CRAN Package Check Results for Package AnnotationBustR

Last updated on 2020-09-27 03:46:26 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.0 2.71 30.00 32.71 OK
r-devel-linux-x86_64-debian-gcc 1.3.0 2.44 23.30 25.74 OK
r-devel-linux-x86_64-fedora-clang 1.3.0 49.63 OK
r-devel-linux-x86_64-fedora-gcc 1.3.0 40.58 OK
r-devel-windows-ix86+x86_64 1.3.0 36.00 51.00 87.00 OK
r-patched-linux-x86_64 1.3.0 3.45 28.98 32.43 OK
r-patched-solaris-x86 1.3.0 56.30 OK
r-release-linux-x86_64 1.3.0 3.20 28.73 31.93 OK
r-release-macos-x86_64 1.3.0 OK
r-release-windows-ix86+x86_64 1.3.0 7.00 38.00 45.00 OK
r-oldrel-macos-x86_64 1.3.0 OK
r-oldrel-windows-ix86+x86_64 1.2 6.00 55.00 61.00 ERROR

Check Details

Version: 1.2
Check: examples
Result: ERROR
    Running examples in 'AnnotationBustR-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: FindLongestSeq
    > ### Title: Find the longest sequence for each species from a list of
    > ### GenBank accession numbers.
    > ### Aliases: FindLongestSeq
    >
    > ### ** Examples
    >
    > #a vector of 4 genbank accessions, there are two for each species.
    > genbank.accessions<-c("KP978059.1","KP978060.1","JX516105.1","JX516111.1")
    > #returns the longest sequence respectively for the two species.
    > long.seq.result<-FindLongestSeq(genbank.accessions)
    Warning in file(file, "r") :
     InternetOpenUrl failed: 'Die Serververbindung konnte nicht hergestellt werden.'
    Error in file(file, "r") : cannot open the connection
    Calls: FindLongestSeq -> <Anonymous> -> scan -> file
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: tests
Result: ERROR
     Running 'testthat.R' [4s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > test_check("AnnotationBustR")
     Loading required package: AnnotationBustR
     -- 1. Error: More than max query works to find longest seq (@test_FindLongestSeq
     cannot open the connection
     Backtrace:
     1. ape::read.GenBank(as.vector(Achrist$V1))
     2. base::scan(file = URL, what = "", sep = "\n", quiet = TRUE)
     3. base::file(file, "r")
    
     == testthat results ===========================================================
     [ OK: 6 | SKIPPED: 1 | WARNINGS: 1 | FAILED: 1 ]
     1. Error: More than max query works to find longest seq (@test_FindLongestSeq.R#217)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64