CRAN Package Check Results for Package BootstrapQTL

Last updated on 2020-11-24 15:52:03 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.2 3.80 40.33 44.13 OK
r-devel-linux-x86_64-debian-gcc 1.0.2 2.92 30.31 33.23 OK
r-devel-linux-x86_64-fedora-clang 1.0.2 59.13 OK
r-devel-linux-x86_64-fedora-gcc 1.0.2 49.05 OK
r-devel-windows-ix86+x86_64 1.0.2 8.00 63.00 71.00 NOTE
r-patched-linux-x86_64 1.0.2 3.47 38.78 42.25 OK
r-patched-solaris-x86 1.0.2 72.80 OK
r-release-linux-x86_64 1.0.2 3.21 38.82 42.03 OK
r-release-macos-x86_64 1.0.2 OK
r-release-windows-ix86+x86_64 1.0.2 7.00 45.00 52.00 ERROR
r-oldrel-macos-x86_64 1.0.2 NOTE
r-oldrel-windows-ix86+x86_64 1.0.2 5.00 50.00 55.00 NOTE

Check Details

Version: 1.0.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'doMC'
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0.2
Check: tests
Result: ERROR
     Running 'testthat.R' [5s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(BootstrapQTL)
     Loading required package: MatrixEQTL
     >
     > test_check("BootstrapQTL")
     Registering 2 cores for bootstrap procedure.
     Mapping QTLs and obtaining nominal effect size estimates...
     Optimising data for bootstrap procedure...
     Running bootstrap procedure for 10 bootstraps on 2 cores.
     -- Warning (test.R:47:3): Run BootstrapQTL -------------------------------------
     already exporting variable(s): cvrt, snps_boot, gene_boot, snpspos, genepos, bootstrap_file_directory, sig_pairs, tests_per_gene, local_correction, eSNP_threshold, errorCovariance, cisDist, useModel
    
     -- Warning (test.R:47:3): Run BootstrapQTL -------------------------------------
     3/10 bootstraps failed with error 'The number of covariates exceeds the number of samples.
     Linear regression can not be fit.' in the bootstrap estimation group.
    
     Removing winner's curse...
     Restoring global environment...
     Done!
     -- Warning (test.R:53:3): Run BootstrapQTL -------------------------------------
     cannot open file 'D:\temp\RtmpeAcLCh\filee35063ff1d40': No such file or directory
    
     -- ERROR (test.R:53:3): Run BootstrapQTL ---------------------------------------
     Error: cannot open the connection
     Backtrace:
     x
     1. \-BootstrapQTL::BootstrapQTL(...) test.R:53:2
     2. \-BootstrapQTL:::setupParallel(n_cores, verbose = TRUE, reporterCore = FALSE)
     3. \-parallel::makeCluster(nCores, type = "PSOCK")
     4. \-parallel::makePSOCKcluster(names = spec, ...)
     5. \-base::system(cmd, wait = FALSE, input = "")
     6. \-base::writeLines(input, f)
     7. \-base::file(con, "w")
    
     Restoring global environment...
     == testthat results ===========================================================
     Warning (test.R:47:3): Run BootstrapQTL
     Warning (test.R:47:3): Run BootstrapQTL
     Warning (test.R:53:3): Run BootstrapQTL
     ERROR (test.R:53:3): Run BootstrapQTL
    
     [ FAIL 1 | WARN 3 | SKIP 0 | PASS 0 ]
     Error: Test failures
     Execution halted
Flavor: r-release-windows-ix86+x86_64

Version: 1.0.2
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘qvalue’
Flavor: r-oldrel-macos-x86_64

Version: 1.0.2
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘qvalue’
Flavor: r-oldrel-macos-x86_64