gcc 0.0.8 239.56 ERROR
r-devel-windows-ix86+x86_64 0.0.8 11.00 172.00 183.00 OK
r-patched-linux-x86_64 0.0.8 6.46 213.00 219.46 OK
r-patched-solaris-x86 0.0.8 352.40 OK
r-release-linux-x86_64 0.0.8 6.51 212.54 219.05 OK
r-release-macos-x86_64 0.0.8 OK
r-release-windows-ix86+x86_64 0.0.8 7.00 90.00 97.00 OK
r-oldrel-macos-x86_64 0.0.8 OK
r-oldrel-windows-ix86+x86_64 0.0.8 7.00 120.00 127.00 OK

Check Details

Version: 0.0.8
Check: examples
Result: ERROR
    Running examples in ‘Require-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: pkgSnapshot
    > ### Title: Take a snapshot of all the packages and version numbers
    > ### Aliases: pkgSnapshot
    >
    > ### ** Examples
    >
    > pkgSnapFile <- tempfile()
    > pkgSnapshot(pkgSnapFile, .libPaths()[1])
    Error in get0(f, envir = .pkgEnv[["pkgDep"]][["DESCRIPTIONFile"]]) :
     first argument has length > 1
    Calls: pkgSnapshot ... FUN -> DESCRIPTIONFileVersionV -> lapply -> FUN -> get0
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.0.8
Check: tests
Result: ERROR
     Running ‘test-all.R’ [162s/212s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testit)
     > test_pkg('Require')
     Installing: TimeWarp (<= 2.3.1),
     -- Installing TimeWarp (<= 2.3.1) -- (1 of 1. Estimated time left: ...; est. finish: ...calculating)
     Installing package into '/tmp/RtmpAr7eAi/working_dir/RtmprKzRrU/Require/test1'
     (as 'lib' is unspecified)
     trying URL 'https://cloud.r-project.org/src/contrib/TimeWarp_1.0.15.tar.gz'
     Content type 'application/x-gzip' length 40987 bytes (40 KB)
     ==================================================
     downloaded 40 KB
    
     * installing *source* package ‘TimeWarp’ ...
     ** package ‘TimeWarp’ successfully unpacked and MD5 sums checked
     ** using staged installation
     ** R
     ** inst
     ** byte-compile and prepare package for lazy loading
     ** help
     *** installing help indices
     ** building package indices
     ** testing if installed package can be loaded from temporary location
     ** testing if installed package can be loaded from final location
     ** testing if installed package keeps a record of temporary installation path
     * DONE (TimeWarp)
    
     The downloaded source packages are in
     '/tmp/RtmpAr7eAi/working_dir/RtmprKzRrU/downloaded_packages'
     Loading required package: TimeWarp
     available.packages() doesn't have correct information on package dependencies for sdfd; downloading tar.gz
     sdfd dependencies not found on CRAN; perhaps incomplete description? On GitHub?
     available.packages() doesn't have correct information on package dependencies for data.tt; downloading tar.gz
     data.tt dependencies not found on CRAN; perhaps incomplete description? On GitHub?
     Installing: data.tt,
     -- Installing data.tt -- (1 of 1. Estimated time left: ...; est. finish: ...calculating)
     Installing package into '/tmp/RtmpAr7eAi/RLIBS_29ff6f7bcdd5e3'
     (as 'lib' is unspecified)
     deps is provided; useAllInSearch will be set to FALSE
     deps is provided; useAllInSearch will be set to FALSE
     Installing: data.table,
     -- Installing data.table -- (1 of 1. Estimated time left: ...; est. finish: ...calculating)
     Installing package into '/tmp/RtmpAr7eAi/working_dir/RtmprKzRrU/Require/RtmprKzRrU'
     (as 'lib' is unspecified)
     trying URL 'https://cloud.r-project.org/src/contrib/data.table_1.13.2.tar.gz'
     Content type 'application/x-gzip' length 5282452 bytes (5.0 MB)
     ==================================================
     downloaded 5.0 MB
    
     * installing *source* package ‘data.table’ ...
     ** package ‘data.table’ successfully unpacked and MD5 sums checked
     ** using staged installation
     zlib 1.2.11 is available ok
     OpenMP supported
     ** libs
     make[1]: Entering directory '/tmp/RtmpAr7eAi/working_dir/RtmpqOnpB7/R.INSTALL2a349573bf2d44/data.table/src'
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c assign.c -o assign.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c between.c -o between.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c bmerge.c -o bmerge.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c chmatch.c -o chmatch.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c cj.c -o cj.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c coalesce.c -o coalesce.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c dogroups.c -o dogroups.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fastmean.c -o fastmean.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fcast.c -o fcast.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fifelse.c -o fifelse.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fmelt.c -o fmelt.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c forder.c -o forder.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c frank.c -o frank.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fread.c -o fread.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c freadR.c -o freadR.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c froll.c -o froll.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c frollR.c -o frollR.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c frolladaptive.c -o frolladaptive.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fsort.c -o fsort.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fwrite.c -o fwrite.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fwriteR.c -o fwriteR.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c gsumm.c -o gsumm.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c ijoin.c -o ijoin.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c init.c -o init.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c inrange.c -o inrange.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c nafill.c -o nafill.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c nqrecreateindices.c -o nqrecreateindices.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c openmp-utils.c -o openmp-utils.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c quickselect.c -o quickselect.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c rbindlist.c -o rbindlist.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c reorder.c -o reorder.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c shift.c -o shift.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c snprintf.c -o snprintf.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c subset.c -o subset.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c transpose.c -o transpose.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c types.c -o types.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c uniqlist.c -o uniqlist.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c vecseq.c -o vecseq.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c wrappers.c -o wrappers.o
     clang -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o ijoin.o init.o inrange.o nafill.o nqrecreateindices.o openmp-utils.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -lz
     if [ "data.table.so" != "datatable.so" ]; then mv data.table.so datatable.so; fi
     if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id datatable.so datatable.so; fi
     make[1]: Leaving directory '/tmp/RtmpAr7eAi/working_dir/RtmpqOnpB7/R.INSTALL2a349573bf2d44/data.table/src'
     make[1]: Entering directory '/tmp/RtmpAr7eAi/working_dir/RtmpqOnpB7/R.INSTALL2a349573bf2d44/data.table/src'
     make[1]: Leaving directory '/tmp/RtmpAr7eAi/working_dir/RtmpqOnpB7/R.INSTALL2a349573bf2d44/data.table/src'
     installing to /tmp/RtmpAr7eAi/working_dir/RtmprKzRrU/Require/RtmprKzRrU/00LOCK-data.table/00new/data.table/libs
     ** R
     ** inst
     ** byte-compile and prepare package for lazy loading
     ** help
     *** installing help indices
     ** building package indices
     ** installing vignettes
     ** testing if installed package can be loaded from temporary location
     ** checking absolute paths in shared objects and dynamic libraries
     ** testing if installed package can be loaded from final location
     ** testing if installed package keeps a record of temporary installation path
     * DONE (data.table)
     WARNING: ignoring environment value of R_HOME
     trying URL 'https://cloud.r-project.org/src/contrib/Require_0.0.8.tar.gz'
     Content type 'application/x-gzip' length 72414 bytes (70 KB)
     ==================================================
     downloaded 70 KB
    
     * installing *source* package ‘Require’ ...
     ** package ‘Require’ successfully unpacked and MD5 sums checked
     ** using staged installation
     ** R
     ** inst
     ** byte-compile and prepare package for lazy loading
     ** help
     *** installing help indices
     ** building package indices
     ** testing if installed package can be loaded from temporary location
     ** testing if installed package can be loaded from final location
     ** testing if installed package keeps a record of temporary installation path
     * DONE (Require)
    
     The downloaded source packages are in
     ‘/tmp/RtmpAr7eAi/working_dir/RtmpjrXV6o/downloaded_packages’
     Installing: data.table (>= 1.10.4), remotes, Require,
     -- Installing data.table (>= 1.10.4) -- (1 of 3. Estimated time left: ...; est. finish: ...calculating)
     Using local cache of data.table_1.13.2.tar.gz
     * installing *source* package ‘data.table’ ...
     ** package ‘data.table’ successfully unpacked and MD5 sums checked
     ** using staged installation
     zlib 1.2.11 is available ok
     OpenMP supported
     ** libs
     make[1]: Entering directory '/tmp/RtmpAr7eAi/working_dir/RtmpXGvEZH/R.INSTALL2a60f038ec44d8/data.table/src'
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c assign.c -o assign.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c between.c -o between.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c bmerge.c -o bmerge.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c chmatch.c -o chmatch.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c cj.c -o cj.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c coalesce.c -o coalesce.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c dogroups.c -o dogroups.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fastmean.c -o fastmean.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fcast.c -o fcast.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fifelse.c -o fifelse.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fmelt.c -o fmelt.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c forder.c -o forder.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c frank.c -o frank.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fread.c -o fread.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c freadR.c -o freadR.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c froll.c -o froll.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c frollR.c -o frollR.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c frolladaptive.c -o frolladaptive.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fsort.c -o fsort.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fwrite.c -o fwrite.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c fwriteR.c -o fwriteR.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c gsumm.c -o gsumm.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c ijoin.c -o ijoin.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c init.c -o init.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c inrange.c -o inrange.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c nafill.c -o nafill.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c nqrecreateindices.c -o nqrecreateindices.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c openmp-utils.c -o openmp-utils.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c quickselect.c -o quickselect.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c rbindlist.c -o rbindlist.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c reorder.c -o reorder.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c shift.c -o shift.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c snprintf.c -o snprintf.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c subset.c -o subset.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c transpose.c -o transpose.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c types.c -o types.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c uniqlist.c -o uniqlist.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c vecseq.c -o vecseq.o
     clang -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -isystem /usr/local/clang/include -fopenmp -fpic -g -O3 -Wall -pedantic -c wrappers.c -o wrappers.o
     clang -shared -L/usr/local/clang/lib64 -L/usr/local/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o ijoin.o init.o inrange.o nafill.o nqrecreateindices.o openmp-utils.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -lz
     if [ "data.table.so" != "datatable.so" ]; then mv data.table.so datatable.so; fi
     if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id datatable.so datatable.so; fi
     make[1]: Leaving directory '/tmp/RtmpAr7eAi/working_dir/RtmpXGvEZH/R.INSTALL2a60f038ec44d8/data.table/src'
     make[1]: Entering directory '/tmp/RtmpAr7eAi/working_dir/RtmpXGvEZH/R.INSTALL2a60f038ec44d8/data.table/src'
     make[1]: Leaving directory '/tmp/RtmpAr7eAi/working_dir/RtmpXGvEZH/R.INSTALL2a60f038ec44d8/data.table/src'
     installing to /tmp/RtmpAr7eAi/working_dir/RtmprKzRrU/Require/RtmprKzRrU/00LOCK-data.table/00new/data.table/libs
     ** R
     ** inst
     ** byte-compile and prepare package for lazy loading
     ** help
     *** installing help indices
     ** building package indices
     ** installing vignettes
     ** testing if installed package can be loaded from temporary location
     ** checking absolute paths in shared objects and dynamic libraries
     ** testing if installed package can be loaded from final location
     ** testing if installed package keeps a record of temporary installation path
     * DONE (data.table)
     -- Installing remotes -- (2 of 3. Estimated time left: 70 secs; est. finish: 2020-11-23 21:27:37)
     Installing package into '/tmp/RtmpAr7eAi/working_dir/RtmprKzRrU/Require/RtmprKzRrU'
     (as 'lib' is unspecified)
     trying URL 'https://cloud.r-project.org/src/contrib/remotes_2.2.0.tar.gz'
     Content type 'application/x-gzip' length 145553 bytes (142 KB)
     ==================================================
     downloaded 142 KB
    
     * installing *source* package ‘remotes’ ...
     ** package ‘remotes’ successfully unpacked and MD5 sums checked
     ** using staged installation
     ** R
     ** inst
     ** byte-compile and prepare package for lazy loading
     ** help
     *** installing help indices
     ** building package indices
     ** installing vignettes
     ** testing if installed package can be loaded from temporary location
     ** testing if installed package can be loaded from final location
     ** testing if installed package keeps a record of temporary installation path
     * DONE (remotes)
     -- Installing Require -- (3 of 3. Estimated time left: 27 secs; est. finish: 2020-11-23 21:27:05)
     Installing package into '/tmp/RtmpAr7eAi/working_dir/RtmprKzRrU/Require/RtmprKzRrU'
     (as 'lib' is unspecified)
     trying URL 'https://cloud.r-project.org/src/contrib/Require_0.0.8.tar.gz'
     Content type 'application/x-gzip' length 72414 bytes (70 KB)
     ==================================================
     downloaded 70 KB
    
     * installing *source* package ‘Require’ ...
     ** package ‘Require’ successfully unpacked and MD5 sums checked
     ** using staged installation
     ** R
     ** inst
     ** byte-compile and prepare package for lazy loading
     ** help
     *** installing help indices
     ** building package indices
     ** testing if installed package can be loaded from temporary location
     ** testing if installed package can be loaded from final location
     ** testing if installed package keeps a record of temporary installation path
     * DONE (Require)
     Duplicate packages are Required; discarding older, or unavailable
     Package packageFullName keep installResult
     1: data.table data.table TRUE TRUE
     2: data.table data.table FALSE TRUE
     Duplicate packages are Required; discarding older, or unavailable
     Package packageFullName keep installResult
     1: data.table data.table TRUE TRUE
     2: data.table data.table FALSE TRUE
     .libPaths() is now: /tmp/RtmpAr7eAi/working_dir/RtmprKzRrU/Require/RtmprKzRrU, /data/gannet/ripley/R/R-clang/library
     Loading required package: data.table
     .libPaths() is now: /tmp/RtmpAr7eAi/RLIBS_29ff6f7bcdd5e3, /data/gannet/ripley/R/R-clang/library
     Error from lapply(file, function(f) { ...
     Error in get0(f, envir = .pkgEnv[["pkgDep"]][["DESCRIPTIONFile"]]) :
     first argument has length > 1
     Calls: test_pkg ... FUN -> DESCRIPTIONFileVersionV -> lapply -> FUN -> get0
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.0.8
Check: tests
Result: ERROR
     Running ‘test-all.R’ [183s/283s]
    Running the tests in ‘tests/test-all.R’ failed.
    Complete output:
     > library(testit)
     > test_pkg('Require')
     Installing: TimeWarp (<= 2.3.1),
     -- Installing TimeWarp (<= 2.3.1) -- (1 of 1. Estimated time left: ...; est. finish: ...calculating)
     Installing package into '/tmp/RtmpuV1WHc/working_dir/Rtmp6EK0jO/Require/test1'
     (as 'lib' is unspecified)
     trying URL 'https://cloud.r-project.org/src/contrib/TimeWarp_1.0.15.tar.gz'
     Content type 'application/x-gzip' length 40987 bytes (40 KB)
     ==================================================
     downloaded 40 KB
    
     * installing *source* package ‘TimeWarp’ ...
     ** package ‘TimeWarp’ successfully unpacked and MD5 sums checked
     ** using staged installation
     ** R
     ** inst
     ** byte-compile and prepare package for lazy loading
     ** help
     *** installing help indices
     ** building package indices
     ** testing if installed package can be loaded from temporary location
     ** testing if installed package can be loaded from final location
     ** testing if installed package keeps a record of temporary installation path
     * DONE (TimeWarp)
    
     The downloaded source packages are in
     '/tmp/RtmpuV1WHc/working_dir/Rtmp6EK0jO/downloaded_packages'
     Loading required package: TimeWarp
     available.packages() doesn't have correct information on package dependencies for sdfd; downloading tar.gz
     sdfd dependencies not found on CRAN; perhaps incomplete description? On GitHub?
     available.packages() doesn't have correct information on package dependencies for data.tt; downloading tar.gz
     data.tt dependencies not found on CRAN; perhaps incomplete description? On GitHub?
     Installing: data.tt,
     -- Installing data.tt -- (1 of 1. Estimated time left: ...; est. finish: ...calculating)
     Installing package into '/data/gannet/ripley/R/packages/tests-devel/Require.Rcheck'
     (as 'lib' is unspecified)
     deps is provided; useAllInSearch will be set to FALSE
     deps is provided; useAllInSearch will be set to FALSE
     Installing: data.table,
     -- Installing data.table -- (1 of 1. Estimated time left: ...; est. finish: ...calculating)
     Installing package into '/tmp/RtmpuV1WHc/working_dir/Rtmp6EK0jO/Require/Rtmp6EK0jO'
     (as 'lib' is unspecified)
     trying URL 'https://cloud.r-project.org/src/contrib/data.table_1.13.2.tar.gz'
     Content type 'application/x-gzip' length 5282452 bytes (5.0 MB)
     ==================================================
     downloaded 5.0 MB
    
     * installing *source* package ‘data.table’ ...
     ** package ‘data.table’ successfully unpacked and MD5 sums checked
     ** using staged installation
     gcc 10.2.1
     zlib 1.2.11 is available ok
     OpenMP supported
     ** libs
     make[1]: Entering directory '/tmp/RtmpuV1WHc/working_dir/RtmpNN7YnV/R.INSTALL292b181369b712/data.table/src'
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c assign.c -o assign.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c between.c -o between.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bmerge.c -o bmerge.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c chmatch.c -o chmatch.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cj.c -o cj.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c coalesce.c -o coalesce.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dogroups.c -o dogroups.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fastmean.c -o fastmean.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fcast.c -o fcast.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fifelse.c -o fifelse.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fmelt.c -o fmelt.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c forder.c -o forder.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c frank.c -o frank.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fread.c -o fread.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c freadR.c -o freadR.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c froll.c -o froll.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c frollR.c -o frollR.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c frolladaptive.c -o frolladaptive.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fsort.c -o fsort.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fwrite.c -o fwrite.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fwriteR.c -o fwriteR.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gsumm.c -o gsumm.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c ijoin.c -o ijoin.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c init.c -o init.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c inrange.c -o inrange.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c nafill.c -o nafill.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c nqrecreateindices.c -o nqrecreateindices.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c openmp-utils.c -o openmp-utils.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c quickselect.c -o quickselect.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rbindlist.c -o rbindlist.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c reorder.c -o reorder.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c shift.c -o shift.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c snprintf.c -o snprintf.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c subset.c -o subset.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c transpose.c -o transpose.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c types.c -o types.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c uniqlist.c -o uniqlist.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c utils.c -o utils.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c vecseq.c -o vecseq.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c wrappers.c -o wrappers.o
     gcc -shared -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -fpic -L/usr/local/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o ijoin.o init.o inrange.o nafill.o nqrecreateindices.o openmp-utils.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -lz
     if [ "data.table.so" != "datatable.so" ]; then mv data.table.so datatable.so; fi
     if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id datatable.so datatable.so; fi
     make[1]: Leaving directory '/tmp/RtmpuV1WHc/working_dir/RtmpNN7YnV/R.INSTALL292b181369b712/data.table/src'
     make[1]: Entering directory '/tmp/RtmpuV1WHc/working_dir/RtmpNN7YnV/R.INSTALL292b181369b712/data.table/src'
     make[1]: Leaving directory '/tmp/RtmpuV1WHc/working_dir/RtmpNN7YnV/R.INSTALL292b181369b712/data.table/src'
     installing to /tmp/RtmpuV1WHc/working_dir/Rtmp6EK0jO/Require/Rtmp6EK0jO/00LOCK-data.table/00new/data.table/libs
     ** R
     ** inst
     ** byte-compile and prepare package for lazy loading
     ** help
     *** installing help indices
     ** building package indices
     ** installing vignettes
     ** testing if installed package can be loaded from temporary location
     ** checking absolute paths in shared objects and dynamic libraries
     ** testing if installed package can be loaded from final location
     ** testing if installed package keeps a record of temporary installation path
     * DONE (data.table)
     WARNING: ignoring environment value of R_HOME
     trying URL 'https://cloud.r-project.org/src/contrib/Require_0.0.8.tar.gz'
     Content type 'application/x-gzip' length 72414 bytes (70 KB)
     ==================================================
     downloaded 70 KB
    
     * installing *source* package ‘Require’ ...
     ** package ‘Require’ successfully unpacked and MD5 sums checked
     ** using staged installation
     ** R
     ** inst
     ** byte-compile and prepare package for lazy loading
     ** help
     *** installing help indices
     ** building package indices
     ** testing if installed package can be loaded from temporary location
     ** testing if installed package can be loaded from final location
     ** testing if installed package keeps a record of temporary installation path
     * DONE (Require)
    
     The downloaded source packages are in
     ‘/tmp/RtmpuV1WHc/working_dir/Rtmp3VObI1/downloaded_packages’
     Installing: data.table (>= 1.10.4), remotes, Require,
     -- Installing data.table (>= 1.10.4) -- (1 of 3. Estimated time left: ...; est. finish: ...calculating)
     Using local cache of data.table_1.13.2.tar.gz
     * installing *source* package ‘data.table’ ...
     ** package ‘data.table’ successfully unpacked and MD5 sums checked
     ** using staged installation
     gcc 10.2.1
     zlib 1.2.11 is available ok
     OpenMP supported
     ** libs
     make[1]: Entering directory '/tmp/RtmpuV1WHc/working_dir/RtmpIB15JE/R.INSTALL29af895c4ac349/data.table/src'
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c assign.c -o assign.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c between.c -o between.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c bmerge.c -o bmerge.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c chmatch.c -o chmatch.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cj.c -o cj.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c coalesce.c -o coalesce.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dogroups.c -o dogroups.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fastmean.c -o fastmean.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fcast.c -o fcast.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fifelse.c -o fifelse.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fmelt.c -o fmelt.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c forder.c -o forder.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c frank.c -o frank.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fread.c -o fread.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c freadR.c -o freadR.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c froll.c -o froll.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c frollR.c -o frollR.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c frolladaptive.c -o frolladaptive.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fsort.c -o fsort.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fwrite.c -o fwrite.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c fwriteR.c -o fwriteR.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gsumm.c -o gsumm.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c ijoin.c -o ijoin.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c init.c -o init.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c inrange.c -o inrange.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c nafill.c -o nafill.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c nqrecreateindices.c -o nqrecreateindices.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c openmp-utils.c -o openmp-utils.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c quickselect.c -o quickselect.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rbindlist.c -o rbindlist.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c reorder.c -o reorder.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c shift.c -o shift.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c snprintf.c -o snprintf.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c subset.c -o subset.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c transpose.c -o transpose.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c types.c -o types.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c uniqlist.c -o uniqlist.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c utils.c -o utils.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c vecseq.c -o vecseq.o
     gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c wrappers.c -o wrappers.o
     gcc -shared -g -O2 -Wall -pedantic -mtune=native -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -fpic -L/usr/local/lib64 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o ijoin.o init.o inrange.o nafill.o nqrecreateindices.o openmp-utils.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -lz
     if [ "data.table.so" != "datatable.so" ]; then mv data.table.so datatable.so; fi
     if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id datatable.so datatable.so; fi
     make[1]: Leaving directory '/tmp/RtmpuV1WHc/working_dir/RtmpIB15JE/R.INSTALL29af895c4ac349/data.table/src'
     make[1]: Entering directory '/tmp/RtmpuV1WHc/working_dir/RtmpIB15JE/R.INSTALL29af895c4ac349/data.table/src'
     make[1]: Leaving directory '/tmp/RtmpuV1WHc/working_dir/RtmpIB15JE/R.INSTALL29af895c4ac349/data.table/src'
     installing to /tmp/RtmpuV1WHc/working_dir/Rtmp6EK0jO/Require/Rtmp6EK0jO/00LOCK-data.table/00new/data.table/libs
     ** R
     ** inst
     ** byte-compile and prepare package for lazy loading
     ** help
     *** installing help indices
     ** building package indices
     ** installing vignettes
     ** testing if installed package can be loaded from temporary location
     ** checking absolute paths in shared objects and dynamic libraries
     ** testing if installed package can be loaded from final location
     ** testing if installed package keeps a record of temporary installation path
     * DONE (data.table)
     -- Installing remotes -- (2 of 3. Estimated time left: 29 secs; est. finish: 2020-11-23 21:16:11)
     Installing package into '/tmp/RtmpuV1WHc/working_dir/Rtmp6EK0jO/Require/Rtmp6EK0jO'
     (as 'lib' is unspecified)
     trying URL 'https://cloud.r-project.org/src/contrib/remotes_2.2.0.tar.gz'
     Content type 'application/x-gzip' length 145553 bytes (142 KB)
     ==================================================
     downloaded 142 KB
    
     * installing *source* package ‘remotes’ ...
     ** package ‘remotes’ successfully unpacked and MD5 sums checked
     ** using staged installation
     ** R
     ** inst
     ** byte-compile and prepare package for lazy loading
     ** help
     *** installing help indices
     ** building package indices
     ** installing vignettes
     ** testing if installed package can be loaded from temporary location
     ** testing if installed package can be loaded from final location
     ** testing if installed package keeps a record of temporary installation path
     * DONE (remotes)
     -- Installing Require -- (3 of 3. Estimated time left: 13 secs; est. finish: 2020-11-23 21:16:06)
     Installing package into '/tmp/RtmpuV1WHc/working_dir/Rtmp6EK0jO/Require/Rtmp6EK0jO'
     (as 'lib' is unspecified)
     trying URL 'https://cloud.r-project.org/src/contrib/Require_0.0.8.tar.gz'
     Content type 'application/x-gzip' length 72414 bytes (70 KB)
     ==================================================
     downloaded 70 KB
    
     * installing *source* package ‘Require’ ...
     ** package ‘Require’ successfully unpacked and MD5 sums checked
     ** using staged installation
     ** R
     ** inst
     ** byte-compile and prepare package for lazy loading
     ** help
     *** installing help indices
     ** building package indices
     ** testing if installed package can be loaded from temporary location
     ** testing if installed package can be loaded from final location
     ** testing if installed package keeps a record of temporary installation path
     * DONE (Require)
     Duplicate packages are Required; discarding older, or unavailable
     Package packageFullName keep installResult
     1: data.table data.table TRUE TRUE
     2: data.table data.table FALSE TRUE
     Duplicate packages are Required; discarding older, or unavailable
     Package packageFullName keep installResult
     1: data.table data.table TRUE TRUE
     2: data.table data.table FALSE TRUE
     .libPaths() is now: /tmp/RtmpuV1WHc/working_dir/Rtmp6EK0jO/Require/Rtmp6EK0jO, /data/gannet/ripley/R/R-devel/library
     Loading required package: data.table
     .libPaths() is now: /data/gannet/ripley/R/packages/tests-devel/Require.Rcheck, /data/gannet/ripley/R/test-4.1, /data/gannet/ripley/R/R-devel/library
     Error from lapply(file, function(f) { ...
     Error in get0(f, envir = .pkgEnv[["pkgDep"]][["DESCRIPTIONFile"]]) :
     first argument has length > 1
     Calls: test_pkg ... FUN -> DESCRIPTIONFileVersionV -> lapply -> FUN -> get0
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc