Last updated on 2021-01-18 03:48:21 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.2.1 | 6.90 | 99.16 | 106.06 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.2.1 | 5.95 | 73.03 | 78.98 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.2.1 | 134.90 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.2.1 | 114.78 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.1.2.1 | 10.00 | 186.00 | 196.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1.2.1 | 6.54 | 92.05 | 98.59 | OK | |
| r-patched-solaris-x86 | 1.1.2.1 | 171.00 | WARN | |||
| r-release-linux-x86_64 | 1.1.2.1 | 6.29 | 91.27 | 97.56 | OK | |
| r-release-macos-x86_64 | 1.1.2.1 | WARN | ||||
| r-release-windows-ix86+x86_64 | 1.1.2.1 | 13.00 | 72.00 | 85.00 | WARN | |
| r-oldrel-macos-x86_64 | 1.1.2.1 | WARN | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1.2.1 | 12.00 | 86.00 | 98.00 | WARN |
Version: 1.1.2.1
Check: installed package size
Result: NOTE
installed size is 10.0Mb
sub-directories of 1Mb or more:
doc 4.7Mb
extdata 5.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "diagcode1"
# Missing values: 0 cases ( 0%)
# External causes codes: 0 cases ( 0%)
# V codes not mapped: 74330 cases ( 22.82%)
# Total ICD9-CM codes mapped: 146262 cases ( 44.9%)
# Unique ICD9-CM codes mapped: 3020
# Total PheWAS codes: 757
# ICD9 codes not mapped: 105180 cases ( 32.29%)
Warning in normalizePath(f2) :
path[1]="webshot16b11eb4ae5.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot16b11eb4ae5.png': No such file or directory
Quitting from lines 322-327 (EHRtemporalVariability.Rmd)
Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘EHRtemporalVariability.Rmd’
SUMMARY: processing the following file failed:
‘EHRtemporalVariability.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.1.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "diagcode1"
# Missing values: 0 cases ( 0%)
# External causes codes: 0 cases ( 0%)
# V codes not mapped: 74330 cases ( 22.82%)
# Total ICD9-CM codes mapped: 146262 cases ( 44.9%)
# Unique ICD9-CM codes mapped: 3020
# Total PheWAS codes: 757
# ICD9 codes not mapped: 105180 cases ( 32.29%)
Warning in normalizePath(f2) :
path[1]="webshot177e2e8cc083.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot177e2e8cc083.png': No such file or directory
Quitting from lines 322-327 (EHRtemporalVariability.Rmd)
Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘EHRtemporalVariability.Rmd’
SUMMARY: processing the following file failed:
‘EHRtemporalVariability.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'EHRtemporalVariability.Rmd' using rmarkdown
Quitting from lines 35-36 (EHRtemporalVariability.Rmd)
Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
argument is of length zero
--- failed re-building 'EHRtemporalVariability.Rmd'
SUMMARY: processing the following file failed:
'EHRtemporalVariability.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1.2.1
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘BiocStyle’
Flavor: r-oldrel-macos-x86_64
Version: 1.1.2.1
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘EHRtemporalVariability.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
Loading required package: dplyr
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining, by = "diagcode1"
# Missing values: 0 cases ( 0%)
# External causes codes: 0 cases ( 0%)
# V codes not mapped: 74330 cases ( 22.82%)
# Total ICD9-CM codes mapped: 146262 cases ( 44.9%)
# Unique ICD9-CM codes mapped: 3020
# Total PheWAS codes: 757
# ICD9 codes not mapped: 105180 cases ( 32.29%)
Warning in normalizePath(f2) :
path[1]="webshot28d93ef2aaa6.png": No such file or directory
Warning in file(con, "rb") :
cannot open file 'webshot28d93ef2aaa6.png': No such file or directory
Quitting from lines 322-327 (EHRtemporalVariability.Rmd)
Error: processing vignette 'EHRtemporalVariability.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘EHRtemporalVariability.Rmd’
SUMMARY: processing the following file failed:
‘EHRtemporalVariability.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64